Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Reverse (-)

53814584 .. 53817659

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATTCACGGCGACGTGAAGCCCAGCAATGTGTTACTGGAATCAGATTTCAATGCTAAGATTGGGGATTTTGGGCTTGCGAGATTGGAAACAGAGGGCGAGTTGGATCAGGGAGATCAAGTGGTGGTGGTGGAGGAAGAAGATGAGGGAGAGACAGAGAAAAAAAAGATTCTTGAAGTGTTTGTGGTCGTTGGGGATGATAATGTTTCGATCTTGGAAGAGGAGAGCATGAGTTTGAGTGTGGTGACTAGTGGATTGGAAGATGGCCGGACCCTGCAACACCACGTCACCGGTAGCCGACCCGAGCCACCTTCCCAAAGGCCACCATATCTACTTCTTTGTCTCCAATTTCGAATCTTTTGTGCAAACGCTCGAGGAGAAGGGAATCCAGTCTTTTCAGGTCATTTCCTAATGGCAAGGAGCATGTCTTTTTCTTTGATCAAGATAGCAATGGTTTGGAGGTTGCAAGTCAGTAAGCTCCATGGCAGCATAGAGGGTTGCTCGAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

170

Amino Acids

18.84

Weight (kDa)

4.85

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 34	1.2e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	265
AgeI	ACCGGT	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	52, 176
AhlI	ACTAGT	1 cut(s)	248
AjiI	CACGTC	2 cut(s)	16, 286
AluBI	AGCT	1 cut(s)	478
AluI	AGCT	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	146, 347
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	2 cut(s)	302, 372
AoxI	GGCC	2 cut(s)	265, 320
ApeKI	GCWGC	1 cut(s)	486
AsiGI	ACCGGT	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	256, 280
AsuII	TTCGAA	1 cut(s)	352
AvaI	CYCGRG	2 cut(s)	302, 372
AvaII	GGWCC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	146, 347
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
Bme18I	GGWCC	1 cut(s)	270
BmeT110I	CYCGRG	2 cut(s)	302, 372
BmgBI	CACGTC	2 cut(s)	16, 286
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	272
BplI	GAGNNNNNCTC	1 cut(s)	485
Bpu14I	TTCGAA	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	481
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	42, 389
Bse3DI	GCAATG	2 cut(s)	34, 456
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	34, 456
BseNI	ACTGG	2 cut(s)	42, 389
BseRI	GAGGAG	2 cut(s)	236, 390
BseXI	GCAGC	1 cut(s)	498
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	2 cut(s)	267, 322
BshTI	ACCGGT	1 cut(s)	290
BsiHKCI	CYCGRG	2 cut(s)	302, 372
BsiSI	CCGG	2 cut(s)	268, 291
BsmAI	GTCTC	2 cut(s)	146, 347
BsnI	GGCC	2 cut(s)	267, 322
BsoBI	CYCGRG	2 cut(s)	302, 372
Bsp119I	TTCGAA	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	106, 115, 210, 438
Bsp19I	CCATGG	1 cut(s)	481
BspANI	GGCC	2 cut(s)	267, 322
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	34, 456
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	42, 389
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	106, 115, 210, 438
BssT1I	CCWWGG	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	4 cut(s)	109, 118, 213, 441
BstMAI	GTCTC	2 cut(s)	146, 347
BstMBI	GATC	4 cut(s)	106, 115, 210, 438
BstNSI	RCATGY	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	267, 322
BtgI	CCRYGG	1 cut(s)	481
BtrI	CACGTC	2 cut(s)	16, 286
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	270
CspAI	ACCGGT	1 cut(s)	290
CviAII	CATG	3 cut(s)	229, 424, 482
CviJI	RGCY	7 cut(s)	22, 76, 267, 297, 307, 322, 478
CviKI_1	RGCY	7 cut(s)	22, 76, 267, 297, 307, 322, 478
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	4 cut(s)	108, 117, 212, 440
DpnII	GATC	4 cut(s)	106, 115, 210, 438
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	270
Eco88I	CYCGRG	2 cut(s)	302, 372
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	3 cut(s)	232, 427, 485
FaiI	YATR	5 cut(s)	230, 328, 425, 483, 491
FatI	CATG	3 cut(s)	228, 423, 481
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	487
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	487
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	267, 322
HapII	CCGG	2 cut(s)	268, 291
Hin1II	CATG	3 cut(s)	232, 427, 485
HinfI	GANTC	5 cut(s)	4, 41, 169, 354, 385
HpaII	CCGG	2 cut(s)	268, 291
HphI	GGTGA	2 cut(s)	256, 280
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	173, 442
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	321, 374
HpyCH4IV	ACGT	2 cut(s)	15, 285
HpyCH4V	TGCA	3 cut(s)	277, 365, 466
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	2 cut(s)	15, 285
Hsp92II	CATG	3 cut(s)	232, 427, 485
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	106, 115, 210, 438
LmnI	GCTCC	2 cut(s)	420, 483
LpnPI	CCDG	8 cut(s)	23, 37, 95, 281, 287, 304, 384, 402
Lsp1109I	GCAGC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	15, 285
MaeIII	GTNAC	3 cut(s)	33, 244, 286
MalI	GATC	4 cut(s)	108, 117, 212, 440
MboI	GATC	4 cut(s)	106, 115, 210, 438
MboII	GAAGA	4 cut(s)	149, 152, 230, 272
MluCI	AATT	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	7 cut(s)	88, 127, 139, 214, 368, 453, 487
MspI	CCGG	2 cut(s)	268, 291
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	106, 115, 210, 438
NlaIII	CATG	3 cut(s)	232, 427, 485
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	2 cut(s)	244, 286
NspI	RCATGY	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	372
PfeI	GAWTC	5 cut(s)	4, 41, 169, 354, 385
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	270
PspXI	VCTCGAGB	1 cut(s)	372
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	4 cut(s)	106, 115, 210, 438
Sau96I	GGNCC	1 cut(s)	270
SetI	ASST	6 cut(s)	18, 288, 313, 403, 464, 480
Sfr274I	CTCGAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	352
SinI	GGWCC	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	481
TaiI	ACGT	2 cut(s)	18, 288
TaqI	TCGA	4 cut(s)	209, 352, 373, 503
TasI	AATT	1 cut(s)	347
TfiI	GAWTC	5 cut(s)	4, 41, 169, 354, 385
TseFI	GTSAC	2 cut(s)	244, 286
TseI	GCWGC	1 cut(s)	486
Tsp45I	GTSAC	2 cut(s)	244, 286
VpaK11BI	GGWCC	1 cut(s)	270
XceI	RCATGY	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.