Rh5CG565900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016804
Physical Location & Seq
Reverse (-)
80077191 .. 80083852
6662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG565900.1

Sequence Viewer

Length: 267 bp
ATGAGCGAGGATCCAAATAGAGATCTAGAATTGTCAGTGGGGCCTAGGTTTCATGGTGGCGATGACGATTGGGAAGACGAAGCTGCACTCTGGCTGGCTCAGCGCCACGGACAGGGATGTCATGTGTGTGGTGTGTGTGGTGGTTTTGGGCATTATGTGGGAAAACTGGAAGATTTTCCAATGGGAGGACCAACTGGAAGATTTTCCAATGGGAAAACTGTTGTTGATGCTGTTGGTGAGAGGCTTGGTTCCTTCATTTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.48

Weight (kDa)

4.78

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 117
AclWI GGATC 2 cut(s) 5, 18
AfiI CCNNNNNNNGG 2 cut(s) 112, 185
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwI GGATC 2 cut(s) 5, 18
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 83
Asp700I GAANNNNTTC 2 cut(s) 174, 202
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 41, 188
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 188
AvrII CCTAGG 1 cut(s) 44
BamHI GGATCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 70
BfaI CTAG 2 cut(s) 26, 45
BfoI RGCGCY 1 cut(s) 106
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 84
BlnI CCTAGG 1 cut(s) 44
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 41, 188
BmiI GGNNCC 3 cut(s) 12, 42, 250
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 44, 106
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 185
Bse1I ACTGG 2 cut(s) 171, 199
BseDI CCNNGG 2 cut(s) 44, 106
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 112, 185
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 171, 199
BseXI GCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 112, 185
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 10, 22
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 12, 42, 250
BspPI GGATC 2 cut(s) 5, 18
BsrI ACTGG 2 cut(s) 171, 199
BssECI CCNNGG 2 cut(s) 44, 106
BssMI GATC 2 cut(s) 10, 22
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 13, 25
BstMBI GATC 2 cut(s) 10, 22
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 10, 22
BstYI RGATCY 2 cut(s) 10, 22
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 106
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 41, 188
CviAII CATG 2 cut(s) 53, 122
CviJI RGCY 5 cut(s) 43, 83, 94, 98, 244
CviKI_1 RGCY 5 cut(s) 43, 83, 94, 98, 244
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 12, 24
DpnII GATC 2 cut(s) 10, 22
DrdI GACNNNNNNGTC 1 cut(s) 117
DseDI GACNNNNNNGTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 56, 125
FaiI YATR 3 cut(s) 54, 123, 156
FatI CATG 2 cut(s) 52, 121
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 2 cut(s) 26, 45
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 1 cut(s) 43
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 56, 125
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HphI GGTGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 2 cut(s) 56, 125
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 10, 22
LpnPI CCDG 5 cut(s) 76, 80, 98, 152, 180
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 26, 45
MalI GATC 2 cut(s) 12, 24
MboI GATC 2 cut(s) 10, 22
MboII GAAGA 3 cut(s) 86, 182, 210
MflI RGATCY 2 cut(s) 10, 22
MluCI AATT 1 cut(s) 29
MnlI CCTC 2 cut(s) 179, 234
MroXI GAANNNNTTC 2 cut(s) 174, 202
MslI CAYNNNNRTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 2 cut(s) 10, 22
NlaIII CATG 2 cut(s) 56, 125
NlaIV GGNNCC 3 cut(s) 12, 42, 250
PdmI GAANNNNTTC 2 cut(s) 174, 202
PkrI GCNGC 1 cut(s) 85
PspN4I GGNNCC 3 cut(s) 12, 42, 250
PspPI GGNCC 2 cut(s) 41, 188
PsuI RGATCY 2 cut(s) 10, 22
RseI CAYNNNNRTG 1 cut(s) 126
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 10, 22
Sau96I GGNCC 2 cut(s) 41, 188
SetI ASST 2 cut(s) 50, 85
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 1 cut(s) 29
SspMI CTAG 2 cut(s) 26, 45
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 220
TasI AATT 1 cut(s) 29
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 41, 244
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 25
XmaJI CCTAGG 1 cut(s) 44
XmnI GAANNNNTTC 2 cut(s) 174, 202
XspI CTAG 2 cut(s) 26, 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.