Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Reverse (-)

2915105 .. 2920412

Gene Structure 5308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAATTGTCGGTGGTGCCTAGGTTTCTTGGTGGCGACGGTGATCGGGAAGACGAAGCTGCACTCTGGCTGGCTTGGCGCCCTGGACAGGGATGTCACCGTCACCGGACACAATTAATTGGAGCAAAGCCATCTATAGTGGGAGATGCCATTGATTACATACAGGAGCTCAAGAGGACTGTGAGTGAGCTGAAACTGCGGACGGAGAAAAAAAGATGTATGAAGGTCTTTTTGTATGCAAGTGCCATTGCCAACAAGCTCATTGAGACTCTGGATAGACAATATGCAGCAGTTCAACATACTGCTTTGTTTTTTGTTTTACACTTCTTGGGATTGTTGCTCAATTCCTTTCGATTGCATCAAGAGCAACCTCGTTGGCTCTCACCTAGTCGAATCTGCTCACTAATCGACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

138

Amino Acids

15.86

Weight (kDa)

8.88

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	93
AccB1I	GGYRCC	2 cut(s)	16, 78
AciI	CCGC	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	88, 89
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	59, 169, 190, 259
AluI	AGCT	4 cut(s)	59, 169, 190, 259
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	59, 287
AseI	ATTAAT	1 cut(s)	116
AspA2I	CCTAGG	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	81
AsuHPI	GGTGA	4 cut(s)	53, 89, 95, 375
AvrII	CCTAGG	1 cut(s)	20
BanI	GGYRCC	2 cut(s)	16, 78
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	46, 299
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	21, 387
BfmI	CTRYAG	1 cut(s)	135
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	2 cut(s)	60, 288
BlnI	CCTAGG	1 cut(s)	20
BlsI	GCNGC	2 cut(s)	61, 289
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	18, 80
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	136, 367
BpiI	GAAGAC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	20, 82
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 89
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	20, 82
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	88, 89
BseMI	GCAATG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	46, 299
BsgI	GTGCAG	1 cut(s)	45
BshNI	GGYRCC	2 cut(s)	16, 78
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	88, 89
BsmAI	GTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	18, 80
BspT107I	GGYRCC	2 cut(s)	16, 78
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	20, 82
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	41, 101, 181
BstACI	GRCGYC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 196, 364
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	46, 299
BstV2I	GAAGAC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	81
CviJI	RGCY	8 cut(s)	59, 70, 74, 130, 169, 190, 259, 379
CviKI_1	RGCY	8 cut(s)	59, 70, 74, 130, 169, 190, 259, 379
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	93
DseDI	GACNNNNNNGTC	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	20
FaiI	YATR	6 cut(s)	137, 161, 221, 237, 285, 300
Fnu4HI	GCNGC	2 cut(s)	60, 288
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	60, 288
FspBI	CTAG	2 cut(s)	21, 387
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	60, 288
HaeII	RGCGCY	1 cut(s)	82
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	268, 393
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	4 cut(s)	53, 89, 95, 375
Hpy188III	TCNNGA	4 cut(s)	47, 172, 272, 362
Hpy99I	CGWCG	2 cut(s)	41, 413
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	3 cut(s)	41, 101, 181
HpyCH4V	TGCA	4 cut(s)	62, 239, 287, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 196, 364
Hsp92I	GRCGYC	1 cut(s)	79
HspAI	GCGC	1 cut(s)	79
KasI	GGCGCC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	122, 166
LpnPI	CCDG	8 cut(s)	52, 56, 69, 74, 96, 119, 149, 257
Lsp1109I	GCAGC	2 cut(s)	46, 299
LweI	GCATC	2 cut(s)	136, 367
MaeI	CTAG	2 cut(s)	21, 387
MaeIII	GTNAC	2 cut(s)	95, 101
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	4 cut(s)	5, 113, 117, 343
Mly113I	GGCGCC	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	2 cut(s)	168, 381
MseI	TTAA	1 cut(s)	116
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	76, 196, 364
NarI	GGCGCC	1 cut(s)	79
NdeII	GATC	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	18, 80
NmuCI	GTSAC	2 cut(s)	95, 101
PfeI	GAWTC	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	61, 289
PleI	GAGTC	1 cut(s)	262
PluTI	GGCGCC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	18, 80
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	60, 288
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	8 cut(s)	26, 61, 171, 192, 228, 261, 373, 388
SfaNI	GCATC	2 cut(s)	136, 367
SfcI	CTRYAG	1 cut(s)	135
SfoI	GGCGCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	5, 113, 117, 343
SsiI	CCGC	1 cut(s)	199
SspDI	GGCGCC	1 cut(s)	78
SspMI	CTAG	2 cut(s)	21, 387
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	41, 101, 181
TaqI	TCGA	3 cut(s)	352, 391, 408
TasI	AATT	4 cut(s)	5, 113, 117, 343
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseFI	GTSAC	2 cut(s)	95, 101
TseI	GCWGC	2 cut(s)	59, 287
Tsp45I	GTSAC	2 cut(s)	95, 101
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	116
XmaJI	CCTAGG	1 cut(s)	20
XspI	CTAG	2 cut(s)	21, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.