Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005339.1

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Forward (+)

4172 .. 4447

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005339.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgattcacggcaacgtgaagcccagcaatgtgctactggactcagatttcaatgccatgattggggatttcgggcctgcgaggttggaaacaaagggcaagttggatcagggagatcaagtgatggtggtggaggaagaagatgagggagagactgacaggacccgcccccaatttcactctgaaatccgaggtggccctgcggggcccaccttagtgataactctaccgagaactggtcgagtcacccctaaagtggactacccaaaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

91

Amino Acids

10.0

Weight (kDa)

5.04

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	166, 203
AclWI	GGATC	1 cut(s)	114
AfiI	CCNNNNNNNGG	3 cut(s)	63, 236, 256
AgsI	TTSAA	1 cut(s)	52
AleI	CACNNNNGTG	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	3 cut(s)	74, 196, 206
ApaI	GGGCCC	1 cut(s)	210
AspS9I	GGNCC	5 cut(s)	74, 162, 197, 206, 207
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	210
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	5 cut(s)	74, 162, 197, 206, 207
BmiI	GGNNCC	3 cut(s)	164, 207, 208
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 236, 256
Bse1I	ACTGG	2 cut(s)	42, 241
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	3 cut(s)	63, 236, 256
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	42, 241
BseSI	GKGCMC	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	3 cut(s)	76, 198, 208
BslI	CCNNNNNNNGG	3 cut(s)	63, 236, 256
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	76, 198, 208
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	106, 115
BspACI	CCGC	2 cut(s)	166, 203
BspANI	GGCC	3 cut(s)	76, 198, 208
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	3 cut(s)	164, 207, 208
BspPI	GGATC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	42, 241
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	106, 115
Bst4CI	ACNGT	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	43, 214
BstKTI	GATC	2 cut(s)	109, 118
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	106, 115
BstSLI	GKGCMC	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	76, 198, 208
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	5 cut(s)	74, 162, 197, 206, 207
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	4 cut(s)	22, 76, 198, 208
CviKI_1	RGCY	4 cut(s)	22, 76, 198, 208
DdeI	CTNAG	2 cut(s)	43, 214
DpnI	GATC	2 cut(s)	108, 117
DpnII	GATC	2 cut(s)	106, 115
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	162
EcoO109I	RGGNCCY	2 cut(s)	162, 206
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	61
FaiI	YATR	1 cut(s)	59
FatI	CATG	1 cut(s)	57
FauI	CCCGC	2 cut(s)	173, 196
FriOI	GRGCYC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	76, 198, 208
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	3 cut(s)	4, 41, 243
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	46, 184, 191
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	1 cut(s)	15
HpyF3I	CTNAG	2 cut(s)	43, 214
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	106, 115
LpnPI	CCDG	7 cut(s)	23, 37, 90, 95, 145, 213, 222
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	108, 117
MboI	GATC	2 cut(s)	106, 115
MboII	GAAGA	2 cut(s)	149, 152
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	35, 252
MmeI	TCCRAC	2 cut(s)	66, 84
MnlI	CCTC	4 cut(s)	75, 127, 139, 185
MslI	CAYNNNNRTG	1 cut(s)	215
NdeII	GATC	2 cut(s)	106, 115
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	164, 207, 208
NmuCI	GTSAC	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	2 cut(s)	35, 251
PpsI	GAGTC	2 cut(s)	35, 251
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	23
PspN4I	GGNNCC	3 cut(s)	164, 207, 208
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	5 cut(s)	74, 162, 197, 206, 207
PspPPI	RGGWCCY	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	106, 115
Sau96I	GGNCC	5 cut(s)	74, 162, 197, 206, 207
SchI	GAGTC	2 cut(s)	35, 252
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	18, 86, 196, 215
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	2 cut(s)	166, 203
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	241
TasI	AATT	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	4
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.