Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001148.1

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Forward (+)

35107 .. 35922

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001148.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggcaaatggcccatctttgtcccaatatggcctcttcttctgccttcgcctcatctctgagcctctctcactcttcataactgagcactctcaattttcacattttccgattatgagcgaggatccaaatagagatctagaattgtcggtggggcctaggtttcatggtggcgatgacgattgggaagacgaagctgcactctggctggctcagcgccacggacaggagcctccaggaggctttgctggaccagtgattcacggcgacgtgaagcccaacaaggtgctgctagactcagatttcaatgctaagattggggatttcgggcctgcgaggttggaaacagggggcaagttggatcagggcgatcaagtggtggtggaggtggaggaaaaagatgagggaaagctaagaaaaaagagattgagaagggttttcggcgtggtctccgatatagaggagaagaagaaggaggggggagagagagaaaaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

166

Amino Acids

18.54

Weight (kDa)

5.18

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	119, 132, 369
AfiI	CCNNNNNNNGG	2 cut(s)	226, 239
AgsI	TTSAA	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	197, 412
AluI	AGCT	2 cut(s)	197, 412
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	3 cut(s)	119, 132, 369
AoxI	GGCC	4 cut(s)	10, 31, 155, 329
ApeKI	GCWGC	2 cut(s)	197, 289
AspA2I	CCTAGG	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	4 cut(s)	11, 155, 251, 329
AvaII	GGWCC	1 cut(s)	251
AvrII	CCTAGG	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	184, 276
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	3 cut(s)	140, 159, 293
BfoI	RGCGCY	1 cut(s)	220
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	198, 290
BlnI	CCTAGG	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	2 cut(s)	199, 291
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	4 cut(s)	11, 155, 251, 329
BmiI	GGNNCC	3 cut(s)	126, 156, 231
BmrFI	CCNGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	158, 220
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 239
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	158, 220
BseLI	CCNNNNNNNGG	2 cut(s)	226, 239
BseMII	CTCAG	4 cut(s)	51, 75, 227, 312
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	184, 276
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	4 cut(s)	12, 33, 157, 331
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	2 cut(s)	226, 239
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	1 cut(s)	7
BsnI	GGCC	4 cut(s)	12, 33, 157, 331
Bso31I	GGTCTC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	124, 136, 361, 370
Bsp1720I	GCTNAGC	1 cut(s)	213
BspANI	GGCC	4 cut(s)	12, 33, 157, 331
BspCNI	CTCAG	4 cut(s)	52, 76, 226, 311
BspLI	GGNNCC	3 cut(s)	126, 156, 231
BspPI	GGATC	3 cut(s)	119, 132, 369
BspTNI	GGTCTC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	158, 220
BssMI	GATC	4 cut(s)	124, 136, 361, 370
BssT1I	CCWWGG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	237
Bst6I	CTCTTC	2 cut(s)	41, 80
BstC8I	GCNNGC	2 cut(s)	210, 333
BstDEI	CTNAG	6 cut(s)	60, 84, 213, 298, 312, 413
BstDSI	CCRYGG	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	4 cut(s)	127, 139, 364, 373
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	4 cut(s)	124, 136, 361, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	184, 276
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	124, 136
BstYI	RGATCY	2 cut(s)	124, 136
BsuRI	GGCC	4 cut(s)	12, 33, 157, 331
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	210, 333
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	4 cut(s)	11, 155, 251, 329
CviAII	CATG	1 cut(s)	167
DdeI	CTNAG	6 cut(s)	60, 84, 213, 298, 312, 413
DpnI	GATC	4 cut(s)	126, 138, 363, 372
DpnII	GATC	4 cut(s)	124, 136, 361, 370
Eam1104I	CTCTTC	2 cut(s)	41, 80
EarI	CTCTTC	2 cut(s)	41, 80
Eco130I	CCWWGG	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	1 cut(s)	170
FaiI	YATR	5 cut(s)	30, 80, 116, 168, 458
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	198, 290
Fsp4HI	GCNGC	2 cut(s)	198, 290
FspBI	CTAG	3 cut(s)	140, 159, 293
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	198, 290
GsuI	CTGGAG	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	4 cut(s)	12, 33, 157, 331
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	259, 296
Hpy188I	TCNGA	4 cut(s)	61, 111, 301, 454
Hpy188III	TCNNGA	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	56, 426, 466
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	6 cut(s)	60, 84, 213, 298, 312, 413
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	124, 136, 361, 370
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	184, 276
MaeI	CTAG	3 cut(s)	140, 159, 293
MaeII	ACGT	1 cut(s)	270
MalI	GATC	4 cut(s)	126, 138, 363, 372
MboI	GATC	4 cut(s)	124, 136, 361, 370
MboII	GAAGA	6 cut(s)	28, 31, 67, 200, 478, 481
MflI	RGATCY	2 cut(s)	124, 136
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	95, 143
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	321, 339
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	4 cut(s)	124, 136, 361, 370
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	3 cut(s)	126, 156, 231
PfeI	GAWTC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	199, 291
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	126, 156, 231
PspPI	GGNCC	4 cut(s)	11, 155, 251, 329
PsuI	RGATCY	2 cut(s)	124, 136
SatI	GCNGC	2 cut(s)	198, 290
Sau3AI	GATC	4 cut(s)	124, 136, 361, 370
Sau96I	GGNCC	4 cut(s)	11, 155, 251, 329
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	7 cut(s)	164, 199, 273, 288, 341, 390, 414
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	2 cut(s)	95, 143
SspMI	CTAG	3 cut(s)	140, 159, 293
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	158
TaiI	ACGT	1 cut(s)	273
TasI	AATT	2 cut(s)	95, 143
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	197, 289
TspDTI	ATGAA	2 cut(s)	67, 155
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	237
XbaI	TCTAGA	1 cut(s)	139
XmaJI	CCTAGG	1 cut(s)	158
XspI	CTAG	3 cut(s)	140, 159, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.