Rh5CG003000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016804
Physical Location & Seq
Forward (+)
225712 .. 225987
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG003000.1

Sequence Viewer

Length: 276 bp
ATGGCAAAAGGCCCATCTTTGTCCCAATATGGCCTCTTCTTCTTCCTTTGTCTCATCTCTGAGCCTTTCTCACTCTTCACAACTGAGCTCTCTCAATTTCCATGTTTCCCGATTCTGAGCGAGGAGCCAAATAGAGATTTGGAATTGTCGATGGTGCCTAGGTTTCATGGTGGCGACGGCGATCAGGAAGACAAAGCTGCACTCTGGCTGGCTCGGCGCCCCGGACAGGGATGTCACTGTCATCGGTGTCTAGCTCACCAGCTCTCCTGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

5.7

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 231
AccB1I GGYRCC 2 cut(s) 154, 216
AcyI GRCGYC 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 226, 227
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 4 cut(s) 88, 197, 254, 262
AluI AGCT 4 cut(s) 88, 197, 254, 262
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 2 cut(s) 10, 31
ApeKI GCWGC 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 158
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 248
AvrII CCTAGG 1 cut(s) 158
BanI GGYRCC 2 cut(s) 154, 216
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 22, 145
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 159, 251
BfoI RGCGCY 1 cut(s) 220
BisI GCNGC 1 cut(s) 198
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 222, 268
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 3 cut(s) 126, 156, 218
BmrFI CCNGG 2 cut(s) 222, 268
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 158, 220, 267
BsaXI ACNNNNNCTCC 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 227
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 3 cut(s) 158, 220, 267
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 226, 227
BseMII CTCAG 3 cut(s) 51, 75, 107
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 12, 33
BshNI GGYRCC 2 cut(s) 154, 216
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 226, 227
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 7
BsnI GGCC 2 cut(s) 12, 33
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 2 cut(s) 12, 33
BspCNI CTCAG 3 cut(s) 52, 76, 108
BspLI GGNNCC 3 cut(s) 126, 156, 218
BspT107I GGYRCC 2 cut(s) 154, 216
BssECI CCNNGG 3 cut(s) 158, 220, 267
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 41, 80
BstACI GRCGYC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 60, 84, 116
BstF5I GGATG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 220, 266
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 12, 33
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 11
CviAII CATG 2 cut(s) 102, 167
DdeI CTNAG 3 cut(s) 60, 84, 116
DinI GGCGCC 1 cut(s) 218
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DrdI GACNNNNNNGTC 1 cut(s) 231
DseDI GACNNNNNNGTC 1 cut(s) 231
Eam1104I CTCTTC 2 cut(s) 41, 80
EarI CTCTTC 2 cut(s) 41, 80
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 218
EheI GGCGCC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 105, 170
FaiI YATR 3 cut(s) 30, 103, 168
FaqI GGGAC 1 cut(s) 7
FatI CATG 2 cut(s) 101, 166
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 159, 251
GlaI GCGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 2 cut(s) 12, 33
HapII CCGG 1 cut(s) 222
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 2 cut(s) 105, 170
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 61, 117
Hpy188III TCNNGA 2 cut(s) 109, 185
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 3 cut(s) 60, 84, 116
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 2 cut(s) 105, 170
HspAI GCGC 1 cut(s) 217
KasI GGCGCC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 170, 190, 194, 212, 235, 253, 272
Lsp1109I GCAGC 1 cut(s) 184
MaeI CTAG 2 cut(s) 159, 251
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 5 cut(s) 28, 31, 34, 67, 200
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 2 cut(s) 95, 143
Mly113I GGCGCC 1 cut(s) 217
MnlI CCTC 2 cut(s) 44, 115
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 222, 268
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 214
NarI GGCGCC 1 cut(s) 217
NciI CCSGG 1 cut(s) 222
NdeII GATC 1 cut(s) 181
NlaIII CATG 2 cut(s) 105, 170
NlaIV GGNNCC 3 cut(s) 126, 156, 218
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 3 cut(s) 126, 156, 218
PspPI GGNCC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 90
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 222, 268
SduI GDGCHC 1 cut(s) 90
SetI ASST 5 cut(s) 90, 164, 199, 256, 264
SfoI GGCGCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 95, 143
SspDI GGCGCC 1 cut(s) 216
SspMI CTAG 2 cut(s) 159, 251
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 220, 266
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 149
TasI AATT 2 cut(s) 95, 143
TfiI GAWTC 1 cut(s) 112
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 155
TspRI CASTG 1 cut(s) 242
XmaJI CCTAGG 1 cut(s) 158
XspI CTAG 2 cut(s) 159, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.