Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016804

Physical Location & Seq

Genomic Coordinates Forward (+)

16171430 .. 16171860

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG183200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCACTGTCACCGGTGTCCAGCTCACCAGCTCTCCTGGGGTTGAGGCCGTCGTCCCGGGAACTACACCATCCAGACCACCTAAACCGCCACCAAACTGAAATTTCTCATCAAACCCACCTTGAATTTCTTCAAGACCAAAAGCTTGAACACCGCCAACCTCAGCCCCTCTGCCATTTCCACCACCTCAAAACTAACACCTCTACCATCAAGCCCACCCAGGAGCCTCCAGGAGGCTTTGCTGGACCAGTGATTCACCGCGATGTGAAGCCCAACAAGGTGCTACTCGACTCTGATTTCAATGCCAAGATTGACGATTTTGGGCCTGCGAGGTTGGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

114

Amino Acids

12.88

Weight (kDa)

6.83

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016804)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33041 FvH4_6g30612
malus_domestica	MD01G1131900.v1.1
rosa_multiflora	Rmu_sc0001148.1_g000007 Rmu_sc0002131.1_g000017 Rmu_sc0005339.1_g000002
rosa_roxburghii	Rroxscaffold_5G00343790
rosa_samantha	Rh1AG016900 Rh3BG183200 Rh4DG315300 Rh5AG002700 Rh5CG003000 Rh5CG565900 Rh7BG216300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	3 cut(s)	88, 154, 259
AcsI	RAATTY	2 cut(s)	102, 125
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	4 cut(s)	125, 134, 149, 301
AjnI	CCWGG	3 cut(s)	36, 219, 229
AluBI	AGCT	3 cut(s)	24, 32, 145
AluI	AGCT	3 cut(s)	24, 32, 145
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	47, 323
ApoI	RAATTY	2 cut(s)	102, 125
AsiGI	ACCGGT	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	245, 323
AsuC2I	CCSGG	2 cut(s)	58, 59
AsuHPI	GGTGA	3 cut(s)	3, 18, 248
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	78, 215
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	3 cut(s)	38, 221, 231
BcnI	CCSGG	2 cut(s)	58, 59
Bme1390I	CCNGG	5 cut(s)	38, 58, 59, 221, 231
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	245, 323
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	5 cut(s)	38, 58, 59, 221, 231
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	162
BpuMI	CCSGG	2 cut(s)	58, 59
BsaJI	CCNNGG	3 cut(s)	37, 57, 219
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	3 cut(s)	38, 221, 231
BseDI	CCNNGG	3 cut(s)	37, 57, 219
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	49, 325
BshTI	ACCGGT	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	14, 58
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	49, 325
BsoBI	CYCGRG	1 cut(s)	57
BspACI	CCGC	3 cut(s)	88, 154, 259
BspANI	GGCC	2 cut(s)	49, 325
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	37, 57, 219
Bst2UI	CCWGG	3 cut(s)	38, 221, 231
Bst4CI	ACNGT	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	261
BstNI	CCWGG	3 cut(s)	38, 221, 231
BstSCI	CCNGG	5 cut(s)	36, 56, 57, 219, 229
BstUI	CGCG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	49, 325
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	5, 255
Cac8I	GCNNGC	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	245, 323
Cfr9I	CCCGGG	1 cut(s)	57
CspAI	ACCGGT	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoRII	CCWGG	3 cut(s)	36, 219, 229
FaiI	YATR	1 cut(s)	343
FaqI	GGGAC	1 cut(s)	40
FokI	GGATG	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	49, 325
HapII	CCGG	2 cut(s)	14, 58
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	253, 290
HpaII	CCGG	2 cut(s)	14, 58
HphI	GGTGA	3 cut(s)	3, 18, 248
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	2 cut(s)	74, 134
Hpy99I	CGWCG	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	3, 9
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	2 cut(s)	102, 125
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	8 cut(s)	39, 171, 179, 197, 211, 227, 237, 324
MroXI	GAANNNNTTC	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	2 cut(s)	14, 58
MspR9I	CCNGG	5 cut(s)	38, 58, 59, 221, 231
MvaI	CCWGG	3 cut(s)	38, 221, 231
MvnI	CGCG	1 cut(s)	261
NciI	CCSGG	2 cut(s)	58, 59
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	3, 9
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	13
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	36, 219, 229
PspGI	CCWGG	3 cut(s)	36, 219, 229
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	245, 323
RseI	CAYNNNNRTG	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	245, 323
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	5 cut(s)	38, 58, 59, 221, 231
SgrAI	CRCCGGYG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	245
SmaI	CCCGGG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	102, 125
SsiI	CCGC	3 cut(s)	88, 154, 259
StyD4I	CCNGG	5 cut(s)	36, 56, 57, 219, 229
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	102, 125
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	2 cut(s)	12, 255
TseFI	GTSAC	2 cut(s)	3, 9
Tsp45I	GTSAC	2 cut(s)	3, 9
TspMI	CCCGGG	1 cut(s)	57
TspRI	CASTG	2 cut(s)	12, 255
VpaK11BI	GGWCC	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	231
XapI	RAATTY	2 cut(s)	102, 125
XmaI	CCCGGG	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.