Small subunit processome component 20 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G30990 AT4G30990 AT4G30990 |
| fragaria_vesca | FvH4_6g30710 FvH4_6g30710 FvH4_6g30710 FvH4_6g30710 FvH4_6g30710 FvH4_6g30710 FvH4_6g30710 |
| malus_domestica | MD17G1201300.v1.1 |
| prunus_persica | Prupe.3G074200_v2.0.a1 Prupe.3G074200_v2.0.a1 Prupe.3G074200_v2.0.a1 Prupe.3G077100_v2.0.a1 Prupe.3G077100_v2.0.a1 Prupe.3G077100_v2.0.a1 |
| pyrus_communis | pycom17g20520 |
| rosa_chinensis | RchiOBHm_Chr2g0137101 |
| rosa_laevigata | RLG00000019624 |
| rosa_multiflora | Rmu_sc0000894.1_g000061 |
| rosa_roxburghii | Rroxscaffold_2G00107570 |
| rosa_rugosa | Rorug02G0338800 Rorug02G0338800 |
| rosa_samantha | Rh2AG387300 Rh2BG395000 Rh2CG374600 Rh2DG410200 |
| rosa_wichuraiana | Rw2G031740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 5672, 7223 |
| AarI | CACCTGC | 1 cut(s) | 5912 |
| AatII | GACGTC | 2 cut(s) | 11, 7771 |
| Acc36I | ACCTGC | 2 cut(s) | 5912, 6148 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1813 |
| AccI | GTMKAC | 3 cut(s) | 4656, 5423, 7771 |
| AccIII | TCCGGA | 1 cut(s) | 2979 |
| AcoI | YGGCCR | 3 cut(s) | 2392, 3640, 5911 |
| AcuI | CTGAAG | 7 cut(s) | 1134, 2078, 2223, 2790, 3792, 6386, 7292 |
| AcyI | GRCGYC | 5 cut(s) | 8, 55, 239, 5696, 7768 |
| AdeI | CACNNNGTG | 2 cut(s) | 6635, 7335 |
| AfeI | AGCGCT | 3 cut(s) | 2441, 5317, 7871 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 152, 1554, 1555, 1813, 2979, 3237, 4121, 5468, 7585 |
| AflII | CTTAAG | 2 cut(s) | 1714, 2699 |
| AflIII | ACRYGT | 5 cut(s) | 2320, 2653, 3301, 4413, 7116 |
| AgeI | ACCGGT | 1 cut(s) | 2253 |
| AhlI | ACTAGT | 2 cut(s) | 3886, 7282 |
| AjnI | CCWGG | 8 cut(s) | 151, 378, 485, 2850, 2900, 3952, 4266, 5218 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3264, 3296, 7223, 7255 |
| AleI | CACNNNNGTG | 3 cut(s) | 3709, 6576, 7117 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3324, 3356, 4499, 4531 |
| Alw21I | GWGCWC | 7 cut(s) | 528, 1404, 1429, 3158, 4063, 4326, 6573 |
| Alw26I | GTCTC | 9 cut(s) | 82, 432, 991, 3911, 3953, 4401, 5069, 6746, 7549 |
| Alw44I | GTGCAC | 2 cut(s) | 524, 1400 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1645, 3770, 6823 |
| Ama87I | CYCGRG | 1 cut(s) | 369 |
| Aor13HI | TCCGGA | 1 cut(s) | 2979 |
| Aor51HI | AGCGCT | 3 cut(s) | 2441, 5317, 7871 |
| AoxI | GGCC | 9 cut(s) | 24, 1317, 1545, 2179, 2392, 3640, 5800, 5911, 7935 |
| ApaLI | GTGCAC | 2 cut(s) | 524, 1400 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 3572, 3604, 5693, 5725, 6329, 6361 |
| AseI | ATTAAT | 2 cut(s) | 815, 6302 |
| AsiGI | ACCGGT | 1 cut(s) | 2253 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 2334, 3206, 3276, 3500, 6291, 6459, 7029 |
| AspLEI | GCGC | 4 cut(s) | 2442, 4581, 5318, 7872 |
| AspS9I | GGNCC | 8 cut(s) | 247, 1317, 1546, 2179, 3308, 3580, 6337, 7935 |
| AsuC2I | CCSGG | 4 cut(s) | 370, 371, 3853, 4018 |
| AsuHPI | GGTGA | 9 cut(s) | 1012, 1726, 3610, 4516, 5655, 5852, 6737, 6821, 7373 |
| AsuII | TTCGAA | 1 cut(s) | 906 |
| AvaI | CYCGRG | 1 cut(s) | 369 |
| AvaII | GGWCC | 4 cut(s) | 247, 3308, 3580, 6337 |
| AxyI | CCTNAGG | 1 cut(s) | 1646 |
| BaeGI | GKGCMC | 3 cut(s) | 528, 1404, 2949 |
| BaeI | ACNNNNGTAYC | 3 cut(s) | 3857, 3890, 7973 |
| BalI | TGGCCA | 2 cut(s) | 2394, 3642 |
| BamHI | GGATCC | 2 cut(s) | 1443, 6037 |
| BanII | GRGCYC | 3 cut(s) | 1216, 3158, 4063 |
| BauI | CACGAG | 1 cut(s) | 227 |
| BbsI | GAAGAC | 5 cut(s) | 61, 106, 2954, 3849, 7603 |
| Bbv12I | GWGCWC | 7 cut(s) | 528, 1404, 1429, 3158, 4063, 4326, 6573 |
| BceAI | ACGGC | 5 cut(s) | 11, 219, 226, 3495, 5898 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 312, 346, 5025, 5059 |
| BciT130I | CCWGG | 8 cut(s) | 153, 380, 487, 2852, 2902, 3954, 4268, 5220 |
| BciVI | GTATCC | 1 cut(s) | 3339 |
| BclI | TGATCA | 2 cut(s) | 1188, 5770 |
| BcnI | CCSGG | 4 cut(s) | 370, 371, 3853, 4018 |
| BcoDI | GTCTC | 9 cut(s) | 82, 432, 991, 3911, 3953, 4401, 5069, 6746, 7549 |
| BcuI | ACTAGT | 2 cut(s) | 3886, 7282 |
| BfmI | CTRYAG | 3 cut(s) | 1914, 3363, 4721 |
| BfoI | RGCGCY | 3 cut(s) | 2443, 5319, 7873 |
| BfrI | CTTAAG | 2 cut(s) | 1714, 2699 |
| BfuAI | ACCTGC | 2 cut(s) | 5912, 6148 |
| BfuI | GTATCC | 1 cut(s) | 3339 |
| BglII | AGATCT | 3 cut(s) | 3506, 5494, 7629 |
| BlpI | GCTNAGC | 1 cut(s) | 2436 |
| BmcAI | AGTACT | 5 cut(s) | 3039, 3361, 4119, 5205, 5386 |
| Bme18I | GGWCC | 4 cut(s) | 247, 3308, 3580, 6337 |
| BmeT110I | CYCGRG | 1 cut(s) | 369 |
| BmgT120I | GGNCC | 8 cut(s) | 247, 1317, 1546, 2179, 3308, 3580, 6337, 7935 |
| BmrI | ACTGGG | 1 cut(s) | 1867 |
| BmuI | ACTGGG | 1 cut(s) | 1867 |
| BpiI | GAAGAC | 5 cut(s) | 61, 106, 2954, 3849, 7603 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 67, 99, 7166, 7198 |
| BpmI | CTGGAG | 3 cut(s) | 401, 2492, 5241 |
| Bpu10I | CCTNAGC | 2 cut(s) | 21, 7183 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2436 |
| Bpu14I | TTCGAA | 1 cut(s) | 906 |
| BpuEI | CTTGAG | 6 cut(s) | 4047, 4456, 6803, 7091, 7541, 7817 |
| BpuMI | CCSGG | 4 cut(s) | 370, 371, 3853, 4018 |
| Bsa29I | ATCGAT | 4 cut(s) | 108, 1635, 6945, 7039 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2240, 4731, 7065, 7512 |
| BsaHI | GRCGYC | 5 cut(s) | 8, 55, 239, 5696, 7768 |
| BsaI | GGTCTC | 1 cut(s) | 5069 |
| BsaWI | WCCGGW | 3 cut(s) | 2253, 2979, 6313 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 4499, 4529 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 152, 1554, 1555, 1813, 2979, 3237, 4121, 5468, 7585 |
| Bse118I | RCCGGY | 1 cut(s) | 2253 |
| Bse21I | CCTNAGG | 1 cut(s) | 1646 |
| Bse3DI | GCAATG | 7 cut(s) | 254, 1214, 2360, 3096, 3104, 4552, 4800 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2240, 4731, 7065, 7512 |
| BseAI | TCCGGA | 1 cut(s) | 2979 |
| BseBI | CCWGG | 8 cut(s) | 153, 380, 487, 2852, 2902, 3954, 4268, 5220 |
| BseCI | ATCGAT | 4 cut(s) | 108, 1635, 6945, 7039 |
| BseJI | GATNNNNATC | 4 cut(s) | 2240, 4731, 7065, 7512 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 152, 1554, 1555, 1813, 2979, 3237, 4121, 5468, 7585 |
| BseMI | GCAATG | 7 cut(s) | 254, 1214, 2360, 3096, 3104, 4552, 4800 |
| BseRI | GAGGAG | 4 cut(s) | 2112, 5877, 6957, 7088 |
| BseSI | GKGCMC | 3 cut(s) | 528, 1404, 2949 |
| BsgI | GTGCAG | 6 cut(s) | 621, 1148, 3471, 4173, 6852, 7392 |
| BshFI | GGCC | 9 cut(s) | 26, 1319, 1547, 2181, 2394, 3642, 5802, 5913, 7937 |
| BshTI | ACCGGT | 1 cut(s) | 2253 |
| BshVI | ATCGAT | 4 cut(s) | 108, 1635, 6945, 7039 |
| BsiHKAI | GWGCWC | 7 cut(s) | 528, 1404, 1429, 3158, 4063, 4326, 6573 |
| BsiHKCI | CYCGRG | 1 cut(s) | 369 |
| BsiSI | CCGG | 7 cut(s) | 51, 370, 2254, 2980, 3852, 4018, 6314 |
| BslFI | GGGAC | 9 cut(s) | 19, 352, 518, 3593, 3716, 4645, 6350, 7732, 7859 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 152, 1554, 1555, 1813, 2979, 3237, 4121, 5468, 7585 |
| BsmAI | GTCTC | 9 cut(s) | 82, 432, 991, 3911, 3953, 4401, 5069, 6746, 7549 |
| BsmBI | CGTCTC | 3 cut(s) | 3911, 6746, 7549 |
| BsmFI | GGGAC | 9 cut(s) | 19, 352, 518, 3593, 3716, 4645, 6350, 7732, 7859 |
| BsmI | GAATGC | 7 cut(s) | 914, 4282, 4572, 4816, 7325, 7345, 7903 |
| BsnI | GGCC | 9 cut(s) | 26, 1319, 1547, 2181, 2394, 3642, 5802, 5913, 7937 |
| Bso31I | GGTCTC | 1 cut(s) | 5069 |
| BsoBI | CYCGRG | 1 cut(s) | 369 |
| Bsp119I | TTCGAA | 1 cut(s) | 906 |
| Bsp1286I | GDGCHC | 9 cut(s) | 528, 1216, 1404, 1429, 2949, 3158, 4063, 4326, 6573 |
| Bsp13I | TCCGGA | 1 cut(s) | 2979 |
| Bsp1407I | TGTACA | 2 cut(s) | 5794, 6016 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2436 |
| BspANI | GGCC | 9 cut(s) | 26, 1319, 1547, 2181, 2394, 3642, 5802, 5913, 7937 |
| BspDI | ATCGAT | 4 cut(s) | 108, 1635, 6945, 7039 |
| BspEI | TCCGGA | 1 cut(s) | 2979 |
| BspHI | TCATGA | 7 cut(s) | 1531, 3556, 6873, 6958, 6970, 7045, 7242 |
| BspMI | ACCTGC | 2 cut(s) | 5912, 6148 |
| BspQI | GCTCTTC | 1 cut(s) | 3063 |
| BspT104I | TTCGAA | 1 cut(s) | 906 |
| BspTI | CTTAAG | 2 cut(s) | 1714, 2699 |
| BspTNI | GGTCTC | 1 cut(s) | 5069 |
| BsrDI | GCAATG | 7 cut(s) | 254, 1214, 2360, 3096, 3104, 4552, 4800 |
| BsrFI | RCCGGY | 1 cut(s) | 2253 |
| BsrGI | TGTACA | 2 cut(s) | 5794, 6016 |
| BssAI | RCCGGY | 1 cut(s) | 2253 |
| BssNAI | GTATAC | 1 cut(s) | 5424 |
| BssNI | GRCGYC | 5 cut(s) | 8, 55, 239, 5696, 7768 |
| BssSI | CACGAG | 1 cut(s) | 227 |
| BssT1I | CCWWGG | 3 cut(s) | 885, 1447, 4702 |
| Bst1107I | GTATAC | 1 cut(s) | 5424 |
| Bst2BI | CACGAG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 8 cut(s) | 153, 380, 487, 2852, 2902, 3954, 4268, 5220 |
| Bst6I | CTCTTC | 3 cut(s) | 3063, 3665, 4619 |
| BstACI | GRCGYC | 5 cut(s) | 8, 55, 239, 5696, 7768 |
| BstAFI | CTTAAG | 2 cut(s) | 1714, 2699 |
| BstAUI | TGTACA | 2 cut(s) | 5794, 6016 |
| BstBI | TTCGAA | 1 cut(s) | 906 |
| BstC8I | GCNNGC | 5 cut(s) | 18, 4935, 6573, 7538, 7661 |
| BstH2I | RGCGCY | 3 cut(s) | 2443, 5319, 7873 |
| BstHHI | GCGC | 4 cut(s) | 2442, 4581, 5318, 7872 |
| BstMAI | GTCTC | 9 cut(s) | 82, 432, 991, 3911, 3953, 4401, 5069, 6746, 7549 |
| BstNI | CCWGG | 8 cut(s) | 153, 380, 487, 2852, 2902, 3954, 4268, 5220 |
| BstNSI | RCATGY | 9 cut(s) | 2324, 2657, 2999, 3266, 3305, 4417, 5414, 7120, 7663 |
| BstSFI | CTRYAG | 3 cut(s) | 1914, 3363, 4721 |
| BstSLI | GKGCMC | 3 cut(s) | 528, 1404, 2949 |
| BstV2I | GAAGAC | 5 cut(s) | 61, 106, 2954, 3849, 7603 |
| BstX2I | RGATCY | 8 cut(s) | 373, 1443, 3506, 5494, 6037, 6927, 7066, 7629 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 7119 |
| BstYI | RGATCY | 8 cut(s) | 373, 1443, 3506, 5494, 6037, 6927, 7066, 7629 |
| BstZ17I | GTATAC | 1 cut(s) | 5424 |
| Bsu15I | ATCGAT | 4 cut(s) | 108, 1635, 6945, 7039 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1646 |
| BsuI | GTATCC | 1 cut(s) | 3339 |
| BsuRI | GGCC | 9 cut(s) | 26, 1319, 1547, 2181, 2394, 3642, 5802, 5913, 7937 |
| BsuTUI | ATCGAT | 4 cut(s) | 108, 1635, 6945, 7039 |
| BtgZI | GCGATG | 4 cut(s) | 1871, 2031, 3011, 5243 |
| BtsI | GCAGTG | 4 cut(s) | 977, 3459, 3704, 6180 |
| BveI | ACCTGC | 2 cut(s) | 5912, 6148 |
| Cac8I | GCNNGC | 5 cut(s) | 18, 4935, 6573, 7538, 7661 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1645, 3770, 6823 |
| CciI | TCATGA | 7 cut(s) | 1531, 3556, 6873, 6958, 6970, 7045, 7242 |
| CfoI | GCGC | 4 cut(s) | 2442, 4581, 5318, 7872 |
| Cfr10I | RCCGGY | 1 cut(s) | 2253 |
| Cfr13I | GGNCC | 8 cut(s) | 247, 1317, 1546, 2179, 3308, 3580, 6337, 7935 |
| Cfr9I | CCCGGG | 1 cut(s) | 369 |
| ClaI | ATCGAT | 4 cut(s) | 108, 1635, 6945, 7039 |
| CseI | GACGC | 5 cut(s) | 63, 247, 4226, 5704, 7508 |
| CsiI | ACCWGGT | 1 cut(s) | 2850 |
| CspAI | ACCGGT | 1 cut(s) | 2253 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 817, 852 |
| DraI | TTTAAA | 5 cut(s) | 1491, 1926, 2226, 5391, 6168 |
| DraIII | CACNNNGTG | 2 cut(s) | 6635, 7335 |
| EaeI | YGGCCR | 3 cut(s) | 2392, 3640, 5911 |
| Eam1104I | CTCTTC | 3 cut(s) | 3063, 3665, 4619 |
| EarI | CTCTTC | 3 cut(s) | 3063, 3665, 4619 |
| EciI | GGCGGA | 3 cut(s) | 37, 221, 6928 |
| Ecl136II | GAGCTC | 2 cut(s) | 3156, 4061 |
| Eco130I | CCWWGG | 3 cut(s) | 885, 1447, 4702 |
| Eco24I | GRGCYC | 3 cut(s) | 1216, 3158, 4063 |
| Eco31I | GGTCTC | 1 cut(s) | 5069 |
| Eco32I | GATATC | 1 cut(s) | 6328 |
| Eco47I | GGWCC | 4 cut(s) | 247, 3308, 3580, 6337 |
| Eco47III | AGCGCT | 3 cut(s) | 2441, 5317, 7871 |
| Eco53kI | GAGCTC | 2 cut(s) | 3156, 4061 |
| Eco57I | CTGAAG | 7 cut(s) | 1134, 2078, 2223, 2790, 3792, 6386, 7292 |
| Eco81I | CCTNAGG | 1 cut(s) | 1646 |
| Eco88I | CYCGRG | 1 cut(s) | 369 |
| EcoICRI | GAGCTC | 2 cut(s) | 3156, 4061 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3580, 6337 |
| EcoRI | GAATTC | 2 cut(s) | 3179, 3572 |
| EcoRII | CCWGG | 8 cut(s) | 151, 378, 485, 2850, 2900, 3952, 4266, 5218 |
| EcoRV | GATATC | 1 cut(s) | 6328 |
| EcoT14I | CCWWGG | 3 cut(s) | 885, 1447, 4702 |
| EcoT22I | ATGCAT | 5 cut(s) | 497, 3298, 4384, 4459, 5987 |
| EcoT38I | GRGCYC | 3 cut(s) | 1216, 3158, 4063 |
| ErhI | CCWWGG | 3 cut(s) | 885, 1447, 4702 |
| Esp3I | CGTCTC | 3 cut(s) | 3911, 6746, 7549 |
| FaqI | GGGAC | 9 cut(s) | 19, 352, 518, 3593, 3716, 4645, 6350, 7732, 7859 |
| FauI | CCCGC | 2 cut(s) | 1663, 6252 |
| FauNDI | CATATG | 2 cut(s) | 4100, 4608 |
| FbaI | TGATCA | 2 cut(s) | 1188, 5770 |
| FblI | GTMKAC | 3 cut(s) | 4656, 5423, 7771 |
| FriOI | GRGCYC | 3 cut(s) | 1216, 3158, 4063 |
| GlaI | GCGC | 4 cut(s) | 2441, 4580, 5317, 7871 |
| GsuI | CTGGAG | 3 cut(s) | 401, 2492, 5241 |
| HaeII | RGCGCY | 3 cut(s) | 2443, 5319, 7873 |
| HaeIII | GGCC | 9 cut(s) | 26, 1319, 1547, 2181, 2394, 3642, 5802, 5913, 7937 |
| HapII | CCGG | 7 cut(s) | 51, 370, 2254, 2980, 3852, 4018, 6314 |
| HgaI | GACGC | 5 cut(s) | 63, 247, 4226, 5704, 7508 |
| HhaI | GCGC | 4 cut(s) | 2442, 4581, 5318, 7872 |
| Hin1I | GRCGYC | 5 cut(s) | 8, 55, 239, 5696, 7768 |
| Hin6I | GCGC | 4 cut(s) | 2440, 4579, 5316, 7870 |
| HinP1I | GCGC | 4 cut(s) | 2440, 4579, 5316, 7870 |
| HincII | GTYRAC | 4 cut(s) | 415, 2118, 4657, 5179 |
| HindII | GTYRAC | 4 cut(s) | 415, 2118, 4657, 5179 |
| HindIII | AAGCTT | 4 cut(s) | 2205, 5654, 6386, 7534 |
| HpaI | GTTAAC | 1 cut(s) | 5179 |
| HpaII | CCGG | 7 cut(s) | 51, 370, 2254, 2980, 3852, 4018, 6314 |
| HphI | GGTGA | 9 cut(s) | 1012, 1726, 3610, 4516, 5655, 5852, 6737, 6821, 7373 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 470, 5880 |
| Hsp92I | GRCGYC | 5 cut(s) | 8, 55, 239, 5696, 7768 |
| HspAI | GCGC | 4 cut(s) | 2440, 4579, 5316, 7870 |
| KflI | GGGWCCC | 1 cut(s) | 6337 |
| Kpn2I | TCCGGA | 1 cut(s) | 2979 |
| Ksp22I | TGATCA | 2 cut(s) | 1188, 5770 |
| KspAI | GTTAAC | 1 cut(s) | 5179 |
| LguI | GCTCTTC | 1 cut(s) | 3063 |
| MabI | ACCWGGT | 1 cut(s) | 2850 |
| MflI | RGATCY | 8 cut(s) | 373, 1443, 3506, 5494, 6037, 6927, 7066, 7629 |
| MhlI | GDGCHC | 9 cut(s) | 528, 1216, 1404, 1429, 2949, 3158, 4063, 4326, 6573 |
| MlsI | TGGCCA | 2 cut(s) | 2394, 3642 |
| MluNI | TGGCCA | 2 cut(s) | 2394, 3642 |
| MmeI | TCCRAC | 5 cut(s) | 2439, 2486, 5328, 5786, 6015 |
| Mox20I | TGGCCA | 2 cut(s) | 2394, 3642 |
| Mph1103I | ATGCAT | 5 cut(s) | 497, 3298, 4384, 4459, 5987 |
| MroI | TCCGGA | 1 cut(s) | 2979 |
| MroXI | GAANNNNTTC | 7 cut(s) | 2334, 3206, 3276, 3500, 6291, 6459, 7029 |
| MscI | TGGCCA | 2 cut(s) | 2394, 3642 |
| MslI | CAYNNNNRTG | 5 cut(s) | 2284, 3709, 4928, 6576, 7117 |
| Msp20I | TGGCCA | 2 cut(s) | 2394, 3642 |
| MspA1I | CMGCKG | 2 cut(s) | 1264, 5744 |
| MspCI | CTTAAG | 2 cut(s) | 1714, 2699 |
| MspI | CCGG | 7 cut(s) | 51, 370, 2254, 2980, 3852, 4018, 6314 |
| Mva1269I | GAATGC | 7 cut(s) | 914, 4282, 4572, 4816, 7325, 7345, 7903 |
| MvaI | CCWGG | 8 cut(s) | 153, 380, 487, 2852, 2902, 3954, 4268, 5220 |
| NciI | CCSGG | 4 cut(s) | 370, 371, 3853, 4018 |
| NdeI | CATATG | 2 cut(s) | 4100, 4608 |
| NmeAIII | GCCGAG | 2 cut(s) | 429, 5563 |
| NmuCI | GTSAC | 8 cut(s) | 975, 4127, 4816, 5732, 6046, 6916, 6952, 7496 |
| NsiI | ATGCAT | 5 cut(s) | 497, 3298, 4384, 4459, 5987 |
| NspI | RCATGY | 9 cut(s) | 2324, 2657, 2999, 3266, 3305, 4417, 5414, 7120, 7663 |
| NspV | TTCGAA | 1 cut(s) | 906 |
| OliI | CACNNNNGTG | 3 cut(s) | 3709, 6576, 7117 |
| PaeI | GCATGC | 1 cut(s) | 7663 |
| PagI | TCATGA | 7 cut(s) | 1531, 3556, 6873, 6958, 6970, 7045, 7242 |
| PaqCI | CACCTGC | 1 cut(s) | 5912 |
| PasI | CCCWGGG | 1 cut(s) | 3953 |
| PciI | ACATGT | 5 cut(s) | 2320, 2653, 3301, 4413, 7116 |
| PciSI | GCTCTTC | 1 cut(s) | 3063 |
| PctI | GAATGC | 7 cut(s) | 914, 4282, 4572, 4816, 7325, 7345, 7903 |
| PdmI | GAANNNNTTC | 7 cut(s) | 2334, 3206, 3276, 3500, 6291, 6459, 7029 |
| PflFI | GACNNNGTC | 1 cut(s) | 5874 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1813 |
| PfoI | TCCNGGA | 2 cut(s) | 378, 4266 |
| PinAI | ACCGGT | 1 cut(s) | 2253 |
| PpuMI | RGGWCCY | 2 cut(s) | 3580, 6337 |
| PscI | ACATGT | 5 cut(s) | 2320, 2653, 3301, 4413, 7116 |
| PshBI | ATTAAT | 2 cut(s) | 815, 6302 |
| PsiI | TTATAA | 2 cut(s) | 5672, 7223 |
| Psp124BI | GAGCTC | 2 cut(s) | 3158, 4063 |
| Psp5II | RGGWCCY | 2 cut(s) | 3580, 6337 |
| Psp6I | CCWGG | 8 cut(s) | 151, 378, 485, 2850, 2900, 3952, 4266, 5218 |
| PspGI | CCWGG | 8 cut(s) | 151, 378, 485, 2850, 2900, 3952, 4266, 5218 |
| PspPI | GGNCC | 8 cut(s) | 247, 1317, 1546, 2179, 3308, 3580, 6337, 7935 |
| PspPPI | RGGWCCY | 2 cut(s) | 3580, 6337 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3774, 3806 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1645, 3770, 6823 |
| PsuI | RGATCY | 8 cut(s) | 373, 1443, 3506, 5494, 6037, 6927, 7066, 7629 |
| PsyI | GACNNNGTC | 1 cut(s) | 5874 |
| PvuII | CAGCTG | 2 cut(s) | 1264, 5744 |
| RseI | CAYNNNNRTG | 5 cut(s) | 2284, 3709, 4928, 6576, 7117 |
| SacI | GAGCTC | 2 cut(s) | 3158, 4063 |
| SalI | GTCGAC | 1 cut(s) | 4655 |
| SapI | GCTCTTC | 1 cut(s) | 3063 |
| Sau96I | GGNCC | 8 cut(s) | 247, 1317, 1546, 2179, 3308, 3580, 6337, 7935 |
| ScaI | AGTACT | 5 cut(s) | 3039, 3361, 4119, 5205, 5386 |
| SduI | GDGCHC | 9 cut(s) | 528, 1216, 1404, 1429, 2949, 3158, 4063, 4326, 6573 |
| SexAI | ACCWGGT | 1 cut(s) | 2850 |
| SfcI | CTRYAG | 3 cut(s) | 1914, 3363, 4721 |
| SfuI | TTCGAA | 1 cut(s) | 906 |
| SinI | GGWCC | 4 cut(s) | 247, 3308, 3580, 6337 |
| SmaI | CCCGGG | 1 cut(s) | 371 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 2284, 3709, 4928, 6576, 7117 |
| SmlI | CTYRAG | 8 cut(s) | 1714, 2699, 4062, 4435, 6782, 7070, 7556, 7832 |
| SmoI | CTYRAG | 8 cut(s) | 1714, 2699, 4062, 4435, 6782, 7070, 7556, 7832 |
| SpeI | ACTAGT | 2 cut(s) | 3886, 7282 |
| SphI | GCATGC | 1 cut(s) | 7663 |
| SspI | AATATT | 8 cut(s) | 1666, 1989, 2367, 3223, 3984, 4144, 4759, 7528 |
| SstI | GAGCTC | 2 cut(s) | 3158, 4063 |
| StyI | CCWWGG | 3 cut(s) | 885, 1447, 4702 |
| TaqII | GACCGA | 1 cut(s) | 7434 |
| TauI | GCSGC | 2 cut(s) | 60, 63 |
| TseFI | GTSAC | 8 cut(s) | 975, 4127, 4816, 5732, 6046, 6916, 6952, 7496 |
| Tsp45I | GTSAC | 8 cut(s) | 975, 4127, 4816, 5732, 6046, 6916, 6952, 7496 |
| TspGWI | ACGGA | 4 cut(s) | 2948, 3745, 4307, 5288 |
| TspMI | CCCGGG | 1 cut(s) | 369 |
| Tth111I | GACNNNGTC | 1 cut(s) | 5874 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1813 |
| Vha464I | CTTAAG | 2 cut(s) | 1714, 2699 |
| VneI | GTGCAC | 2 cut(s) | 524, 1400 |
| VpaK11BI | GGWCC | 4 cut(s) | 247, 3308, 3580, 6337 |
| VspI | ATTAAT | 2 cut(s) | 815, 6302 |
| XbaI | TCTAGA | 5 cut(s) | 773, 2165, 3014, 3683, 4183 |
| XceI | RCATGY | 9 cut(s) | 2324, 2657, 2999, 3266, 3305, 4417, 5414, 7120, 7663 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4249 |
| XmaI | CCCGGG | 1 cut(s) | 369 |
| XmiI | GTMKAC | 3 cut(s) | 4656, 5423, 7771 |
| XmnI | GAANNNNTTC | 7 cut(s) | 2334, 3206, 3276, 3500, 6291, 6459, 7029 |
| ZraI | GACGTC | 2 cut(s) | 9, 7769 |
| ZrmI | AGTACT | 5 cut(s) | 3039, 3361, 4119, 5205, 5386 |
| Zsp2I | ATGCAT | 5 cut(s) | 497, 3298, 4384, 4459, 5987 |