RchiOBHm_Chr2g0137101

Small subunit processome component 20 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005459
Physical Location & Seq
Forward (+)
54611628 .. 54627892
16265 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50788

Sequence Viewer

Length: 8004 bp
ATGGCAACCTCTTCACAAGCTCAGGCCGTCAAGTCCCTCAACAAATCCGCCGGCCGCCGCCGCTTTGTCTTCAAGAGCGTCTCTGAGAGACTAGAAGAAGTCGAAATCGATGTCTTCCGAAGCCTCGATAAGCTAAAGGACGAGCCTTCCCCAGGCTCCACGTTTTTCCGGGACTGCCTCGTAGAATGGAGGGAATTGAATACCGCAGAGGATTTCATCTCATTCCACGAGCAGATGACGCCGTTGGTCCAGACATTGCCTTTGATATTGTTGCACAAGGAGACCATTTTCGAAGCATTGGTTTCTAGATTGCAAATCAGTGCAAGGTTATCGCTTGAGCCTATTCTCAGGTTGATTGCAGCTCTGTCCCGAGATCTCCTGGAGGACTTTATCCCCTTCTTGCCAAGGATTGTCGACTCTCTAGTGTCTCTTTTAGATAGCGGTGCTGATAGGGAGCCTGAGATCGTGGAGCAGATCTTTACATCCTGGTCGTGCATTATGAGGGATTTGCAGAAATATCTTGCGCACAAGCTTGTAGATATGCTAGAGGTGACTGCAAAGTTAAGATATTATCCAAAGAATTATGTCCAAGAATTAATGGCACAGGCGATGGGATTCTTGCTGAGAACGAGAACTGCACCTTTTGAGCAGCTTGACAAAGGTGTCAGAAAGATCATGCTTGATGTTGTGGAGGAATCAACACCTTTCAGAAAATATGGAGTCAGTGCTTTACTATATTATACCATGACGGGAACCTCAACAAGGTTCCATTCTAGAGCCAAGCAAGTGTTACTTTTATTGATGGACAACTCAATACTTGGTTCAGCCACTGTTATTGAAGCCTTAATTTCTGCGTTACAGAGATTGTGTGAGGATTTGGACTCCAAGGAGTTAAACTTGATGTTCGAATGCTTTTATCAGGAAATAAAGGGCTGTGTGACTAATGGAGGTGTACTGCGTTTAAGCCGACTGTTGTCACTGCTTGTGTCTACCGTTCAGGTGAAGAATGGGAAAGCGGTTTCTGATTACAAACAAATGCTTGAAATTGTGGGGGTGCTTGTGCGGACATATATCATACCCTCTGGCATTCAGATGGGAGAGGAACATTTATCTGAAGTCGTTGATAAGATTTTTCAGTTAATGCTCAGCATTCTTAGCGGACTGCACACTTATAATGATTTGTCAACCATCTCTGGCTGTTCGTTGCAATGGGCTCCTGTATTTGATTTACAGAAGTCAAGCTTGTTGGGGTTTATTCAACAATTGCTACAAAAGGATATTTGTATAGTAGATACCTTCCGAGTTAACATTTTAAGAGTCATGAATGTTTTAATAGAAACTTCAGAAGAAGATGTTATATATCTGTTAGTCATCTTCTGTGAAAGGCTGCAAAGGGGAGCGCAAAGCTTTAAGTTACTAGATGGATCTCCTGAACTGTCCAGGATCCAATGTTTTCTGAGTGGCACGGTCAATAAATGGGTTGGGGTTTTAAAGGGTGTTCGGAATGGGGATTTAGCATCTACTTCAATTCATGAAGCTGACTTGGCCCTGCTGTGGGGAATCATTAACTGCTTTCCGCAAATAGTAGACTCCAAAGAAGGTCCATCCTTGTTACTTGATTTGACAGATGCAATCGATCAACTCCTGATGATTGAAGATGGGAATATTGCAGGCTTTCCTAAACACACTTGGCAAAGCCTAATTGGCACTTCCTTAAATTCCTATTACAAATTGACTTGTGGTAAAAATTTGGAGCCAGAAACAAGCAGATTTTTAGCTCTTGGAAAAAGACACAAATCATGTTCACATGTGTTGGTTGCTGTTGCTGATTTTTTGGACTCTTTGTATGGGTCTGCGATGGATGGCGACACCCAGTTTACAATATATCATCCAGAACTTAGTGCATATATGGCTATGGATGCTTTAAAGATGTTTGCTGACAATTTGTGCCACTCAGACAGAGGGATTCGTGCTTCAACTCTTAGAATATTATGCCACTTTGAAACTTTAAGTTGCGATGAGCCAGTTCTGAAAAAGATGAAAACTGAACTTTCTCCTACTTCTCATGTCGATAGCAAAGACTTTAATGTTCTTCAGCTTCTTCTGTCAATCGAGTCAACTCCTCTTTCAATTTGTACCAGCAGAAAAGTTACTCTATTGATTTCTAGAATACAGATGGGCCTCTCTGCTGGAAAAATATCTGAAGCTTATCTTCCCCTTGTTGTAAATAGCATGATTGGTATCTTCCATAACCGGTTTAGTCATCTTTGGAATCCTGTATCAGAGTGCCTTGCAGTTCTGATAAGCCGAAGTAATGGACTTGTATGGGAAAATTTTCTCAACTATTTTGAGCAATGCCAGTCCTTATTTCAAGCATCTATTGATCATGTTGGCCAAGGTGATACTATGCTGTCCAACAAGTCAAGTGATCTGGTTGAACGTTTTAATTTGTTTGCTACCCCAACATCTGATAGTACACCAACGGCAACAGTTTTGTCTTCCTTGCTCCAATCTTTACAAAAACTTCCAATCATTGAATCCAAGTCTCATCAGATTCTGCCTTTATTTCTGAAATTTTTGGGCTATAATTGTGAAAATTTTGTAAGTGTGGGATCTTTCAATTCAAATGTTTGTAAAGGGAAAGAGTGGAAACGTGTCCTTAAAGAATGGTTGAACTTGCTGAAACTGATGTACAACCTTAAGCACTCATATCAGAATCAGTTTCTTAAAGAGGTTTTGCAAAATAGGCTCTTGGATGAAAATGATGCTGAAGTACAGATGAAGGTTCTCGATTGCCTATTAATCTGGAAAGATGATTCCCTGCTCCCATATAGTCAGCAATTGAAAAACTTGGTCAGCTTCCAAAATTTAAGAGAAGAATTAACAAGATGGAGTTTGTCCAGAGAGTCTAATCTAATTGAAGAACAACACAGAGCTTACCTTGTGCCCATTGTTATCCGTCTTCTGATTCCCAGCGTCCGGAAATTGAAGAAACATGCTTCTCAGAAGCACTCAAGAGTAAATCATCGCAAGGCAGTGCTCGGTTTCATAGCTCAACTTGATGTTGAAGAGCTACCTCTTTTCTTTGCATTGTTGATAAAGCCCTTGCAAATTATTTCGATAGGAAGTGAAGGTGCTGCAAACTGGTTTTGGAGCTCATCAAATGGTTCTGTGGAAGAATTTCAAACATTGAATTTCTTGAAGTATTTCACGTTTAGTAATATTACAGCCTTGTCTTGGAAGAAAAGAAGTGCTTTTCTACATGTGATTGAAGATGTTCTTGGAGTTTTTGATGCATCACGTGTTGGTCCCTTCCTTGATTTCATAATGGGATGTGTTGTTCGGATATTAGGAAGCGGTACTTTAGGTCTTGATGTGGCAAAAGGCAAAGGATCTTCTTCCCTTACTAATTATTCTGATGCTAATCTTGCTTCCCTTGGATATGATGGGGCAGTGGATAATAATGTTTTGATATCTACGGCTGTGGGGCAGTTGAAGGATTTGAGATCTTTATCCTTGAAAATTGTGTCCTTTGTTCTGAATAAGTACGAAGATCACGACTTTAGCTGTGAATTCTGGGATCTTTTCTTCGGGTCGGTGAAGCCCTTAATTGATGGTTTCAAGCAGGAGGGATTCAGTGGCCAGAAGCCTAGTTCACTCTTCTCTTGCTTTCTTGCTATGTCTAGAAGTGAAAAATTAGTATCACTGCTGTGTAGGGAGCAAAACCTTGTCCCTGATATACTCTCAATTCTAACCGTCACGTCAGCATCTGAAGCTATTGTGGCTTGTGTTCTGAACTTTGTTGAGAACTTGTTGATTCTTGATGATGAATTGGGTGTTGAAGACAATGCTGGAAAAAGAGTTATACTTCTGTACCTTGAAGCACTAGTTGATAACTTGCATTGTCTCTTCAAAAATAATGTTGCAGCCAAGAGGAAATTGCTTAAACACCCAGGGGAGACAGAAGTGAGGATTTTTCAAATATTACCAAAGTATATAAGTGATGCATTGTCAGCCTGGAAATTCGTGGATATATTGCTCCCTGTTTTAGCAAATGGAGCTCAAGATTCAGAATTTCGATTTGAAGCTGTGCAAGTCATTTGTGATATTGTTCCAGTACTAGGGAGTGACGTTACAAATAATATTTTGAATGCAGTATCTCCATTACTTATTTCTACCGATCTAGATAAGCGTTTAGTTATCTGTAATCTTCTGGACACACTTGCCAGAGCAGACTCTTCCATTCAATTTGTGGCAAAACTTGTCCAGGACTTGAATGCAACCTCTATCACGGAAATAGATAGCGTTGATTATGATAGAGTGCTCAATGCTTATGGAAAGATCACGGTTAATATGTTCAATACCATTCGAGAGGATCATGCATTGGTCATATTGTCTCACTGTGTCTATGACATGTCATCTGACGAATCAACCTTGAGGCACCGAGCTTATGATTCATTGCTTTCATTTGTTGAATTTTCTGCCCTCGTACTTGGCAAAGTATTGAACAATGACTCTGAAATGCCTGACGAGATGTTAGCCTCTGAGGATCATTGCTGGACAAAAGTTTGCATTCAGCGCATAATAAGCAAATTTCTTTTAAAGCATATGGCTAATGCTATGAAGAGTGGGACAGCTGTTAGAGAGGAATGGGTCGAGTTACTTAGAGAAATGGTGTTAAAACTTCCAGAAGTGGCAAACCTTGGTTCACTGAAACCTCTTCAGGATGAAAATCTTGAAATAGATTTTTTCAAGAATATCCTTCATATACAGAAACATAGGAGAGCAAGGGCAATGAAACGCTTTAAGAATTTTGTCACAAACAGCTATATGCCAGAGGGCATCACAAAGAAACTGTTTGTTCCCTTCTTCTTCACGATCTTGATGGAGGAAGAAAAAGGAGAGCATATAAAAAATATGTGCATAGAGGTGATTGCTTCAATTTCAAGCAGGGAGTGGAGTTCATCCTACTTGTTGCTGATGAGATGCTTCAATGAGATTTCCAAAAATCCTCTGAAACAGAAGCTTCTTTTGCGGCTAATTTGCTCTATCTTGCACCAGTTCCACTTTTCAGAGACAATTGATACTGCCTCTGTAAATGAAACACAAACATGCCTTCATAAAACTGTGCTTCCTAAGATACAAAAGTTACTCAGCGATTCTGAAAAGGTCAGTGTTAACATCAGTCTTGCTGCACTGAGAGTATTAAAGTTGCTACCTGGAGATGTAATGGACTCGCAGCTTCCTAGCATTATTCATCGCATTTCAAACTTTTTGAAGAACAGATTAGAAAGCATCCGTGATGAAGCTAGGAGTGCTTTGGCTGATTGTTTGAAGGAGCTTGGGTTGGAATACTTGCATTTTATAGTCAAAGTTTTGCGAAGCACTTTAAAACGTGGATTTGAGTTGCATGTCTTGGGATATACTCTAAACTTTATCTTATCAAAGTTTCTCGTTACTCCTATCAGCGGGAAACTGGACTACTGTTTGGAAGATCTGCTTTCTATTGCACAGAATGATATTCTTGGAGATGTTGCTGAGGAAAAAGAGGTTGAGAAGATTGCTTCCAAAATGAAAGAAACAAAGAAGCAAAAGTCTTTTGAAACTCTAAAATTGATTGCTCAAAGCATAACATTCAAAAGCCATGCCTTGAAGCTTCTATCACCTGTTATAACTCAATTTGAGAAACATCTTACACCAAAAACAAAGTCAAAATTGGAAAGTATGTTGAATCACATAGCAGCTGGTATTGAGTGTAATCCAACTGTTGATCAGACTGACCTTTTTATATTTGTACATGGCCTGATTGAAGATGGAATAAAAGAAGAAAATGGTAAGGGTGAGACTTCGTTCATTACGGGGGGAAATGGACATCGTCGAAGGGATGTGATTGGAAAAGTTGATTCCTCAGGCCGCATTGCAGGTGCTAAATCAGTGTGTTCACATCTTATTTCTGTGTTTGCTCTTGGGATGTTGCAGAAACGCATAAAGAATTTGAAAGTGAGAAAAAATGATGTACAAATATTGTCAATGTTGGATCCTTTTGTCATACTGTTAGGGAAGTGCTTGAATTCCAAGTATGAAGATGTCTTATCTGCAACACTTAGATGCCTAACTTCGTTGGTCAGGTTGCATTTACCTGCCATTGAAGATCAAGCAGATAGTATAAAAGCAGTGCTCTTTGATATTGCTCATAGTTGGTTAAATACTGGCAGTTCTCTAATGGAGTCATGTCTGAGGCTGTTAACTGTACTTTTGCGGGGCAACAAAATTACTCTTTCCTCCGATCATCTACATCTATTGATTCAGCTTCCAGTGTTCGTTGATATTGAAAGGGACCCCTCATTTGTTGCTCTTTCACTTCTGAAGGCAATTGTTAAACGCAAGCTAGTTGTTCCGGAGATATATGATCTTGTTACTAGAGTCTCAGAATTGATGGTAACAAGTCAAGTAGAACCAATTCGTCACAAATGTAGTCAGATTCTGTCTCACTTCTTAAATGATTATCCTCTTTCAGAAAAACGATTGCAACAACATTTGGATTTTTTGCTGTCTAATCTGAGGTATGAGCACTCTAGTGGAAGAAAAACTGTGCTTGAAATGCTCCATGCAGTTATCGTTAAAAATCCACGAAATGTTGTAGATGAGCAATCACAGACGTTTTTTGTCCATTTGGTGGTTTGCTTGGCTAATGATCGGGATAATGAAGTTCGTTTGATGGCTGGTGCGGCTATAAAACGTCTCACTGGTTGTGTAAGCCCACGCTCACTTCTCTCCATTCTTGAGTACAGTCTATCTTGGTATTTGGGTGAGAAGCAGCAACTGTGGGGTGCAGCAGCACAGGTTTTGGGGTTGCTGGTTGAAGTTGAAGTCATGAAGAAACGATTCCACAAGCATATCAACAGTGTATTAAAAGTGACTAAAAGCATCTTGCAGTCTGCCATCGATGCTGTCACTCATGATTCTCCTCATGAAACTGCCATTCCTTTCTGGAAAGAGGCATTTTATTCATTGGTTATGCTGGAAAAAATTCTGAATCAGTTCCATGATTTGTGTTTTGATAGGGATCTTGAGGATATATGGGAAGCAATTTGTGAGTTACTCCTGCATCCACACATGTGGTTACGTTGTATTTCAAGTCGTCTTATAGCCTTCTACTTTGCTTCCGTAAAAGAGTCTTGCTCAGGAGATCATGAAAATCCATTTGGCACTTACTACCTTATAAAACCTAATAAACTTTTCATGATAGCTGCATATATCTGCTGCCAACTGAAGACACAACTCATTGAGGATGCAGCCAACAAACTGATTACACAAAATCTTGCATTCACTGTGTGTGGTGTGCACTCTTTGATGGGACAAACAGAGTGTGCAGATTCTCATCAGTTTTGGTTTAACCTTGAACAGCATGAGCAAGACCGATTTCTTAAAGCTTTTGAGTTGCTCGAAGCTAGAAAAGGAAAGACCACGTTTTTATCTCTTGCCTCTGGCATGTGTGACACAAATGATGAAAATCCCTCTAAGAATATTCGATGCTTGCTTGTCTCTAACTTGCTCAAGAAAATGGGAAAGATTGCCCTTCAAATGGAGGCTGTCCAGATGAAAATTGTCTTTGATTGTTTCGAAAAAATTTTGTCTGAAATGAGTCGGGAGGATTGCCTGCTTTATGCTTATGAAATGTTGCAGCCCTTGTATAAAGTTTGCGAAGGATTTTCTGGGACTGTGATCCCTGAAAATATGAAGCAATTAGCAGAAGAAGTTTCTGGACGTCTACGCAGTAAACTAGGCAGCCAAAATTACGTACAAGTTTACAATGACATCAGGAAACAACTCAAGGCAAAAAGGGATAAGAGGAAACAGGATGAAAAGCGCTTGGCTGTTGTTAATCCTATGCAGAATGCCAAGAGGAAACTGAGGATTGCAGAGAAGCATCGGGCCAACAAGAAAAGGAAGATGATGACAATGAAAATGGGGAGATGGGCACATCATTCCAAGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRIM

Protein Analysis

2667

Amino Acids

301.97

Weight (kDa)

7.58

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UTP20_N PF07539 883 - 1495 6.9e-98 U3 small nucleolar RNA-associated protein 20, N-terminal
UTP20 PF20416 1720 - 1936 1e-65 U3 small nucleolar RNA-associated protein 20 domain
RYDR_ITPR PF01365 2149 - 2226 3.6e-06 RIH domain
UTP20_C PF23099 2558 - 2652 1.7e-11 Small subunit processome component 20 homolog, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1173, 5672, 7223
AarI CACCTGC 1 cut(s) 5912
AasI GACNNNNNNGTC 1 cut(s) 662
AatII GACGTC 1 cut(s) 7771
Acc16I TGCGCA 1 cut(s) 525
Acc36I ACCTGC 2 cut(s) 5912, 6148
AccB1I GGYRCC 1 cut(s) 4440
AccB7I CCANNNNNTGG 1 cut(s) 6676
AccI GTMKAC 4 cut(s) 414, 989, 1587, 7771
AccIII TCCGGA 2 cut(s) 2979, 6397
AclI AACGTT 1 cut(s) 2440
AcoI YGGCCR 3 cut(s) 52, 2392, 3640
AcuI CTGAAG 9 cut(s) 1134, 1326, 2078, 2223, 2790, 3792, 4706, 6386, 7292
AcvI CACGTG 1 cut(s) 3302
AcyI GRCGYC 2 cut(s) 239, 7768
AdeI CACNNNGTG 1 cut(s) 7335
AfeI AGCGCT 1 cut(s) 7871
AflII CTTAAG 1 cut(s) 2699
AflIII ACRYGT 6 cut(s) 1807, 2653, 3262, 3301, 4413, 7116
AgeI ACCGGT 1 cut(s) 2253
AhlI ACTAGT 1 cut(s) 3886
AjiI CACGTC 1 cut(s) 3762
AjnI CCWGG 8 cut(s) 151, 378, 485, 1439, 3952, 4016, 4266, 5218
AjuI GAANNNNNNNTTGG 4 cut(s) 3264, 3296, 7188, 7220
AleI CACNNNNGTG 3 cut(s) 3709, 6576, 7117
AloI GAACNNNNNNTCC 2 cut(s) 3324, 3356
Alw21I GWGCWC 7 cut(s) 3042, 3158, 4063, 4326, 6180, 6573, 7347
Alw44I GTGCAC 1 cut(s) 7343
AlwNI CAGNNNCTG 5 cut(s) 830, 2557, 3770, 6484, 6823
Ama87I CYCGRG 1 cut(s) 369
Aor13HI TCCGGA 2 cut(s) 2979, 6397
Aor51HI AGCGCT 1 cut(s) 7871
AoxI GGCC 9 cut(s) 24, 52, 1545, 2179, 2392, 3640, 5800, 5911, 7935
ApaLI GTGCAC 1 cut(s) 7343
ArsI GACNNNNNNTTYG 8 cut(s) 96, 128, 244, 276, 5693, 5725, 6329, 6361
AseI ATTAAT 2 cut(s) 596, 2801
AsiGI ACCGGT 1 cut(s) 2253
Asp700I GAANNNNTTC 8 cut(s) 2334, 3180, 3206, 3276, 6459, 6884, 7029, 7040
AspLEI GCGC 4 cut(s) 526, 1402, 4581, 7872
AspS9I GGNCC 7 cut(s) 247, 1546, 1601, 2179, 3308, 6337, 7935
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 8 cut(s) 562, 1012, 2411, 3610, 4942, 5655, 5852, 6821
AsuII TTCGAA 3 cut(s) 291, 906, 7623
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 4 cut(s) 247, 1601, 3308, 6337
AxyI CCTNAGG 1 cut(s) 5908
BaeGI GKGCMC 3 cut(s) 2949, 7347, 7984
BaeI ACNNNNGTAYC 4 cut(s) 3857, 3890, 5132, 5165
BalI TGGCCA 2 cut(s) 2394, 3642
BamHI GGATCC 2 cut(s) 1443, 6037
BanI GGYRCC 1 cut(s) 4440
BanII GRGCYC 3 cut(s) 1216, 3158, 4063
BauI CACGAG 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 3302
BbsI GAAGAC 6 cut(s) 61, 106, 2490, 2954, 3849, 7280
Bbv12I GWGCWC 7 cut(s) 3042, 3158, 4063, 4326, 6180, 6573, 7347
BbvCI CCTCAGC 1 cut(s) 5538
BceAI ACGGC 4 cut(s) 11, 226, 2499, 3495
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 8 cut(s) 153, 380, 487, 1441, 3954, 4018, 4268, 5220
BclI TGATCA 2 cut(s) 2383, 5770
BcnI CCSGG 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 3886
BfoI RGCGCY 1 cut(s) 7873
BfrI CTTAAG 1 cut(s) 2699
BfuAI ACCTGC 2 cut(s) 5912, 6148
BglI GCCNNNNNGGC 1 cut(s) 1704
BglII AGATCT 4 cut(s) 373, 474, 3506, 5494
BlpI GCTNAGC 1 cut(s) 1145
BmcAI AGTACT 1 cut(s) 4119
Bme1390I CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
Bme18I GGWCC 4 cut(s) 247, 1601, 3308, 6337
BmeT110I CYCGRG 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 3762
BmgT120I GGNCC 7 cut(s) 247, 1546, 1601, 2179, 3308, 6337, 7935
BmrFI CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
BmrI ACTGGG 1 cut(s) 1867
BmuI ACTGGG 1 cut(s) 1867
BoxI GACNNNNGTC 1 cut(s) 973
BpiI GAAGAC 6 cut(s) 61, 106, 2490, 2954, 3849, 7280
BplI GAGNNNNNCTC 2 cut(s) 7166, 7198
BpmI CTGGAG 2 cut(s) 401, 5241
Bpu10I CCTNAGC 3 cut(s) 21, 5538, 7183
Bpu1102I GCTNAGC 1 cut(s) 1145
Bpu14I TTCGAA 3 cut(s) 291, 906, 7623
BpuEI CTTGAG 8 cut(s) 356, 2998, 4047, 4456, 6803, 7091, 7541, 7817
BpuMI CCSGG 1 cut(s) 170
Bsa29I ATCGAT 3 cut(s) 108, 1635, 6945
BsaAI YACGTR 2 cut(s) 3302, 7801
BsaBI GATNNNNATC 7 cut(s) 2240, 3423, 3511, 4731, 7065, 7380, 7512
BsaHI GRCGYC 2 cut(s) 239, 7768
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 8 cut(s) 151, 404, 885, 2395, 3436, 3952, 3953, 4702
BsaWI WCCGGW 3 cut(s) 2253, 2979, 6397
BsaXI ACNNNNNCTCC 2 cut(s) 5330, 5360
Bse118I RCCGGY 2 cut(s) 50, 2253
Bse21I CCTNAGG 1 cut(s) 5908
Bse3DI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
Bse8I GATNNNNATC 7 cut(s) 2240, 3423, 3511, 4731, 7065, 7380, 7512
BseAI TCCGGA 2 cut(s) 2979, 6397
BseBI CCWGG 8 cut(s) 153, 380, 487, 1441, 3954, 4018, 4268, 5220
BseCI ATCGAT 3 cut(s) 108, 1635, 6945
BseDI CCNNGG 8 cut(s) 151, 404, 885, 2395, 3436, 3952, 3953, 4702
BseJI GATNNNNATC 7 cut(s) 2240, 3423, 3511, 4731, 7065, 7380, 7512
BseMI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
BseRI GAGGAG 2 cut(s) 2112, 6957
BseSI GKGCMC 3 cut(s) 2949, 7347, 7984
BseX3I CGGCCG 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 2972
BsgI GTGCAG 5 cut(s) 621, 1148, 5178, 6852, 7392
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 9 cut(s) 26, 54, 1547, 2181, 2394, 3642, 5802, 5913, 7937
BshNI GGYRCC 1 cut(s) 4440
BshTI ACCGGT 1 cut(s) 2253
BshVI ATCGAT 3 cut(s) 108, 1635, 6945
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 7 cut(s) 3042, 3158, 4063, 4326, 6180, 6573, 7347
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 5 cut(s) 51, 169, 2254, 2980, 6398
BslFI GGGAC 9 cut(s) 19, 185, 352, 3294, 3716, 4645, 6350, 7371, 7732
BsmBI CGTCTC 2 cut(s) 85, 6746
BsmFI GGGAC 9 cut(s) 19, 185, 352, 3294, 3716, 4645, 6350, 7371, 7732
BsmI GAATGC 8 cut(s) 914, 1086, 1149, 4156, 4282, 4572, 7325, 7903
BsnI GGCC 9 cut(s) 26, 54, 1547, 2181, 2394, 3642, 5802, 5913, 7937
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 369
Bsp119I TTCGAA 3 cut(s) 291, 906, 7623
Bsp13I TCCGGA 2 cut(s) 2979, 6397
Bsp1407I TGTACA 3 cut(s) 2691, 5794, 6016
Bsp1720I GCTNAGC 1 cut(s) 1145
BspANI GGCC 9 cut(s) 26, 54, 1547, 2181, 2394, 3642, 5802, 5913, 7937
BspDI ATCGAT 3 cut(s) 108, 1635, 6945
BspEI TCCGGA 2 cut(s) 2979, 6397
BspHI TCATGA 7 cut(s) 1320, 1531, 6873, 6958, 6970, 7192, 7242
BspMI ACCTGC 2 cut(s) 5912, 6148
BspQI GCTCTTC 1 cut(s) 3063
BspT104I TTCGAA 3 cut(s) 291, 906, 7623
BspT107I GGYRCC 1 cut(s) 4440
BspTI CTTAAG 1 cut(s) 2699
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
BsrFI RCCGGY 2 cut(s) 50, 2253
BsrGI TGTACA 3 cut(s) 2691, 5794, 6016
BssAI RCCGGY 2 cut(s) 50, 2253
BssECI CCNNGG 8 cut(s) 151, 404, 885, 2395, 3436, 3952, 3953, 4702
BssNI GRCGYC 2 cut(s) 239, 7768
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 8 cut(s) 153, 380, 487, 1441, 3954, 4018, 4268, 5220
Bst6I CTCTTC 7 cut(s) 16, 3063, 3665, 3914, 4243, 4619, 4725
BstACI GRCGYC 2 cut(s) 239, 7768
BstAFI CTTAAG 1 cut(s) 2699
BstAUI TGTACA 3 cut(s) 2691, 5794, 6016
BstBAI YACGTR 2 cut(s) 3302, 7801
BstBI TTCGAA 3 cut(s) 291, 906, 7623
BstC8I GCNNGC 5 cut(s) 52, 1672, 6386, 7538, 7661
BstENI CCTNNNNNAGG 2 cut(s) 150, 760
BstH2I RGCGCY 1 cut(s) 7873
BstHHI GCGC 4 cut(s) 526, 1402, 4581, 7872
BstMCI CGRYCG 1 cut(s) 55
BstNI CCWGG 8 cut(s) 153, 380, 487, 1441, 3954, 4018, 4268, 5220
BstNSI RCATGY 8 cut(s) 1811, 2999, 3266, 4417, 5115, 5414, 7120, 7495
BstPAI GACNNNNGTC 1 cut(s) 973
BstSCI CCNGG 9 cut(s) 151, 168, 378, 485, 1439, 3952, 4016, 4266, 5218
BstSLI GKGCMC 3 cut(s) 2949, 7347, 7984
BstSNI TACGTA 1 cut(s) 7801
BstV2I GAAGAC 6 cut(s) 61, 106, 2490, 2954, 3849, 7280
BstXI CCANNNNNNTGG 1 cut(s) 7119
BstZI CGGCCG 1 cut(s) 52
Bsu15I ATCGAT 3 cut(s) 108, 1635, 6945
Bsu36I CCTNAGG 1 cut(s) 5908
BsuRI GGCC 9 cut(s) 26, 54, 1547, 2181, 2394, 3642, 5802, 5913, 7937
BsuTUI ATCGAT 3 cut(s) 108, 1635, 6945
BtgZI GCGATG 5 cut(s) 623, 1871, 2031, 3011, 5243
BtrI CACGTC 1 cut(s) 3762
BtsI GCAGTG 5 cut(s) 977, 3042, 3459, 3704, 6180
BveI ACCTGC 2 cut(s) 5912, 6148
Cac8I GCNNGC 5 cut(s) 52, 1672, 6386, 7538, 7661
CaiI CAGNNNCTG 5 cut(s) 830, 2557, 3770, 6484, 6823
CciI TCATGA 7 cut(s) 1320, 1531, 6873, 6958, 6970, 7192, 7242
CfoI GCGC 4 cut(s) 526, 1402, 4581, 7872
Cfr10I RCCGGY 2 cut(s) 50, 2253
Cfr13I GGNCC 7 cut(s) 247, 1546, 1601, 2179, 3308, 6337, 7935
ClaI ATCGAT 3 cut(s) 108, 1635, 6945
CseI GACGC 3 cut(s) 67, 247, 2965
CspAI ACCGGT 1 cut(s) 2253
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
DraI TTTAAA 4 cut(s) 1491, 1926, 4602, 5391
DraIII CACNNNGTG 1 cut(s) 7335
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 3 cut(s) 52, 2392, 3640
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 7 cut(s) 16, 3063, 3665, 3914, 4243, 4619, 4725
EarI CTCTTC 7 cut(s) 16, 3063, 3665, 3914, 4243, 4619, 4725
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 3156, 4061
EclXI CGGCCG 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 7801
Eco130I CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
Eco24I GRGCYC 3 cut(s) 1216, 3158, 4063
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 3474
Eco47I GGWCC 4 cut(s) 247, 1601, 3308, 6337
Eco47III AGCGCT 1 cut(s) 7871
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 2 cut(s) 3156, 4061
Eco57I CTGAAG 9 cut(s) 1134, 1326, 2078, 2223, 2790, 3792, 4706, 6386, 7292
Eco72I CACGTG 1 cut(s) 3302
Eco81I CCTNAGG 1 cut(s) 5908
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 2 cut(s) 3156, 4061
EcoNI CCTNNNNNAGG 2 cut(s) 150, 760
EcoO109I RGGNCCY 1 cut(s) 6337
EcoRI GAATTC 2 cut(s) 3572, 6070
EcoRII CCWGG 8 cut(s) 151, 378, 485, 1439, 3952, 4016, 4266, 5218
EcoRV GATATC 1 cut(s) 3474
EcoT14I CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
EcoT22I ATGCAT 3 cut(s) 3298, 4009, 4384
EcoT38I GRGCYC 3 cut(s) 1216, 3158, 4063
ErhI CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
Esp3I CGTCTC 2 cut(s) 85, 6746
FaqI GGGAC 9 cut(s) 19, 185, 352, 3294, 3716, 4645, 6350, 7371, 7732
FauI CCCGC 2 cut(s) 5462, 6252
FauNDI CATATG 1 cut(s) 4608
FbaI TGATCA 2 cut(s) 2383, 5770
FblI GTMKAC 4 cut(s) 414, 989, 1587, 7771
FriOI GRGCYC 3 cut(s) 1216, 3158, 4063
FspI TGCGCA 1 cut(s) 525
GlaI GCGC 4 cut(s) 525, 1401, 4580, 7871
GsaI CCCAGC 1 cut(s) 2976
GsuI CTGGAG 2 cut(s) 401, 5241
HaeII RGCGCY 1 cut(s) 7873
HaeIII GGCC 9 cut(s) 26, 54, 1547, 2181, 2394, 3642, 5802, 5913, 7937
HapII CCGG 5 cut(s) 51, 169, 2254, 2980, 6398
HgaI GACGC 3 cut(s) 67, 247, 2965
HhaI GCGC 4 cut(s) 526, 1402, 4581, 7872
Hin1I GRCGYC 2 cut(s) 239, 7768
Hin6I GCGC 4 cut(s) 524, 1400, 4579, 7870
HinP1I GCGC 4 cut(s) 524, 1400, 4579, 7870
HincII GTYRAC 6 cut(s) 415, 1185, 1306, 2118, 5179, 6246
HindII GTYRAC 6 cut(s) 415, 1185, 1306, 2118, 5179, 6246
HindIII AAGCTT 7 cut(s) 530, 1240, 1405, 2205, 5024, 5654, 7431
HpaI GTTAAC 3 cut(s) 1306, 5179, 6246
HpaII CCGG 5 cut(s) 51, 169, 2254, 2980, 6398
HphI GGTGA 8 cut(s) 562, 1012, 2411, 3610, 4942, 5655, 5852, 6821
Hpy99I CGWCG 1 cut(s) 5880
Hsp92I GRCGYC 2 cut(s) 239, 7768
HspAI GCGC 4 cut(s) 524, 1400, 4579, 7870
KflI GGGWCCC 1 cut(s) 6337
Kpn2I TCCGGA 2 cut(s) 2979, 6397
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Ksp22I TGATCA 2 cut(s) 2383, 5770
KspAI GTTAAC 3 cut(s) 1306, 5179, 6246
LguI GCTCTTC 1 cut(s) 3063
MfeI CAATTG 4 cut(s) 1262, 2840, 5079, 6372
MlsI TGGCCA 2 cut(s) 2394, 3642
MluNI TGGCCA 2 cut(s) 2394, 3642
MmeI TCCRAC 4 cut(s) 2439, 5328, 5786, 6015
Mox20I TGGCCA 2 cut(s) 2394, 3642
Mph1103I ATGCAT 3 cut(s) 3298, 4009, 4384
MroI TCCGGA 2 cut(s) 2979, 6397
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 8 cut(s) 2334, 3180, 3206, 3276, 6459, 6884, 7029, 7040
MscI TGGCCA 2 cut(s) 2394, 3642
MslI CAYNNNNRTG 7 cut(s) 1091, 3709, 4928, 5110, 6106, 6576, 7117
Msp20I TGGCCA 2 cut(s) 2394, 3642
MspA1I CMGCKG 3 cut(s) 4637, 5469, 5744
MspCI CTTAAG 1 cut(s) 2699
MspI CCGG 5 cut(s) 51, 169, 2254, 2980, 6398
MspR9I CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
MunI CAATTG 4 cut(s) 1262, 2840, 5079, 6372
Mva1269I GAATGC 8 cut(s) 914, 1086, 1149, 4156, 4282, 4572, 7325, 7903
MvaI CCWGG 8 cut(s) 153, 380, 487, 1441, 3954, 4018, 4268, 5220
NaeI GCCGGC 1 cut(s) 52
NciI CCSGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 4608
NgoMIV GCCGGC 1 cut(s) 50
NsbI TGCGCA 1 cut(s) 525
NsiI ATGCAT 3 cut(s) 3298, 4009, 4384
NspI RCATGY 8 cut(s) 1811, 2999, 3266, 4417, 5115, 5414, 7120, 7495
NspV TTCGAA 3 cut(s) 291, 906, 7623
OliI CACNNNNGTG 3 cut(s) 3709, 6576, 7117
PagI TCATGA 7 cut(s) 1320, 1531, 6873, 6958, 6970, 7192, 7242
PaqCI CACCTGC 1 cut(s) 5912
PasI CCCWGGG 1 cut(s) 3953
PciI ACATGT 4 cut(s) 1807, 3262, 4413, 7116
PciSI GCTCTTC 1 cut(s) 3063
PcsI WCGNNNNNNNCGW 1 cut(s) 3555
PctI GAATGC 8 cut(s) 914, 1086, 1149, 4156, 4282, 4572, 7325, 7903
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 8 cut(s) 2334, 3180, 3206, 3276, 6459, 6884, 7029, 7040
PflFI GACNNNGTC 1 cut(s) 5874
PflMI CCANNNNNTGG 1 cut(s) 6676
PfoI TCCNGGA 4 cut(s) 168, 378, 1439, 4266
PinAI ACCGGT 1 cut(s) 2253
PmaCI CACGTG 1 cut(s) 3302
PmlI CACGTG 1 cut(s) 3302
Ppu21I YACGTR 2 cut(s) 3302, 7801
PpuMI RGGWCCY 1 cut(s) 6337
PscI ACATGT 4 cut(s) 1807, 3262, 4413, 7116
PshAI GACNNNNGTC 1 cut(s) 973
PshBI ATTAAT 2 cut(s) 596, 2801
PsiI TTATAA 3 cut(s) 1173, 5672, 7223
Psp124BI GAGCTC 2 cut(s) 3158, 4063
Psp1406I AACGTT 1 cut(s) 2440
Psp5II RGGWCCY 1 cut(s) 6337
Psp6I CCWGG 8 cut(s) 151, 378, 485, 1439, 3952, 4016, 4266, 5218
PspCI CACGTG 1 cut(s) 3302
PspFI CCCAGC 1 cut(s) 2972
PspGI CCWGG 8 cut(s) 151, 378, 485, 1439, 3952, 4016, 4266, 5218
PspPI GGNCC 7 cut(s) 247, 1546, 1601, 2179, 3308, 6337, 7935
PspPPI RGGWCCY 1 cut(s) 6337
PstNI CAGNNNCTG 5 cut(s) 830, 2557, 3770, 6484, 6823
PsyI GACNNNGTC 1 cut(s) 5874
PvuII CAGCTG 2 cut(s) 4637, 5744
RseI CAYNNNNRTG 7 cut(s) 1091, 3709, 4928, 5110, 6106, 6576, 7117
SacI GAGCTC 2 cut(s) 3158, 4063
SalI GTCGAC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 3063
Sau96I GGNCC 7 cut(s) 247, 1546, 1601, 2179, 3308, 6337, 7935
ScaI AGTACT 1 cut(s) 4119
ScrFI CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
SfuI TTCGAA 3 cut(s) 291, 906, 7623
SinI GGWCC 4 cut(s) 247, 1601, 3308, 6337
SmiMI CAYNNNNRTG 7 cut(s) 1091, 3709, 4928, 5110, 6106, 6576, 7117
SmlI CTYRAG 9 cut(s) 335, 2699, 3013, 4062, 4435, 6782, 7070, 7556, 7832
SmoI CTYRAG 9 cut(s) 335, 2699, 3013, 4062, 4435, 6782, 7070, 7556, 7832
SnaBI TACGTA 1 cut(s) 7801
SpeI ACTAGT 1 cut(s) 3886
SspI AATATT 7 cut(s) 1666, 1989, 3223, 3984, 4144, 6024, 7528
SstI GAGCTC 2 cut(s) 3158, 4063
StyD4I CCNGG 9 cut(s) 151, 168, 378, 485, 1439, 3952, 4016, 4266, 5218
StyI CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
TaqII GACCGA 1 cut(s) 7434
TatI WGTACW 9 cut(s) 952, 2474, 2691, 2773, 4117, 5794, 6016, 6250, 6786
TauI GCSGC 6 cut(s) 57, 60, 63, 5038, 5916, 6731
TspGWI ACGGA 4 cut(s) 2948, 4307, 5288, 7156
Tth111I GACNNNGTC 1 cut(s) 5874
Van91I CCANNNNNTGG 1 cut(s) 6676
Vha464I CTTAAG 1 cut(s) 2699
VneI GTGCAC 1 cut(s) 7343
VpaK11BI GGWCC 4 cut(s) 247, 1601, 3308, 6337
VspI ATTAAT 2 cut(s) 596, 2801
XagI CCTNNNNNAGG 2 cut(s) 150, 760
XbaI TCTAGA 5 cut(s) 305, 773, 2165, 3683, 4183
XceI RCATGY 8 cut(s) 1811, 2999, 3266, 4417, 5115, 5414, 7120, 7495
XcmI CCANNNNNNNNNTGG 1 cut(s) 4249
XmiI GTMKAC 4 cut(s) 414, 989, 1587, 7771
XmnI GAANNNNTTC 8 cut(s) 2334, 3180, 3206, 3276, 6459, 6884, 7029, 7040
ZraI GACGTC 1 cut(s) 7769
ZrmI AGTACT 1 cut(s) 4119
Zsp2I ATGCAT 3 cut(s) 3298, 4009, 4384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.