MD17G1201300.v1.1

Small subunit processome component 20 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005459
Physical Location & Seq
Reverse (-)
24310254 .. 24327809
17556 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1201300.v1.1.491

Sequence Viewer

Length: 8172 bp
ATGGCCACTCTCTCCCAAGCTCAGGCCGTCAAGTCCCTCAACAAATCCCCCGGACGCCGCCGTTTCGTATTCAAGAATTTCTCTGAGAGACTTGATGATGTCGAAATCGATGTTTTCCGAAGCCTCGATAAAATTAAGTCGGAGCCGCATGAGGGCTCTACTTTTTTCCGAGACTGCCTCGTCGAATGGAGGGAACTGAACACGGCTGAGGATTTCATCTCTTTCTATGAGCAAATGACGCCGTTGGTCCAAACGTTGCCTTTGATTCTGTTGCACAAGGAAACCATAATCTCAGAACTCGTTTCGAGATTACAGATGGATGCAAGGCTGTCGCTTGAGCCCATTCTCACGTTAATCGCCGCTCTGTCGAGAGATATCCTGGAGGACTTTATCCCTTTCTTGCCGAGGATTGCTGATTCTCTAGTGTCTCTTCTAGAAAGTGGTGCAGATAGGGAGCCAGAGATCATTGAGCAGATCTTTACATCTTGGTCATCTATTATGATGTACTTGCAAAAATATCTTGTACAAAAGATTAAGCATATACTAAAGGTTACTGTAAAATTGAGGTACTATCCAAAATATCACATCCAAAAATTTATGGCAGAAGCGGTCTCATTCTTGCTGAGAAATGCACCTTTTGAACAACTTAAAGAAGGTGTCAGAAAGATCATGTTTGAAGTTGTGAAGAAATCAACTGATACCAGAAAAGAGGGAGTCAGTAAATTACTGTATTTTGTCATGAGAGGAACCTCATCAAGGTTCCATTCTAGAGCTGAGAGAATGTTGCATTTCCTGATGGACGACTTGATACTTTGCATTGGTGAACAATTCAACGAAGGTTCAGAGACTGTTCTTGAAGTCTTAAAGTCTGCGTTAGAAAGTTTATGTGTGGATTTGGACTCCAAGGAATTGAACTTAATGTTCAATTGCTTATATCGGGAAATAACTGACTGTGTGATTAATGGAGGTGTTGAACGCTTAAGCCGCCTGTTGTCGTTGCTTGTTTCTACTGTGCAAGTTAAGAATGGCCAAAGGGTTTCTGATTACCAACATATGATTGAAATTGTGGGGTTGGTCATGCCTAAGGGCATTACAATGGCAGAGGAGTCTTCATCTGATGTTGTTGATAAGCTTTTAGAGTTAATGCTCTGTATTCTTAGGGGACTACACAATTTAAGTGATATGTCAACCATCTCTAGCTGTTCATTGCAGTGGGCTCCTGTATTTGATCTAAAGAACCCAAGCTTGTTGGGTTTTGTTCGAGAATTATTAAAAGAGGATGTTTGCATAGTAAATATCTTCAGAGCTTACATTTTAAGGGCGATGAATGATTTAATAGAAACTTCCCAGGAAGATGTTATTTATTTGTTACTCACCTTCTGTGAAAAACAGCAAACGGAAATCCAAAGCTTGACCTTCTTAGATGAAACACCTGAAAGAGTTTCAAGGATTCAAGATTTTCTGCGTGGGACTATCAACAACTGGGTTGGGGTTTTAAAGGGTATTGGAAATGGGGACTCATCATCCACAATAATTCTTGAAGTTGACTTGGCTCTGCTGTGGGGAACCATCAACTGCTTTCCCCAAGTAGTAGAATCTGAAAATGATTTATCCTTGTTAAAGGATTTAATAGATGCATATGATCAAATTCTGATGATTGAAGCTGACAATGTTGCAGGTTTTCCTAAGCACACTTGGGAGAGCCTAATTGGTGCTACCCTGAATTCCTATTATAAAATGATACGTGGTAAAAAATCTGAGCTTGACGAAACAAGCAGATTTTTGCATCTTGGAAAAAGACACAAATCATGTGCGCAAGTGTTGGTTGCTGTTGCTGATTTTTTGGATTCAGTGTACGGGTCTATGATGGAAGGAGACACCGAGTCTAGAACATATCATCCAGAATTAAAAGCAGATATGGCTGTAGAGGCTTTAGACATATTTGCTGATAATTTATGCCAGTCAGACAGAGAGATTCGCGCTTCAACTCTTCGAATATTGTGCCACTTTGAAACTCTAAATTGCAATACTTTCACAGAGGATTACCCAGTTGCAAAGAAAATGAGAACCGAAGTTTTTCCAACTTGTCATGTGGATAAACAAGGCTTAAATGTTCTTGCGCTCCTTCTCTCCATTGAGTCAACTCCTCTTTCAATTTCTACCAGCAGGAAAGTTACTCTTTTGATTTCTAGAATACAGATGGCCCTCTCTGCTGGTAGAATAGCTGAAGCTTATCTGCCCCTTGTTTTGAATGGGATGATTGGTATCTTCCATAACCGGTTTAGTTACCTTTGGAATCCTGCATCAGAGTGCCTTGCAGTTCTGATTAGCCAAAACATTGGACTTGTGTGGGAAAATTTTGTTAGTTATTTTGAACAATGCCAATCGAGATTTCAAGCATCCTTTGATCAAATTGACAAAGTAAATTCTAAGACGACCAACAAGTCAATTGGCCTGCTCGGACACTTTGATTCATGTGTTAAGTCCACGTCTACTAGTACACCTTCTGCGGCCGTGTTATCTTCATTGCTCCAGTCTTTACAAAGAATTCCGACCCTAATTGAATCTAAGTCTCGCCAGATTTTACCTTTGTTTTTGAAGTTTATGGGCTACAGTTGCGAAGACTTTAGAAGCTGCAACATCGGGTCTTTCAATCCAAGTGTTTGTAGAGGCAAAGAGTGGAAAGGTGTCCTTAAAGAATGGTTAAACCTGCTGAAACTGATGCACAACCTTAAGTCCTTCTATCAAAATCAGTTCCTTAAAGAGGTTTTACAAATTAGACTTTTAGATGAAAATGATGATGAAATACAAACAAAGGTTCTTGATTGTCTGTTCATATGGAAAGATGATTTCCTGCTTCCATACTGTCAACAATTGAAAAACCTAGCCAGCTTTCATAATTTGAGAGAGGAATTAACAACGTGGAGTTTATCCAGAGAGTCTAATCTAATTGAGGAACATCACAGAGCTTACCTTGTGCCTATAGTTATCCGTCTTCTGATGCCCAAAGTCCGCAAGTTGAAGAAACATGCTAATCAGAAGCATTCTGGAGTAAATCATCGGAAGTCAGTTCTTGGTTTCATATCTCAAGTTGATGTTGAAGAACTTCCTCTTTTCTTTGTATTGTTGGTAAAGCCTTTGCAAATTGTTCCAATGGGAAGTGATGGTGCTGCAAACTGGTTTTGGACTTTGCCAAATGTTTCTCTGGCCGAATTTCAAGCATCGCATTTCCTAAAATATTTCACTGTTAGCAGTATATCAGCCCTGTCTTGGAAGAAAAGATCTGGTTTTCTGCATGTGATCGAAGATATCCTTGGAGTTTTTGATATATTGCGTGTTGGTCCCTTTCTTGATTTTCTTATGGGATGCGTCGCCCGGTTATTAGAAAGCTGCAGTTTAAGTATTGAGGTGGCAAAGACCAAAGAGGCGGGGAAGGCCAAGGGATCTTCATTGGAAAATAATCTGGATGTGAACCGTACTTTGCTTGGAAAAGATAGTGCAGTGGAGACTAATGTTTCGATCTCCCCAGCTTTGGGGCAGCTTAGGGATCTCAGGTCTTTATGCCTTAAAATTGTCTCCTTCGTTCTCAACAAGTATGAAGATCATGATTTTAGTAGTGAGTTCTGGGACCTATTCTTTGTGTCAGTCAAGCCTTTAATTGATCGTTTCAAGCAGGAAGGATCTAGCGGCCAGAAACCTAGTTCGCTCTTCTCTTGTTTTCTTGCGCTGTCTAGAAGCCAAAAACTTGTACCACTACTTTGCAGGGAACAAAAACTTGTTCCTGATATACTCTCAATTCTAACGGTCACATCAACATCCGAAGCTATTGTATCTTGTGTTCTCAAGTTTGTTGATAACCTGTTGACTCTTGATCACGAGTGGGGTGATGAAGATAGTGCTGTGAAAAGAGTTATACTCCCAAACCTTGAAGCACTCATCGATAGCCTGCATTGTCTTTTTCAGAGTAATAATGCTGCCAAGAGGAAATTATATAAACACCCAGGAGAGACAGAGAAAAGAATTTTTCAGTTCTTACCTAAGTATATAGAACATGCTTTGCCAGCCAGGAAATTTTTGGATATCTTGCTTCCAGTTTTAGCGAATGGAGCTCAGAATTCAGATTTCTGTTTTGAAGCAGTGCAAGTAATTCGTGATATGGTTCCAATACTGGGGAATGAGATTACAAATAAAATTCTTAATGCAGTATCTCCACTACTTACTTCTACTGATCTAGATAAACGTGTTTTTATTTGTGATCTTCTTGAGGCTGTTGCTAGAGCAGACCCTTCTGTTCAATTTGTGGCAAAACTGTTACAGGACTTGAATGCAACATCTGTTACTGAACTGGGTAGCCTTGATTATGACAAAGTTGTCAATGCTTATGAAAAGATCAGTGTTGATATCTTCTATACAGTCCGAGAGGATCATGCATTAGTCATTTTGTCTCATTGTGTCTATGACATGTCATCTGAAGAATTAATCTTGAGGCACAGTGCATACAATTCATTGCGCTCATTTGTTGAATTTGCTGCCCTAATTCTTGGCCAAGTAGACCACTGTGAAATGCCTGACAAGATGTCGGCATCTGATGATCATTGTTGGACCAGAGCGTGCATTCAGAGAATAACAAACAAGTTTCTTTTGAAGCATATGGGCAATGCTTTGAAGAGAGGAACTTCTGTCAGAAAGGAATGGGTTGATTTACTAAGACAAATGGTGAAAAATCTACCAGAAGTGGCAAATCTGGGTTCATTGAAGGATCTTTGTGATGATGATGCTGAAATAGATTTTTTCAACAATATCGTTCACCTACAGAAACATAGGAGAGCAAGGGCATTGACACGCTTTAGGAATGTTATCAGTGCCAGCTATATGCCAGAGGGCATCACAAAGAAAGTGTTTGTACCCCTCTTTTTCAATATGTTGTTGGAGGAGCATGAAGGAAAAGGGGAACATGTCAAAAATATGTGCATAGAGGCCCTTGCTTCGATTTCGAGTCACATGGAATGGAATTCATACTACTCGTTGTTGATGAGATGCTTTAATGAGATGAACAAGAATCCTAATAAACAAAAGCTCCTTCTGCGGCTAATCTGTTCCATCTTGGACAAGTTTCACTTTTCAGATGCCAAAGACTCCTTGGACAATGATTCCAACACAGGGACCACTGATACTGGCTCTACAATCTTGCGTAAGTGTAGCAATTCTGTTTCGATAAATGAAATACAGACTTGCCTTCAAAAAGTCGTGCTGCCTAAGATACAAAAGTTACTGAGTGATTCTGAAAAGGTCAATGCTAACATCAGTCTTGCTGCACTAAGAGTATTAAGGTTGCTTCCTGGAGATGTAATGGACTCACAGCTGCCTAGCATTGTTCATCGAGTTTCAAATTTTTTGAAGAATCGATTGGAAAGCATCCGTGATGAAGCTAGGTCCGCTTTGGCTGCTTGTTTGAAGGAGTTGGGGCTGGAATACTTGCATTTTATAGTCAAGGTTTTGCGAGCTACCTTGAAACGGGGATATGAGTTACATGTGCTCGGTTACACACTAAACTTTATTTTGTCAAAGTTTCTTGTTACTCCAATTAGTGGAAAATTGGACTATTGTTTGGAAGATCTCCTTTATATTGTACAGAATGATGTTCTTGGAGATGTTGCTGAGGAAAAAGATGTTGAAAAGATTGCTTCCAAGATGAAAGAAACTAAGAAACAGAAGTCTTTTGAAACCCTGAAATTGATTTCTCAAAGCATAACATTCAAAAGCCACGCGTTGAAGCTTCTGTCACCTGTTACAGCTCAATTCGAGAAACATTTGACACCAAAAACCAAGACAAAATTGGAAAGTATGTTAACTCACATAGGTGCTGGTATTGAATGCAATCCAACTGTTGACCAGACAGACCTATTTATATTCATACATGGCCTGATTGAAGATGGAATAAAAGAAGAAAATGGTCAGAGTGAGAATTTGTTTATTACATGGGTAAATGGACGTCGGCGAAATGTTATGACTGGAAAAGATATTTCCTCGGGGGGTGTCTCAGGTGGTAAATCAGTATGTTCTCATCTTATTTCAGTTTTTGCTCTTGGGATATTGCTGAAACGCATAAAGAATGTGAAATTGGGAAAAGCTGATGTACAAATGTTGTCGATGTTGGATCCTTTTGTCTTACTGTTAGGGAAGTGCTTGAAATCCAAGTATGAAGATGTCGTATCTGCATCACTTAGATGCCTCACTCGACTGGTCAGGTTGCCTTTACCTGCCATCGAATCTCAGGCAGATAGTATTAAAGCCGCGCTGTTTGGTATTGCTGGAAGTACGGGTAATACTGGAAGTTCTCAAATGGAGTCATGCCTGAGGTTGTTAACAGAACTTCTGCGCGGCACCAAAATCACTCTTTCCTCCGACCAGCTACATCTGCTAATTCAGCTTCCATTGTTTGTTGATCTCGAGAGGAATCCCTCCTTTGTTGCTCTTTCACTTCTAAAGGCAATTGTTAACCGCAGGCTAGTTGTTCCTGAGATATATGATCTTGTAACAAGAGTTGCAAATTTGATGGTAACAAGTCAAGTAGAACCAATTCGTCACAAGTGTAGCAAGATTTTATTGCAATTCTTACTTGAATATCGTCTCTCCACAAAACGTTTGCAACAACATTTGGATTTTCTGCTGTCAAATCTGAGGTATGAGCATTCAAGTGGAAGGAAAACTGTGCTTGAGATGCTCCACACAATTATTGTTAAATTTCCACAAAACGTTGTAGATGAGCAGTCACAGACCTTTTTTGTCCATTTGGTGATTTGCTTGGCTAATGATCAAGATAATGAAGTTCGTTCCTTGGCTGGAGTTGCTATAAAATGTCTCATTGGCTATATAAGCTCACATTCATTTCGTTCCATTCTTGAGTACAGCCTATCTTGGTATTTGGGTGGGAAGCAGCAACTATGGAGCGCTGCAGCACAGGTTTTGGGACTTCTGGTTGAAGTCATGGATAAAGAATTTCAGAAGCATGTCAATAAATTATTGCCAGTTGAAGACGTGGAGAAAGAATTTCTTAAGCATATCAACAGAATATTGCCAGCGACTAAGAGTATCTTACTGTCTGCCATTGATACAGTCACTGATGAGCAACTAGACTTTTCTAATGAAACTAGCATTCCTTTGTGGAAGGAGGCATATTATTCGTTAGTTATGCTGGAGAAAATGCTGCATCAGTTTCATAGTTTATGCTTTGATAGGGATCTTGAGGATATATGGGCAGCAATTTGTGAATTACTTCTGCATCCACACATGTGGTTACGCTGCATTTCCAGTCGCCTTGTAGCTTTGTACTTTGATGCTGCCAAAGCCGCCTCTAAAGACGATGGAAAACCATTTGGAATTTACTATCTTATTAGACCAAGTAGACTTTTCATGATAGCTGCATCTCTCTGCTGCCAAATGAAGACACAGCTCAATGATGATGCTGCCAGCAATCTGATTACTGAAAATCTTGCGTTCAGTGTTTGTCATGTGCATTCATTGATTGGACAAACAGAGTGTGCTGATCCACATCAATTCTGGTCCAACCTTGAACAGCATGAGCAAGCCCATTTTCTTCGAGCTTTTGAGTTGCTCGATGCTAGAAAAGGAAGGAGCATGTTTTTATCCCTTACCTCTGGTATATGCGACCCAAATGATGAAAGCGCCTCTAAGAATATCCGATACTTGCTCGTCTCTAACCTGCTCAAAAAAATGGGCAAGACTGCCCTTCAAATGGAGGCAATTCAGATGAAAATTGTCTTTGATAGTTTTCAAAAAGTTTCTTCCTATTTAAGTGAGGAAGACTGCCGGCTTTATGCCTATGAAATCCTGCTGCCGTTGTATAAAGTTGGCGAAGGATTTTCTGGGAGAGTGATTCATGAAAATACGAAGCAGTTAGCACAAGAAGTTACAGACAGCATACGAAAGAAACTAGGCACCCAAAAGTTTGTACTAGTTTACGGTGACATCAGGAAGAATCTCAAGGCGAAAAGGGATAAGAGGAAAAACGAAGAAAAGCGCATGGCTGTCGTTGATCCCATGCGGAATGCTAAGAGGAAACTGAGGATAGCAGAGAAGCATCGTGCCAACAAGAAAAGGAAAATAATGTCGATGAAAATGGGGAGGTGGACACATTCGAAGCCGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRIM

Protein Analysis

2724

Amino Acids

309.29

Weight (kDa)

7.87

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UTP20_N PF07539 895 - 1511 5.2e-97 U3 small nucleolar RNA-associated protein 20, N-terminal
UTP20 PF20416 1761 - 1976 2.8e-64 U3 small nucleolar RNA-associated protein 20 domain
UTP20_C PF23099 2635 - 2709 1.9e-10 Small subunit processome component 20 homolog, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1734
AasI GACNNNNNNGTC 3 cut(s) 179, 2443, 4370
AatII GACGTC 1 cut(s) 5995
Acc16I TGCGCA 1 cut(s) 1815
Acc36I ACCTGC 4 cut(s) 1667, 2718, 6268, 7731
AccB1I GGYRCC 2 cut(s) 6383, 7958
AccB7I CCANNNNNTGG 1 cut(s) 5588
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 3 cut(s) 2492, 4551, 7405
AccII CGCG 4 cut(s) 1980, 5768, 6296, 6381
AclI AACGTT 3 cut(s) 254, 6643, 6756
AcoI YGGCCR 6 cut(s) 3, 1027, 2511, 3207, 3688, 4543
AcuI CTGAAG 3 cut(s) 1285, 2247, 4491
AcyI GRCGYC 3 cut(s) 55, 239, 5992
AfeI AGCGCT 1 cut(s) 6952
AflII CTTAAG 3 cut(s) 979, 2732, 7055
AflIII ACRYGT 6 cut(s) 4240, 4461, 4954, 5530, 5766, 7290
AgeI ACCGGT 1 cut(s) 2277
AhdI GACNNNNNGTC 2 cut(s) 1882, 4576
AhlI ACTAGT 2 cut(s) 2495, 7975
AjiI CACGTC 2 cut(s) 2490, 7039
AjnI CCWGG 5 cut(s) 378, 1347, 4000, 4064, 5338
AjuI GAANNNNNNNTTGG 8 cut(s) 2376, 2408, 3297, 3329, 5390, 5422, 6104, 6136
AleI CACNNNNGTG 2 cut(s) 5859, 7291
AloI GAACNNNNNNTCC 2 cut(s) 1882, 1914
Alw21I GWGCWC 2 cut(s) 4111, 5538
AlwNI CAGNNNCTG 2 cut(s) 848, 7121
Ama87I CYCGRG 2 cut(s) 6028, 6449
Aor51HI AGCGCT 1 cut(s) 6952
ArsI GACNNNNNNTTYG 4 cut(s) 3499, 3531, 3620, 3652
AseI ATTAAT 2 cut(s) 960, 4478
AsiGI ACCGGT 1 cut(s) 2277
Asp700I GAANNNNTTC 4 cut(s) 2076, 3105, 6579, 7275
AspS9I GGNCC 9 cut(s) 247, 2203, 3341, 3628, 4602, 4978, 5163, 5433, 7563
AsuC2I CCSGG 2 cut(s) 51, 3376
AsuHPI GGTGA 8 cut(s) 833, 1366, 3896, 4729, 4799, 5775, 6808, 7997
AsuII TTCGAA 2 cut(s) 1993, 8159
AvaI CYCGRG 2 cut(s) 6028, 6449
AvaII GGWCC 7 cut(s) 247, 3341, 3628, 4602, 5163, 5433, 7563
AxyI CCTNAGG 2 cut(s) 1083, 6356
BaeI ACNNNNGTAYC 2 cut(s) 5252, 5285
BalI TGGCCA 3 cut(s) 5, 1029, 4545
BamHI GGATCC 1 cut(s) 6157
BanI GGYRCC 2 cut(s) 6383, 7958
BanII GRGCYC 4 cut(s) 158, 342, 1219, 4111
BauI CACGAG 1 cut(s) 3875
BbsI GAAGAC 6 cut(s) 1101, 2628, 2987, 7041, 7451, 7830
Bbv12I GWGCWC 2 cut(s) 4111, 5538
BbvCI CCTCAGC 2 cut(s) 207, 5658
BceAI ACGGC 6 cut(s) 11, 45, 219, 226, 2498, 7843
BciT130I CCWGG 5 cut(s) 380, 1349, 4002, 4066, 5340
BclI TGATCA 5 cut(s) 1642, 2407, 3871, 4591, 6814
BcnI CCSGG 2 cut(s) 51, 3376
BcuI ACTAGT 2 cut(s) 2495, 7975
BfmI CTRYAG 6 cut(s) 1923, 2611, 2982, 3391, 4811, 6954
BfoI RGCGCY 2 cut(s) 6954, 7689
BfrI CTTAAG 3 cut(s) 979, 2732, 7055
BfuAI ACCTGC 4 cut(s) 1667, 2718, 6268, 7731
BglII AGATCT 3 cut(s) 474, 3281, 5614
Bme1390I CCNGG 7 cut(s) 51, 380, 1349, 3376, 4002, 4066, 5340
Bme18I GGWCC 7 cut(s) 247, 3341, 3628, 4602, 5163, 5433, 7563
BmeRI GACNNNNNGTC 2 cut(s) 1882, 4576
BmeT110I CYCGRG 2 cut(s) 6028, 6449
BmgBI CACGTC 2 cut(s) 2490, 7039
BmgT120I GGNCC 9 cut(s) 247, 2203, 3341, 3628, 4602, 4978, 5163, 5433, 7563
BmrFI CCNGG 7 cut(s) 51, 380, 1349, 3376, 4002, 4066, 5340
BmrI ACTGGG 4 cut(s) 1492, 2042, 4178, 4355
BmuI ACTGGG 4 cut(s) 1492, 2042, 4178, 4355
BpiI GAAGAC 6 cut(s) 1101, 2628, 2987, 7041, 7451, 7830
BplI GAGNNNNNCTC 4 cut(s) 162, 194, 3900, 3932
BpmI CTGGAG 6 cut(s) 401, 2516, 3069, 5361, 6864, 7217
Bpu10I CCTNAGC 5 cut(s) 21, 207, 1686, 3542, 5658
Bpu14I TTCGAA 2 cut(s) 1993, 8159
BpuEI CTTGAG 9 cut(s) 356, 3072, 3827, 4283, 4504, 6737, 6923, 7265, 7988
BpuMI CCSGG 2 cut(s) 51, 3376
Bsa29I ATCGAT 3 cut(s) 108, 3939, 5404
BsaAI YACGTR 1 cut(s) 1745
BsaBI GATNNNNATC 3 cut(s) 2264, 7239, 7551
BsaHI GRCGYC 3 cut(s) 55, 239, 5992
BsaI GGTCTC 1 cut(s) 616
BsaWI WCCGGW 1 cut(s) 2277
BsaXI ACNNNNNCTCC 2 cut(s) 5061, 5091
Bse118I RCCGGY 2 cut(s) 2277, 7830
Bse21I CCTNAGG 2 cut(s) 1083, 6356
Bse3DI GCAATG 4 cut(s) 1205, 2525, 4505, 4663
Bse8I GATNNNNATC 3 cut(s) 2264, 7239, 7551
BseBI CCWGG 5 cut(s) 380, 1349, 4002, 4066, 5340
BseCI ATCGAT 3 cut(s) 108, 3939, 5404
BseJI GATNNNNATC 3 cut(s) 2264, 7239, 7551
BseMI GCAATG 4 cut(s) 1205, 2525, 4505, 4663
BseRI GAGGAG 3 cut(s) 1118, 2136, 4946
BseX3I CGGCCG 1 cut(s) 2511
BseYI CCCAGC 1 cut(s) 3526
BsgI GTGCAG 3 cut(s) 465, 3519, 5298
Bsh1236I CGCG 4 cut(s) 1980, 5768, 6296, 6381
Bsh1285I CGRYCG 1 cut(s) 2514
BshNI GGYRCC 2 cut(s) 6383, 7958
BshTI ACCGGT 1 cut(s) 2277
BshVI ATCGAT 3 cut(s) 108, 3939, 5404
BsiEI CGRYCG 1 cut(s) 2514
BsiHKAI GWGCWC 2 cut(s) 4111, 5538
BsiHKCI CYCGRG 2 cut(s) 6028, 6449
BsiSI CCGG 4 cut(s) 51, 2278, 3376, 7831
BslFI GGGAC 8 cut(s) 19, 1176, 1483, 1529, 3327, 3641, 5176, 6984
BsmBI CGTCTC 2 cut(s) 6635, 7720
BsmFI GGGAC 8 cut(s) 19, 1176, 1483, 1529, 3327, 3641, 5176, 6984
BsmI GAATGC 8 cut(s) 3043, 4330, 4614, 5879, 6691, 7155, 7516, 8074
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 2 cut(s) 6028, 6449
Bsp119I TTCGAA 2 cut(s) 1993, 8159
Bsp1286I GDGCHC 5 cut(s) 158, 342, 1219, 4111, 5538
Bsp1407I TGTACA 3 cut(s) 523, 5629, 6136
BspDI ATCGAT 3 cut(s) 108, 3939, 5404
BspFNI CGCG 4 cut(s) 1980, 5768, 6296, 6381
BspHI TCATGA 4 cut(s) 738, 3604, 7413, 7900
BspMAI CTGCAG 2 cut(s) 3395, 6958
BspMI ACCTGC 4 cut(s) 1667, 2718, 6268, 7731
BspQI GCTCTTC 1 cut(s) 3713
BspT104I TTCGAA 2 cut(s) 1993, 8159
BspT107I GGYRCC 2 cut(s) 6383, 7958
BspTI CTTAAG 3 cut(s) 979, 2732, 7055
BspTNI GGTCTC 1 cut(s) 616
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 4 cut(s) 1205, 2525, 4505, 4663
BsrFI RCCGGY 2 cut(s) 2277, 7830
BsrGI TGTACA 3 cut(s) 523, 5629, 6136
BssAI RCCGGY 2 cut(s) 2277, 7830
BssNI GRCGYC 3 cut(s) 55, 239, 5992
BssSI CACGAG 1 cut(s) 3875
BssT1I CCWWGG 5 cut(s) 903, 3313, 3438, 5139, 6837
Bst2BI CACGAG 1 cut(s) 3875
Bst2UI CCWGG 5 cut(s) 380, 1349, 4002, 4066, 5340
Bst6I CTCTTC 4 cut(s) 435, 1995, 3713, 4661
BstACI GRCGYC 3 cut(s) 55, 239, 5992
BstAFI CTTAAG 3 cut(s) 979, 2732, 7055
BstAUI TGTACA 3 cut(s) 523, 5629, 6136
BstBAI YACGTR 1 cut(s) 1745
BstBI TTCGAA 2 cut(s) 1993, 8159
BstENI CCTNNNNNAGG 2 cut(s) 754, 2762
BstFNI CGCG 4 cut(s) 1980, 5768, 6296, 6381
BstH2I RGCGCY 2 cut(s) 6954, 7689
BstMCI CGRYCG 1 cut(s) 2514
BstNI CCWGG 5 cut(s) 380, 1349, 4002, 4066, 5340
BstNSI RCATGY 9 cut(s) 3032, 3299, 4055, 4465, 4958, 5534, 7013, 7294, 7642
BstSCI CCNGG 7 cut(s) 49, 378, 1347, 3374, 4000, 4064, 5338
BstSFI CTRYAG 6 cut(s) 1923, 2611, 2982, 3391, 4811, 6954
BstUI CGCG 4 cut(s) 1980, 5768, 6296, 6381
BstV2I GAAGAC 6 cut(s) 1101, 2628, 2987, 7041, 7451, 7830
BstX2I RGATCY 9 cut(s) 474, 3281, 3443, 3547, 3680, 4759, 5614, 6157, 7240
BstXI CCANNNNNNTGG 2 cut(s) 2339, 7293
BstYI RGATCY 9 cut(s) 474, 3281, 3443, 3547, 3680, 4759, 5614, 6157, 7240
BstZI CGGCCG 1 cut(s) 2511
Bsu15I ATCGAT 3 cut(s) 108, 3939, 5404
Bsu36I CCTNAGG 2 cut(s) 1083, 6356
BsuTUI ATCGAT 3 cut(s) 108, 3939, 5404
BtgZI GCGATG 2 cut(s) 1337, 3207
BtrI CACGTC 2 cut(s) 2490, 7039
BtsI GCAGTG 3 cut(s) 1217, 3507, 4143
BveI ACCTGC 4 cut(s) 1667, 2718, 6268, 7731
CaiI CAGNNNCTG 2 cut(s) 848, 7121
CciI TCATGA 4 cut(s) 738, 3604, 7413, 7900
Cfr10I RCCGGY 2 cut(s) 2277, 7830
Cfr13I GGNCC 9 cut(s) 247, 2203, 3341, 3628, 4602, 4978, 5163, 5433, 7563
ClaI ATCGAT 3 cut(s) 108, 3939, 5404
CseI GACGC 3 cut(s) 63, 247, 3358
CspAI ACCGGT 1 cut(s) 2277
DraI TTTAAA 1 cut(s) 1497
DrdI GACNNNNNNGTC 3 cut(s) 179, 2443, 4370
DriI GACNNNNNGTC 2 cut(s) 1882, 4576
DseDI GACNNNNNNGTC 3 cut(s) 179, 2443, 4370
EaeI YGGCCR 6 cut(s) 3, 1027, 2511, 3207, 3688, 4543
EagI CGGCCG 1 cut(s) 2511
Eam1104I CTCTTC 4 cut(s) 435, 1995, 3713, 4661
Eam1105I GACNNNNNGTC 2 cut(s) 1882, 4576
EarI CTCTTC 4 cut(s) 435, 1995, 3713, 4661
Ecl136II GAGCTC 1 cut(s) 4109
EclXI CGGCCG 1 cut(s) 2511
Eco130I CCWWGG 5 cut(s) 903, 3313, 3438, 5139, 6837
Eco24I GRGCYC 4 cut(s) 158, 342, 1219, 4111
Eco31I GGTCTC 1 cut(s) 616
Eco32I GATATC 4 cut(s) 376, 3310, 4081, 4402
Eco47I GGWCC 7 cut(s) 247, 3341, 3628, 4602, 5163, 5433, 7563
Eco47III AGCGCT 1 cut(s) 6952
Eco52I CGGCCG 1 cut(s) 2511
Eco53kI GAGCTC 1 cut(s) 4109
Eco57I CTGAAG 3 cut(s) 1285, 2247, 4491
Eco81I CCTNAGG 2 cut(s) 1083, 6356
Eco88I CYCGRG 2 cut(s) 6028, 6449
EcoICRI GAGCTC 1 cut(s) 4109
EcoNI CCTNNNNNAGG 2 cut(s) 754, 2762
EcoO109I RGGNCCY 2 cut(s) 3628, 4978
EcoRI GAATTC 4 cut(s) 1723, 2547, 4114, 5011
EcoRII CCWGG 5 cut(s) 378, 1347, 4000, 4064, 5338
EcoRV GATATC 4 cut(s) 376, 3310, 4081, 4402
EcoT14I CCWWGG 5 cut(s) 903, 3313, 3438, 5139, 6837
EcoT22I ATGCAT 2 cut(s) 1639, 4432
EcoT38I GRGCYC 4 cut(s) 158, 342, 1219, 4111
ErhI CCWWGG 5 cut(s) 903, 3313, 3438, 5139, 6837
Esp3I CGTCTC 2 cut(s) 6635, 7720
FaqI GGGAC 8 cut(s) 19, 1176, 1483, 1529, 3327, 3641, 5176, 6984
FauI CCCGC 1 cut(s) 3421
FauNDI CATATG 4 cut(s) 1053, 1639, 2837, 4650
FbaI TGATCA 5 cut(s) 1642, 2407, 3871, 4591, 6814
FblI GTMKAC 3 cut(s) 2492, 4551, 7405
FriOI GRGCYC 4 cut(s) 158, 342, 1219, 4111
FspI TGCGCA 1 cut(s) 1815
GsaI CCCAGC 1 cut(s) 3530
GsuI CTGGAG 6 cut(s) 401, 2516, 3069, 5361, 6864, 7217
HaeII RGCGCY 2 cut(s) 6954, 7689
HapII CCGG 4 cut(s) 51, 2278, 3376, 7831
HgaI GACGC 3 cut(s) 63, 247, 3358
Hin1I GRCGYC 3 cut(s) 55, 239, 5992
HincII GTYRAC 9 cut(s) 1188, 1546, 2142, 2870, 3864, 5850, 5890, 6366, 6499
HindII GTYRAC 9 cut(s) 1188, 1546, 2142, 2870, 3864, 5850, 5890, 6366, 6499
HindIII AAGCTT 5 cut(s) 1130, 1243, 1408, 2229, 5774
HpaI GTTAAC 3 cut(s) 5850, 6366, 6499
HpaII CCGG 4 cut(s) 51, 2278, 3376, 7831
HphI GGTGA 8 cut(s) 833, 1366, 3896, 4729, 4799, 5775, 6808, 7997
Hpy99I CGWCG 3 cut(s) 185, 3374, 5997
Hsp92I GRCGYC 3 cut(s) 55, 239, 5992
KroI GCCGGC 1 cut(s) 7830
KroNI GCCGGC 1 cut(s) 7832
Ksp22I TGATCA 5 cut(s) 1642, 2407, 3871, 4591, 6814
KspAI GTTAAC 3 cut(s) 5850, 6366, 6499
LguI GCTCTTC 1 cut(s) 3713
MbiI CCGCTC 1 cut(s) 362
MfeI CAATTG 4 cut(s) 925, 2448, 2873, 6492
MflI RGATCY 9 cut(s) 474, 3281, 3443, 3547, 3680, 4759, 5614, 6157, 7240
MhlI GDGCHC 5 cut(s) 158, 342, 1219, 4111, 5538
MlsI TGGCCA 3 cut(s) 5, 1029, 4545
MluI ACGCGT 1 cut(s) 5766
MluNI TGGCCA 3 cut(s) 5, 1029, 4545
Mox20I TGGCCA 3 cut(s) 5, 1029, 4545
Mph1103I ATGCAT 2 cut(s) 1639, 4432
MroNI GCCGGC 1 cut(s) 7830
MroXI GAANNNNTTC 4 cut(s) 2076, 3105, 6579, 7275
MscI TGGCCA 3 cut(s) 5, 1029, 4545
MslI CAYNNNNRTG 7 cut(s) 1094, 1210, 2308, 5859, 6226, 6696, 7291
Msp20I TGGCCA 3 cut(s) 5, 1029, 4545
MspA1I CMGCKG 1 cut(s) 5362
MspCI CTTAAG 3 cut(s) 979, 2732, 7055
MspI CCGG 4 cut(s) 51, 2278, 3376, 7831
MspR9I CCNGG 7 cut(s) 51, 380, 1349, 3376, 4002, 4066, 5340
MunI CAATTG 4 cut(s) 925, 2448, 2873, 6492
Mva1269I GAATGC 8 cut(s) 3043, 4330, 4614, 5879, 6691, 7155, 7516, 8074
MvaI CCWGG 5 cut(s) 380, 1349, 4002, 4066, 5340
MvnI CGCG 4 cut(s) 1980, 5768, 6296, 6381
NaeI GCCGGC 1 cut(s) 7832
NciI CCSGG 2 cut(s) 51, 3376
NdeI CATATG 4 cut(s) 1053, 1639, 2837, 4650
NgoMIV GCCGGC 1 cut(s) 7830
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 7 cut(s) 3805, 4997, 5781, 6584, 6771, 7117, 7985
NsbI TGCGCA 1 cut(s) 1815
NsiI ATGCAT 2 cut(s) 1639, 4432
NspI RCATGY 9 cut(s) 3032, 3299, 4055, 4465, 4958, 5534, 7013, 7294, 7642
NspV TTCGAA 2 cut(s) 1993, 8159
OliI CACNNNNGTG 2 cut(s) 5859, 7291
PaeR7I CTCGAG 1 cut(s) 6449
PagI TCATGA 4 cut(s) 738, 3604, 7413, 7900
PciI ACATGT 4 cut(s) 4461, 4954, 5530, 7290
PciSI GCTCTTC 1 cut(s) 3713
PctI GAATGC 8 cut(s) 3043, 4330, 4614, 5879, 6691, 7155, 7516, 8074
PdiI GCCGGC 1 cut(s) 7832
PdmI GAANNNNTTC 4 cut(s) 2076, 3105, 6579, 7275
PflMI CCANNNNNTGG 1 cut(s) 5588
PfoI TCCNGGA 2 cut(s) 378, 5338
PinAI ACCGGT 1 cut(s) 2277
Ppu21I YACGTR 1 cut(s) 1745
PpuMI RGGWCCY 1 cut(s) 3628
PscI ACATGT 4 cut(s) 4461, 4954, 5530, 7290
PshBI ATTAAT 2 cut(s) 960, 4478
PsiI TTATAA 1 cut(s) 1734
Psp124BI GAGCTC 1 cut(s) 4111
Psp1406I AACGTT 3 cut(s) 254, 6643, 6756
Psp5II RGGWCCY 1 cut(s) 3628
Psp6I CCWGG 5 cut(s) 378, 1347, 4000, 4064, 5338
PspFI CCCAGC 1 cut(s) 3526
PspGI CCWGG 5 cut(s) 378, 1347, 4000, 4064, 5338
PspPI GGNCC 9 cut(s) 247, 2203, 3341, 3628, 4602, 4978, 5163, 5433, 7563
PspPPI RGGWCCY 1 cut(s) 3628
PsrI GAACNNNNNNTAC 2 cut(s) 3822, 3854
PstI CTGCAG 2 cut(s) 3395, 6958
PstNI CAGNNNCTG 2 cut(s) 848, 7121
PsuI RGATCY 9 cut(s) 474, 3281, 3443, 3547, 3680, 4759, 5614, 6157, 7240
PvuII CAGCTG 1 cut(s) 5362
RseI CAYNNNNRTG 7 cut(s) 1094, 1210, 2308, 5859, 6226, 6696, 7291
SacI GAGCTC 1 cut(s) 4111
SapI GCTCTTC 1 cut(s) 3713
Sau96I GGNCC 9 cut(s) 247, 2203, 3341, 3628, 4602, 4978, 5163, 5433, 7563
ScrFI CCNGG 7 cut(s) 51, 380, 1349, 3376, 4002, 4066, 5340
SduI GDGCHC 5 cut(s) 158, 342, 1219, 4111, 5538
SfcI CTRYAG 6 cut(s) 1923, 2611, 2982, 3391, 4811, 6954
Sfr274I CTCGAG 1 cut(s) 6449
SfuI TTCGAA 2 cut(s) 1993, 8159
SinI GGWCC 7 cut(s) 247, 3341, 3628, 4602, 5163, 5433, 7563
SlaI CTCGAG 1 cut(s) 6449
SmiMI CAYNNNNRTG 7 cut(s) 1094, 1210, 2308, 5859, 6226, 6696, 7291
SpeI ACTAGT 2 cut(s) 2495, 7975
SspI AATATT 3 cut(s) 1998, 3239, 7074
SstI GAGCTC 1 cut(s) 4111
StyD4I CCNGG 7 cut(s) 49, 378, 1347, 3374, 4000, 4064, 5338
StyI CCWWGG 5 cut(s) 903, 3313, 3438, 5139, 6837
TatI WGTACW 8 cut(s) 504, 523, 2498, 5629, 6136, 6906, 7329, 7972
TseFI GTSAC 7 cut(s) 3805, 4997, 5781, 6584, 6771, 7117, 7985
Tsp45I GTSAC 7 cut(s) 3805, 4997, 5781, 6584, 6771, 7117, 7985
TspGWI ACGGA 3 cut(s) 1412, 2981, 5408
Van91I CCANNNNNTGG 1 cut(s) 5588
Vha464I CTTAAG 3 cut(s) 979, 2732, 7055
VpaK11BI GGWCC 7 cut(s) 247, 3341, 3628, 4602, 5163, 5433, 7563
VspI ATTAAT 2 cut(s) 960, 4478
XagI CCTNNNNNAGG 2 cut(s) 754, 2762
XbaI TCTAGA 6 cut(s) 433, 767, 1886, 2189, 3731, 4231
XceI RCATGY 9 cut(s) 3032, 3299, 4055, 4465, 4958, 5534, 7013, 7294, 7642
XcmI CCANNNNNNNNNTGG 4 cut(s) 4072, 5137, 5833, 7557
XhoI CTCGAG 1 cut(s) 6449
XmiI GTMKAC 3 cut(s) 2492, 4551, 7405
XmnI GAANNNNTTC 4 cut(s) 2076, 3105, 6579, 7275
ZraI GACGTC 1 cut(s) 5993
Zsp2I ATGCAT 2 cut(s) 1639, 4432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.