Rh2CG374600

Small subunit processome component 20 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005459
Physical Location & Seq
Forward (+)
50865813 .. 50881445
15633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG374600.1

Sequence Viewer

Length: 6405 bp
ATGGCAACCTCTTCACAAGCTCAGGCCGTCAAGTCCCTCAACAAATCCGCCGGACGCCGCCGCTTTGTCTTCAAGAGCGTCTCTGAGAGACTAGAAGAAGTCGAAATCGATGTCTTCCGAAGCCTCGATAAGCTAAAGGACGAGCCTTCCCCAGGCTCCACGTTTTTCCGGGACTGCCTCGTAGAATGGAGGGAATTGAATACGGCAGAGGATTTCATCTCATTCCACGAGCAGATGACGCCGTTGGTCCAGACATTGCCTTTGATATTGTTGCACAAGGAGACCATTTTTGAAGCATTGGTTTCTAGATTGCAAATCAGTGCAAGGTTATCGCTTGAGCCTATTCTCAGGTTGATTGCATCTCTGGCCCGAGATCTCCTGGAGGACTTTATCCCCTTCTTGCCAAGGATTGTCGACTCTCTAGTGTCTCTTTTAGATAGCGGTGCTGATAGGGAGCCTGAGATCGTGGAGCAGATCTTTACATCCTGGTCGTGCATTATGAGGGATTTGCAGAAATATCTTGTGCACAAGCTTGTAGATATGCTAGAGGTTACTGCAAAGTTAAGATATTATCCAAAGAATTATGTCCAAGAATTAATGGCACAGGCGATGGGATTCTTGCTGAGAACGAGAACTGCACCTTTTGAGCAGCTTGACAAAGGTGTCAGAAAGATCATGCTTGATGTTGTGGAGGAATCAACACCTTTCAGAAAATATGGAGTCAGTGCTTTACTATATTATGCCATGACGGGAACCTCAACAAGGTTCCATTCTAGAGCCAAGCAAGTGTTACTTTTATTGATGGACAACTCAATACTTGGTTCAGCCACTGTTATTGAAGTCTTAATTTCTGCGTTACAGAGATTGTGTGAGGATTTGGACTCCAAGGAGTTAAACTTAATGTTCGAATGCTTATATCAGGAAATAAAGGGCTGTGTGACTAATGGAGGTGTACTGCGTTTAAGCCGGCTGTTGTCACTGCTTGTGTCTACTGTTCAGGTGAAGAATGGGAAGGCGGTTTCTGATTACAAACAAATGCTTGAAATTGTGGGGGTGCTTGTGCGGACATATATCATATCCTCTGGCATTCAGATGGGAGAGGAACATTTATCTGAAGTCGTTGATAAGATTTTTCAGTTAATGCTCAGCATTCTTAGCGGACTGCACACTTATAATGATTTGTCAACCATCTCTGGCTGTTCGTTGCAATGGGCTCCTGTATTTGATTTACAGAAGTCAAGCTTGTTGGGGTTTATTCAACAACTGCTACAAAAGGATATTTGTATAGTAGATACCTTCCGAGTTAACATTTTAAGAGTCATGAATGTTTTAATAGAAACTTCAGAAGAAGATGTTATATATCTGTTAGTCATCTTCTGTGAAAGGCTGCAAAGGGGAGCGCAAAGCTTTAGGTTACTAGATGGATCACCTGAACTGTCCAGGATCCAATGTTTTCTGAGTGGCACGGTCAGTAAATGGGTTGGGGTTTTAAAGGATGTTCAGAATGGGGATTTAGCATCTACTTCAATTCATGAAGCTGACTTGGCCCTGCTGTGGGGAATCATTAACTGCTTTCCGCAAATAGTAGACTCCCAAGAAGGTCCATCCTTGTTACTTGATTTGACAGATGCAATCGATCAACTCCTGATGATTGAAGATGGGAATATTGCAGGCTTTCCTAAACGCACTTGGCAAAGCCTAATTGGCACTTCCTTAAATTCCTATTACAAATTGACTTGCGGTAAAAATTTGGAGCCAGAAACAAGCAGATTTTTAGCTCTTGGAAAAAGACACAAATCATGTTCACATGTGTTGGTTGCTGTTGCTGATTTCTTGGACTCTTTGTATGGGTCTGCGATGGATGGCGACACCCACTTTACAATATATCATCCAGAACTTAGTGCATATATGGCTATGGATGCTTTAAAGATGTTTGCTGACAATTTGTGCCACTCAGACAGAGGGATTCGTGCTTCAACTCTTAGAATATTATGCCACTTTGAAACTTTAAGTTGTGATGAGCCAGTTCTGAAAAAGATGAAAACTGAACTTTCTCCTACTTCTCATGTCGATAACAAAGACTTTAATGTTCTTCAGCTTCTTCTGTCAATCGAGTCAACTCCTCTTTCAGTTTCTACCAGCAGAAAAGTTACTCTATTGATTTCTAGAATACAGATGGGCCTCTCTGCTGGAAAAATATCTGAAGCTTATCTTCCCCTTGTTGTAAATGGCATGATTGGTATCTTCCATAACCGGTTTAGTCATCTTTGGAATCCTGTATCAGAGTGCCTTGCAGTTCTGATAAGCCGAAGTAATGGACTTGTATGGGAAAATTTTCTCAACTATTTTGAGCAATGCCAGTCCTTATTTCAAGCATCTATTGATCATGTTGGCCAAGGTGATACTGTGCTGTCCAACAAGTCAAGTGATCTGGTTGAACGTTTTAATTTGTTTGTTACCCCAACATCTGATAGTACACCAACGGCAACAGTTTTGTCTTCCTTGCTCCAATCTTTACAAAAACTTCCAATCATTGAATCCAAGTCTCATCAGATTCTGCCTTTATTTCTGAAATTTTTGGGCTATAATTGTGAAAATTTTGTAAGTGTGGGATCTTTCAATTCAAATGTTTGTAAAGGTAAAGAGTGGAAACGTGTCCTTAAAGAATGGTTAAACTTGCTGAAACTGATGTACAACCTTAAGCACTCATATCAGAATCAGTTTCTTAAAGAGGTTTTGCAAAATAGGCTCTTGGATGAAAATGATGCTGAAGTACAGATGAAGGTTCTCGATTGCCTCTTAATCTGGAAAGATGATTTCCTGCTCCCATATAGTCAGCAATTGAAAAACTTGGTCAGCTTCCAAAATTTAAGAGAAGAATTAACAAGATGGAGTTTGTCCAGAGAGTCTAATCTAATTGAAGAACAACACAGAGCTTACCTTGTGCCCATTGTTATCCGTCTTCTGATTCCCAACATCCGGAAATTGAAGAAACATGCTTCTCAGAAGCACTCAAGAGTAAATCATCGCAAGGCAGTGCTCGGTTTCATAGCTCAACTTGATGTTGAAGAGCTACCTCTTTGCTTTGCATTGTTGATAAAGCCCTTGCAAATTATTTCGATAGGAAGTGAAGGTGCTGCAAACTGGTTTTGGAGCTCATCAAATGGTTCTGTGGAAGAATTTCAAACATTGAATTTCTTGAAGTATTTCACGTTTAGCAATATTACAGCCTTGTCTTGGAAGAAAAGAAGTGCTTTTCTACATGTGATTGAAGATGTTCTTGGAGTTTTTGATGCATCACGCGTTGGTCCCTTCCTTGATTTCATAATGGGATGTGTTGTTCGGATATTAGGAAGCAGTACTTTAGGTCTTGATGTGGCAAAAGGCAAAGGATCTTCTTCCCTTACTAATTATTCTGATGCTAATCTTGCTTCCCTTGGATATGATGGGGCAGTGGATAATAATGTTTTGATATCTACGGCTGTGGGGCAGTTGAAGGATTTGAGATCTTTATCCTTGAAAATTGTGTCCTTTGTTCTGAATAAGTACGAAGATCACGACTTTAGCTGTGAATTCTGGGATATTTTCTTTGGGTCGGTGAAGCCCTTAATTGATGGTTTCAAGCAGGAGGGATTCAGTGGCCAGAAGCCTAGTTCACTCTTCTCTTGCTTTCTTGCTATGTCTAGAAGCGAAAAATTAGTATCACTGCTGTGTAGGGAGCAAAACCTTGTCCCTGATATACTCTCAATTCTAACCGTCACGTCAGCATCTGAAGCTATTGTGGCTTGTGTTCTGAACTTTGTTGAGAACTTGTTGATTCTTGATGATGAATTGGATGTTGAAGACAATGCTGGAAAAAGAGTTATACTTCTGTACCTTGAAGCACTAGTTGATAACTTGCATCGTCTCTTCGAAAATAATGTTGCAGCCAAGAGGAAATTGCTTAAACACCCAGGGGAGACAGAAGTGAGGATTTTTAAAATATTACCAAAGTATATAAGTGATGCATTGTCAGCCCGGAAATTCGTGGATATATTGCTCCCTGTTTTAGCAAATGGAGCTCAAGATTCAGAATTTCGATTTGAAGCTGTGCAAGTCATTTGTGATATTGTTCCAGTACTAGGGAGTGACGTTACAAATAATATTTTGAATGCAGTATCTCCATTACTTATTTCTACCGATCTAGATAAGCGTTTAGTTATCTGTAATCTTCTGGACACACTTGCCAGAGCGGACCCTTCCATTCAATTTGTGGCAAAACTTGTCCAGGACTTGAATGCAACCTCTATCACGGAAATAGATAGCCTTGATTATGATAGAGTGCTCAATGCTTATGGAAAGATCACGGTTGATATGTTCAATACCATTCGAGAGGATCATGCATTGGTCATATTGTCTCACTGTGTCTATGACATGTCATCTGACGAATCAACCTTGAGGCACCGAGCTTATGATTCATTGCTTTCATTTGTTGAATTTTCTGCCCTCGTACTTGGCAAAGTATTGAACAATGACTCTGAACTGCCTGACGAGATGTTAGCCTCTGAGGATCATTGCTGGACAAAAGTTTGCATTCAGCGCATGATAAGCAAATTTCTTTTAAAGCATATGGCTAATGCTATGAAGAGTGGGACAGCTGTTAGAGAGGAATGGGTTGAGTTACTTAGAGAAATGGTGTTAAAACTTCCAGAAGTGGCAAACCTTGGTTCACTGAAACCTCTTCAGGATGAAAATCTTGAAATAGATTTTTTCAAGAATATCCTTCATATACAGAAACATAGGAGAGCAAGGGCAATGAAACGCTTTAAGAATTTTGTCACAAACAGCTATATGCCAGAGGGCATCACAAAGAAACTGTTTGTTCCCTTCTTCTTCACGATCTTGATGGAGGAAGAAAAAGGAGAGCATATAAAAAATATGTGCATAGAGGTGATTGCTTCAATTTCAAGCAGGGAGTGGAGTTCATCCTACTTGTTGCTGATGAGATGCTTCAATGAGATTTCCAAAAATCCTCTGAAACAGAAGCTTCTTTTGCGGCTAATTTGCTCTATCTTGCACCAGTTCCACTTTTCAGAGACAATTGATACTGCCTCTGTAAATGAAACACAAACATGCCTTCATAAAACTGTGCTTCCTAAGATACAAAAGTTACTCAGCGATTCTGAAAAGGTCAGTGTTAACATCAGTCTTGCTGCACTGAGAGTATTAAAGTTGCTACCTGGAGATGTAATGGACTCGCAGCTTCCTAGCATTATTCATCGCATTTCAAACTTTTTGAAGAACAGATTAGAAAGCATCCGTGATGAAGCTAGGAGTGCTTTGGCTGATTGTTTGAAGGAGCTTGGGTTGGAATACTTGCATTTTATAGTCAAAGTTTTGCGAAGCACTTTAAAACGTGGATTTGAGTTGCATGTCTTGGGATATACTCTAAACTTTATCTTATCAAAGTTTCTCGTTACTCCTATCAGCGGGAAACTGGACTACTGTTTGGAAGATCTGCTTTCTATTGCACAGAATGATATTCTTGGAGATGTTGCCGAGGAAAAAGAGGTTGAGAAGATTGCTTCCAAAATGAAAGAAACAAAGAAGCAAAAGTCTTTTGAAACTCTGAAATTGATTGCTCAAAGCATAACATTCAAAAGCCATGCCTTGAAGCTTCTATCACCTGTTATAACTCAATTTGAGAAACATCTTACACCAAAAACAAAGTCAAAATTGGAAAGTATGTTGAATCACATAGCAGCTGGTATTGAGTGTAATCCAACTGTTGATCAGACTGACCTTTTTATATTTGTACATGGCCTGATTGAAGATGGAATAAAAGAAGAAAATGGTAAGGGTGAGACTTCGTTCATTACGGGGGGAAATGGACATCGTCGAAGGGATGTGGTTGGAAAAGTTGATTCCTCAGGCCGCATTGCAGGTGCTAAATCAGTGTGTTCACATCTTATTTCTGTGTTTGCTCTTGGGATGTTGCAGAAACGCATAAAGAATTTGAAAATGAAAATTGTCTTTGATTGTTTCGAAAAAATTTTGTCTGAAATGAGTCGGGAGGATTGCCTGCTTTATGCTTATGAAATGTTGCAGCCCTTGTATAAAGTTTGCGAAGGATTTTCTGGGACTGTGATCCCTGAAAATATGAAGCAATTAGCAGAAGAAGTTTCTGGACGTCTACGCAGTAAACTAGGCAGCCAAAATTACGTACAAGTTTACAATGACATCAGGAAACAACTCAAGGCAAAAAGGGATAAGAGGAAACAGGATGAAAAGCGCTTGGCTGTTGTTAATCCTATGCAGAATGCCAAGAGGAAACTGAGGATTGCAGAGAAGCATCGGGCGAACAAGAAAAGGAAGATGATGACAATGAAAATGGGGAGATGGGCACATCATTCCAAGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRIM

Protein Analysis

2134

Amino Acids

241.43

Weight (kDa)

7.5

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UTP20_N PF07539 883 - 1495 6.4e-99 U3 small nucleolar RNA-associated protein 20, N-terminal
UTP20 PF20416 1720 - 1936 7.8e-66 U3 small nucleolar RNA-associated protein 20 domain
UTP20_C PF23099 1979 - 2119 5.1e-12 Small subunit processome component 20 homolog, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1173, 5672
AarI CACCTGC 1 cut(s) 5912
AasI GACNNNNNNGTC 1 cut(s) 662
AatII GACGTC 1 cut(s) 6172
Acc36I ACCTGC 1 cut(s) 5912
AccB1I GGYRCC 1 cut(s) 4440
AccBSI CCGCTC 1 cut(s) 4232
AccI GTMKAC 4 cut(s) 414, 989, 1587, 6172
AccII CGCG 1 cut(s) 3303
AccIII TCCGGA 1 cut(s) 2979
AclI AACGTT 1 cut(s) 2440
AclWI GGATC 8 cut(s) 1432, 1438, 1451, 2620, 3400, 4383, 4557, 6121
AcoI YGGCCR 2 cut(s) 2392, 3640
AcuI CTGAAG 7 cut(s) 1134, 1326, 2078, 2223, 2790, 3792, 4706
AcyI GRCGYC 3 cut(s) 55, 239, 6169
AfeI AGCGCT 1 cut(s) 6272
AfiI CCNNNNNNNGG 8 cut(s) 152, 762, 1554, 1555, 2979, 3237, 4121, 5468
AflII CTTAAG 1 cut(s) 2699
AflIII ACRYGT 5 cut(s) 1807, 2653, 3262, 3301, 4413
AgeI ACCGGT 1 cut(s) 2253
AhlI ACTAGT 1 cut(s) 3886
AjiI CACGTC 1 cut(s) 3762
AjnI CCWGG 7 cut(s) 151, 378, 485, 1439, 3952, 4266, 5218
AjuI GAANNNNNNNTTGG 2 cut(s) 3264, 3296
AleI CACNNNNGTG 1 cut(s) 3709
AloI GAACNNNNNNTCC 2 cut(s) 3324, 3356
Alw21I GWGCWC 5 cut(s) 528, 3042, 3158, 4063, 4326
Alw44I GTGCAC 1 cut(s) 524
AlwI GGATC 8 cut(s) 1432, 1438, 1451, 2620, 3400, 4383, 4557, 6121
AlwNI CAGNNNCTG 3 cut(s) 830, 2557, 3770
Ama87I CYCGRG 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 2979
Aor51HI AGCGCT 1 cut(s) 6272
AoxI GGCC 8 cut(s) 24, 366, 1545, 2179, 2392, 3640, 5800, 5911
ApaLI GTGCAC 1 cut(s) 524
ApeKI GCWGC 9 cut(s) 649, 1387, 3137, 3926, 5192, 5239, 5741, 6085, 6189
ArsI GACNNNNNNTTYG 6 cut(s) 96, 128, 244, 276, 5693, 5725
AseI ATTAAT 1 cut(s) 596
AsiGI ACCGGT 1 cut(s) 2253
Asp700I GAANNNNTTC 4 cut(s) 2334, 3180, 3206, 3276
AspLEI GCGC 3 cut(s) 1402, 4581, 6273
AspS9I GGNCC 7 cut(s) 247, 367, 1546, 1601, 2179, 3308, 4234
AsuC2I CCSGG 2 cut(s) 170, 4018
AsuHPI GGTGA 7 cut(s) 1012, 1419, 2411, 3610, 4942, 5655, 5852
AsuII TTCGAA 3 cut(s) 906, 3912, 6024
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 4 cut(s) 247, 1601, 3308, 4234
AxyI CCTNAGG 1 cut(s) 5908
BaeGI GKGCMC 3 cut(s) 528, 2949, 6385
BaeI ACNNNNGTAYC 4 cut(s) 3857, 3890, 5132, 5165
BalI TGGCCA 2 cut(s) 2394, 3642
BamHI GGATCC 1 cut(s) 1443
BanI GGYRCC 1 cut(s) 4440
BanII GRGCYC 3 cut(s) 1216, 3158, 4063
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 5 cut(s) 61, 106, 2490, 2954, 3849
Bbv12I GWGCWC 5 cut(s) 528, 3042, 3158, 4063, 4326
BbvI GCAGC 9 cut(s) 661, 1374, 3124, 3938, 5179, 5251, 5753, 6097, 6201
BceAI ACGGC 5 cut(s) 11, 219, 226, 2499, 3495
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 7 cut(s) 153, 380, 487, 1441, 3954, 4268, 5220
BclI TGATCA 2 cut(s) 2383, 5770
BcnI CCSGG 2 cut(s) 170, 4018
BcuI ACTAGT 1 cut(s) 3886
BfoI RGCGCY 1 cut(s) 6274
BfrI CTTAAG 1 cut(s) 2699
BfuAI ACCTGC 1 cut(s) 5912
BglI GCCNNNNNGGC 1 cut(s) 1704
BglII AGATCT 4 cut(s) 373, 474, 3506, 5494
BlpI GCTNAGC 1 cut(s) 1145
BmcAI AGTACT 2 cut(s) 3361, 4119
Bme1390I CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
Bme18I GGWCC 4 cut(s) 247, 1601, 3308, 4234
BmeT110I CYCGRG 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 3762
BmgT120I GGNCC 7 cut(s) 247, 367, 1546, 1601, 2179, 3308, 4234
BmrFI CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
BpiI GAAGAC 5 cut(s) 61, 106, 2490, 2954, 3849
BpmI CTGGAG 2 cut(s) 401, 5241
Bpu10I CCTNAGC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 1145
Bpu14I TTCGAA 3 cut(s) 906, 3912, 6024
BpuEI CTTGAG 5 cut(s) 356, 2998, 4047, 4456, 6218
BpuMI CCSGG 2 cut(s) 170, 4018
Bsa29I ATCGAT 2 cut(s) 108, 1635
BsaAI YACGTR 1 cut(s) 6202
BsaBI GATNNNNATC 4 cut(s) 2240, 3423, 3511, 4731
BsaHI GRCGYC 3 cut(s) 55, 239, 6169
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 9 cut(s) 151, 404, 885, 2395, 3436, 3952, 3953, 4702, 5538
BsaWI WCCGGW 2 cut(s) 2253, 2979
BsaXI ACNNNNNCTCC 2 cut(s) 5330, 5360
Bsc4I CCNNNNNNNGG 8 cut(s) 152, 762, 1554, 1555, 2979, 3237, 4121, 5468
Bse118I RCCGGY 2 cut(s) 966, 2253
Bse1I ACTGG 6 cut(s) 2024, 2359, 3149, 4115, 5059, 5481
Bse21I CCTNAGG 1 cut(s) 5908
Bse3DI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
Bse8I GATNNNNATC 4 cut(s) 2240, 3423, 3511, 4731
BseAI TCCGGA 1 cut(s) 2979
BseBI CCWGG 7 cut(s) 153, 380, 487, 1441, 3954, 4268, 5220
BseCI ATCGAT 2 cut(s) 108, 1635
BseDI CCNNGG 9 cut(s) 151, 404, 885, 2395, 3436, 3952, 3953, 4702, 5538
BseJI GATNNNNATC 4 cut(s) 2240, 3423, 3511, 4731
BseLI CCNNNNNNNGG 8 cut(s) 152, 762, 1554, 1555, 2979, 3237, 4121, 5468
BseMI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
BseNI ACTGG 6 cut(s) 2024, 2359, 3149, 4115, 5059, 5481
BseRI GAGGAG 1 cut(s) 2112
BseSI GKGCMC 3 cut(s) 528, 2949, 6385
BseXI GCAGC 9 cut(s) 661, 1374, 3124, 3938, 5179, 5251, 5753, 6097, 6201
BsgI GTGCAG 3 cut(s) 621, 1148, 5178
Bsh1236I CGCG 1 cut(s) 3303
BshFI GGCC 8 cut(s) 26, 368, 1547, 2181, 2394, 3642, 5802, 5913
BshNI GGYRCC 1 cut(s) 4440
BshTI ACCGGT 1 cut(s) 2253
BshVI ATCGAT 2 cut(s) 108, 1635
BsiHKAI GWGCWC 5 cut(s) 528, 3042, 3158, 4063, 4326
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 6 cut(s) 51, 169, 967, 2254, 2980, 4018
BslFI GGGAC 6 cut(s) 19, 185, 3294, 3716, 4645, 6133
BslI CCNNNNNNNGG 8 cut(s) 152, 762, 1554, 1555, 2979, 3237, 4121, 5468
BsmBI CGTCTC 2 cut(s) 85, 3911
BsmFI GGGAC 6 cut(s) 19, 185, 3294, 3716, 4645, 6133
BsmI GAATGC 7 cut(s) 914, 1086, 1149, 4156, 4282, 4572, 6304
BsnI GGCC 8 cut(s) 26, 368, 1547, 2181, 2394, 3642, 5802, 5913
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 369
Bsp119I TTCGAA 3 cut(s) 906, 3912, 6024
Bsp1286I GDGCHC 8 cut(s) 528, 1216, 2949, 3042, 3158, 4063, 4326, 6385
Bsp13I TCCGGA 1 cut(s) 2979
Bsp1407I TGTACA 2 cut(s) 2691, 5794
Bsp1720I GCTNAGC 1 cut(s) 1145
BspANI GGCC 8 cut(s) 26, 368, 1547, 2181, 2394, 3642, 5802, 5913
BspDI ATCGAT 2 cut(s) 108, 1635
BspEI TCCGGA 1 cut(s) 2979
BspFNI CGCG 1 cut(s) 3303
BspHI TCATGA 2 cut(s) 1320, 1531
BspMI ACCTGC 1 cut(s) 5912
BspPI GGATC 8 cut(s) 1432, 1438, 1451, 2620, 3400, 4383, 4557, 6121
BspQI GCTCTTC 1 cut(s) 3063
BspT104I TTCGAA 3 cut(s) 906, 3912, 6024
BspT107I GGYRCC 1 cut(s) 4440
BspTI CTTAAG 1 cut(s) 2699
BspTNI GGTCTC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 4232
BsrDI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
BsrFI RCCGGY 2 cut(s) 966, 2253
BsrGI TGTACA 2 cut(s) 2691, 5794
BsrI ACTGG 6 cut(s) 2024, 2359, 3149, 4115, 5059, 5481
BssAI RCCGGY 2 cut(s) 966, 2253
BssECI CCNNGG 9 cut(s) 151, 404, 885, 2395, 3436, 3952, 3953, 4702, 5538
BssNI GRCGYC 3 cut(s) 55, 239, 6169
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 7 cut(s) 153, 380, 487, 1441, 3954, 4268, 5220
Bst6I CTCTTC 6 cut(s) 16, 3063, 3665, 3914, 4619, 4725
BstACI GRCGYC 3 cut(s) 55, 239, 6169
BstAFI CTTAAG 1 cut(s) 2699
BstAUI TGTACA 2 cut(s) 2691, 5794
BstBAI YACGTR 1 cut(s) 6202
BstBI TTCGAA 3 cut(s) 906, 3912, 6024
BstC8I GCNNGC 3 cut(s) 968, 1672, 6062
BstENI CCTNNNNNAGG 2 cut(s) 150, 760
BstFNI CGCG 1 cut(s) 3303
BstH2I RGCGCY 1 cut(s) 6274
BstHHI GCGC 3 cut(s) 1402, 4581, 6273
BstNI CCWGG 7 cut(s) 153, 380, 487, 1441, 3954, 4268, 5220
BstNSI RCATGY 6 cut(s) 1811, 2999, 3266, 4417, 5115, 5414
BstSCI CCNGG 9 cut(s) 151, 168, 378, 485, 1439, 3952, 4016, 4266, 5218
BstSLI GKGCMC 3 cut(s) 528, 2949, 6385
BstSNI TACGTA 1 cut(s) 6202
BstUI CGCG 1 cut(s) 3303
BstV1I GCAGC 9 cut(s) 661, 1374, 3124, 3938, 5179, 5251, 5753, 6097, 6201
BstV2I GAAGAC 5 cut(s) 61, 106, 2490, 2954, 3849
BstX2I RGATCY 7 cut(s) 373, 474, 1443, 2612, 3392, 3506, 5494
BstYI RGATCY 7 cut(s) 373, 474, 1443, 2612, 3392, 3506, 5494
Bsu15I ATCGAT 2 cut(s) 108, 1635
Bsu36I CCTNAGG 1 cut(s) 5908
BsuRI GGCC 8 cut(s) 26, 368, 1547, 2181, 2394, 3642, 5802, 5913
BsuTUI ATCGAT 2 cut(s) 108, 1635
BtgZI GCGATG 4 cut(s) 623, 1871, 3011, 5243
BtrI CACGTC 1 cut(s) 3762
BtsI GCAGTG 4 cut(s) 977, 3042, 3459, 3704
BveI ACCTGC 1 cut(s) 5912
Cac8I GCNNGC 3 cut(s) 968, 1672, 6062
CaiI CAGNNNCTG 3 cut(s) 830, 2557, 3770
CciI TCATGA 2 cut(s) 1320, 1531
CfoI GCGC 3 cut(s) 1402, 4581, 6273
Cfr10I RCCGGY 2 cut(s) 966, 2253
Cfr13I GGNCC 7 cut(s) 247, 367, 1546, 1601, 2179, 3308, 4234
ClaI ATCGAT 2 cut(s) 108, 1635
CseI GACGC 3 cut(s) 63, 67, 247
CspAI ACCGGT 1 cut(s) 2253
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
DraI TTTAAA 5 cut(s) 1491, 1926, 3979, 4602, 5391
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 2 cut(s) 2392, 3640
Eam1104I CTCTTC 6 cut(s) 16, 3063, 3665, 3914, 4619, 4725
EarI CTCTTC 6 cut(s) 16, 3063, 3665, 3914, 4619, 4725
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 3156, 4061
Eco105I TACGTA 1 cut(s) 6202
Eco130I CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
Eco24I GRGCYC 3 cut(s) 1216, 3158, 4063
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 3474
Eco47I GGWCC 4 cut(s) 247, 1601, 3308, 4234
Eco47III AGCGCT 1 cut(s) 6272
Eco53kI GAGCTC 2 cut(s) 3156, 4061
Eco57I CTGAAG 7 cut(s) 1134, 1326, 2078, 2223, 2790, 3792, 4706
Eco81I CCTNAGG 1 cut(s) 5908
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 2 cut(s) 3156, 4061
EcoNI CCTNNNNNAGG 2 cut(s) 150, 760
EcoRI GAATTC 1 cut(s) 3572
EcoRII CCWGG 7 cut(s) 151, 378, 485, 1439, 3952, 4266, 5218
EcoRV GATATC 1 cut(s) 3474
EcoT14I CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
EcoT22I ATGCAT 3 cut(s) 3298, 4009, 4384
EcoT38I GRGCYC 3 cut(s) 1216, 3158, 4063
ErhI CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
Esp3I CGTCTC 2 cut(s) 85, 3911
FaqI GGGAC 6 cut(s) 19, 185, 3294, 3716, 4645, 6133
FauI CCCGC 1 cut(s) 5462
FauNDI CATATG 1 cut(s) 4608
FbaI TGATCA 2 cut(s) 2383, 5770
FblI GTMKAC 4 cut(s) 414, 989, 1587, 6172
FriOI GRGCYC 3 cut(s) 1216, 3158, 4063
GlaI GCGC 3 cut(s) 1401, 4580, 6272
GsuI CTGGAG 2 cut(s) 401, 5241
HaeII RGCGCY 1 cut(s) 6274
HaeIII GGCC 8 cut(s) 26, 368, 1547, 2181, 2394, 3642, 5802, 5913
HapII CCGG 6 cut(s) 51, 169, 967, 2254, 2980, 4018
HgaI GACGC 3 cut(s) 63, 67, 247
HhaI GCGC 3 cut(s) 1402, 4581, 6273
Hin1I GRCGYC 3 cut(s) 55, 239, 6169
Hin6I GCGC 3 cut(s) 1400, 4579, 6271
HinP1I GCGC 3 cut(s) 1400, 4579, 6271
HincII GTYRAC 5 cut(s) 415, 1185, 1306, 2118, 5179
HindII GTYRAC 5 cut(s) 415, 1185, 1306, 2118, 5179
HindIII AAGCTT 6 cut(s) 530, 1240, 1405, 2205, 5024, 5654
HpaI GTTAAC 2 cut(s) 1306, 5179
HpaII CCGG 6 cut(s) 51, 169, 967, 2254, 2980, 4018
HphI GGTGA 7 cut(s) 1012, 1419, 2411, 3610, 4942, 5655, 5852
Hpy99I CGWCG 1 cut(s) 5880
HpyCH4IV ACGT 9 cut(s) 161, 2440, 2653, 3212, 3761, 4131, 5395, 6169, 6201
HpySE526I ACGT 9 cut(s) 161, 2440, 2653, 3212, 3761, 4131, 5395, 6169, 6201
Hsp92I GRCGYC 3 cut(s) 55, 239, 6169
HspAI GCGC 3 cut(s) 1400, 4579, 6271
Kpn2I TCCGGA 1 cut(s) 2979
KroI GCCGGC 1 cut(s) 966
KroNI GCCGGC 1 cut(s) 968
Ksp22I TGATCA 2 cut(s) 2383, 5770
KspAI GTTAAC 2 cut(s) 1306, 5179
LguI GCTCTTC 1 cut(s) 3063
Lsp1109I GCAGC 9 cut(s) 661, 1374, 3124, 3938, 5179, 5251, 5753, 6097, 6201
MaeII ACGT 9 cut(s) 161, 2440, 2653, 3212, 3761, 4131, 5395, 6169, 6201
MbiI CCGCTC 1 cut(s) 4232
MfeI CAATTG 2 cut(s) 2840, 5079
MflI RGATCY 7 cut(s) 373, 474, 1443, 2612, 3392, 3506, 5494
MhlI GDGCHC 8 cut(s) 528, 1216, 2949, 3042, 3158, 4063, 4326, 6385
MlsI TGGCCA 2 cut(s) 2394, 3642
MluI ACGCGT 1 cut(s) 3301
MluNI TGGCCA 2 cut(s) 2394, 3642
MmeI TCCRAC 4 cut(s) 2439, 5328, 5786, 5872
Mox20I TGGCCA 2 cut(s) 2394, 3642
Mph1103I ATGCAT 3 cut(s) 3298, 4009, 4384
MroI TCCGGA 1 cut(s) 2979
MroNI GCCGGC 1 cut(s) 966
MroXI GAANNNNTTC 4 cut(s) 2334, 3180, 3206, 3276
MscI TGGCCA 2 cut(s) 2394, 3642
MslI CAYNNNNRTG 4 cut(s) 1091, 3709, 4928, 5110
Msp20I TGGCCA 2 cut(s) 2394, 3642
MspA1I CMGCKG 3 cut(s) 4637, 5469, 5744
MspCI CTTAAG 1 cut(s) 2699
MspI CCGG 6 cut(s) 51, 169, 967, 2254, 2980, 4018
MspR9I CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
MunI CAATTG 2 cut(s) 2840, 5079
Mva1269I GAATGC 7 cut(s) 914, 1086, 1149, 4156, 4282, 4572, 6304
MvaI CCWGG 7 cut(s) 153, 380, 487, 1441, 3954, 4268, 5220
MvnI CGCG 1 cut(s) 3303
NaeI GCCGGC 1 cut(s) 968
NciI CCSGG 2 cut(s) 170, 4018
NdeI CATATG 1 cut(s) 4608
NgoMIV GCCGGC 1 cut(s) 966
NmeAIII GCCGAG 1 cut(s) 5563
NmuCI GTSAC 5 cut(s) 937, 975, 3757, 4127, 4816
NsiI ATGCAT 3 cut(s) 3298, 4009, 4384
NspI RCATGY 6 cut(s) 1811, 2999, 3266, 4417, 5115, 5414
NspV TTCGAA 3 cut(s) 906, 3912, 6024
OliI CACNNNNGTG 1 cut(s) 3709
PagI TCATGA 2 cut(s) 1320, 1531
PaqCI CACCTGC 1 cut(s) 5912
PasI CCCWGGG 1 cut(s) 3953
PciI ACATGT 3 cut(s) 1807, 3262, 4413
PciSI GCTCTTC 1 cut(s) 3063
PcsI WCGNNNNNNNCGW 1 cut(s) 3555
PctI GAATGC 7 cut(s) 914, 1086, 1149, 4156, 4282, 4572, 6304
PdiI GCCGGC 1 cut(s) 968
PdmI GAANNNNTTC 4 cut(s) 2334, 3180, 3206, 3276
PflFI GACNNNGTC 1 cut(s) 5874
PfoI TCCNGGA 4 cut(s) 168, 378, 1439, 4266
PinAI ACCGGT 1 cut(s) 2253
Ppu21I YACGTR 1 cut(s) 6202
PscI ACATGT 3 cut(s) 1807, 3262, 4413
PshBI ATTAAT 1 cut(s) 596
PsiI TTATAA 2 cut(s) 1173, 5672
Psp124BI GAGCTC 2 cut(s) 3158, 4063
Psp1406I AACGTT 1 cut(s) 2440
Psp6I CCWGG 7 cut(s) 151, 378, 485, 1439, 3952, 4266, 5218
PspGI CCWGG 7 cut(s) 151, 378, 485, 1439, 3952, 4266, 5218
PspPI GGNCC 7 cut(s) 247, 367, 1546, 1601, 2179, 3308, 4234
PstNI CAGNNNCTG 3 cut(s) 830, 2557, 3770
PsuI RGATCY 7 cut(s) 373, 474, 1443, 2612, 3392, 3506, 5494
PsyI GACNNNGTC 1 cut(s) 5874
PvuII CAGCTG 2 cut(s) 4637, 5744
RseI CAYNNNNRTG 4 cut(s) 1091, 3709, 4928, 5110
SacI GAGCTC 2 cut(s) 3158, 4063
SalI GTCGAC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 3063
Sau96I GGNCC 7 cut(s) 247, 367, 1546, 1601, 2179, 3308, 4234
ScaI AGTACT 2 cut(s) 3361, 4119
ScrFI CCNGG 9 cut(s) 153, 170, 380, 487, 1441, 3954, 4018, 4268, 5220
SduI GDGCHC 8 cut(s) 528, 1216, 2949, 3042, 3158, 4063, 4326, 6385
SfuI TTCGAA 3 cut(s) 906, 3912, 6024
SinI GGWCC 4 cut(s) 247, 1601, 3308, 4234
SmiMI CAYNNNNRTG 4 cut(s) 1091, 3709, 4928, 5110
SmlI CTYRAG 6 cut(s) 335, 2699, 3013, 4062, 4435, 6233
SmoI CTYRAG 6 cut(s) 335, 2699, 3013, 4062, 4435, 6233
SnaBI TACGTA 1 cut(s) 6202
SpeI ACTAGT 1 cut(s) 3886
SspI AATATT 5 cut(s) 1666, 1989, 3223, 3984, 4144
SstI GAGCTC 2 cut(s) 3158, 4063
StyD4I CCNGG 9 cut(s) 151, 168, 378, 485, 1439, 3952, 4016, 4266, 5218
StyI CCWWGG 5 cut(s) 404, 885, 2395, 3436, 4702
TaiI ACGT 9 cut(s) 164, 2443, 2656, 3215, 3764, 4134, 5398, 6172, 6204
TatI WGTACW 7 cut(s) 952, 2474, 2691, 2773, 3359, 4117, 5794
TauI GCSGC 4 cut(s) 60, 63, 5038, 5916
TseFI GTSAC 5 cut(s) 937, 975, 3757, 4127, 4816
TseI GCWGC 9 cut(s) 649, 1387, 3137, 3926, 5192, 5239, 5741, 6085, 6189
Tsp45I GTSAC 5 cut(s) 937, 975, 3757, 4127, 4816
TspGWI ACGGA 3 cut(s) 2948, 4307, 5288
Tth111I GACNNNGTC 1 cut(s) 5874
Vha464I CTTAAG 1 cut(s) 2699
VneI GTGCAC 1 cut(s) 524
VpaK11BI GGWCC 4 cut(s) 247, 1601, 3308, 4234
VspI ATTAAT 1 cut(s) 596
XagI CCTNNNNNAGG 2 cut(s) 150, 760
XbaI TCTAGA 5 cut(s) 305, 773, 2165, 3683, 4183
XceI RCATGY 6 cut(s) 1811, 2999, 3266, 4417, 5115, 5414
XcmI CCANNNNNNNNNTGG 1 cut(s) 4249
XmiI GTMKAC 4 cut(s) 414, 989, 1587, 6172
XmnI GAANNNNTTC 4 cut(s) 2334, 3180, 3206, 3276
ZraI GACGTC 1 cut(s) 6170
ZrmI AGTACT 2 cut(s) 3361, 4119
Zsp2I ATGCAT 3 cut(s) 3298, 4009, 4384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.