Prupe.3G074200_v2.0.a1

Small subunit processome component 20 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
5349910 .. 5369268
19359 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G074200.1

Sequence Viewer

Length: 8181 bp
ATGGCAACCCCATCACAAGCTCAGGCCGTCAAGTCGCTCAACAAATCCCCAGGACGCCGTCGTTTTGTCTTCAAGAGCTTCTCTCAGAGACTTGAAGAAGTTGAAGTCGATGTATTCCGAAGCCTTGATAAAGTTAAATCAGAGCCGCAAGCGGGCTCTACGTTTTTCCGGGACTGCCTCGTAGAATGGAGGGAATTGAACACGGCTGAGGATTTCATCGCTTTCTATGAGCAAATGACGCCATTGGTCCAAACATTGCCTTTGGTGTTGTTGCATAAGGAAACCATAATCTCAGAACTCCTTTCTAGATTACAGATGAAAGCAAGGTTGTCGCTTGAACCCATTCTCAGGTTAATTGCAGTCCTGTGTAGAGATCTCCTAGAGGACTTTATCCCGTTCTTGCCAAGGATTGCTGACTCTCTAGTGTCTCTCCTCGAATGTGGTGCCGATAGGGAGCCAGAGGCCATTGAGCAGATCTTCACATCTTGGTCATCTATTATGATGTACTTGCAAAAATATCTTGTACAAAAGCTTGTGCATGTTCTAAATGTTACTGTAAATTTGAGATATTATCCAAAAGATTACATCCAAGAATTTATGGCAGAGGGGATGTCATTCTTGCTGAGAAATGCACCTTTTGAGCAGCTTAAAAAAGGTGTCAAAAAGATAATGTTTGAAGTTGTGCAGAAATCAATACCTGTCAGAAAATATGGAGTCAGTGCTTTACTATATTTTGTCATGCGAGGGGCCTCATCAAGGTTCCATTCTAAAGCTGAGCAAGTGTTGCATTTATTGATGGACGACTTGATACTTGGTATTGGTGAAAACTTCAGCCAGGGTTCAGACACTGTTGTTGAAGTCTTAATTTCTGCATTACAAAGATTATGTGATGACTTGGACTCCAAGGAGTTGAACATAATGTTCAATTGCTTATATCAGGAAATAACTGACTGTATGATTAATGGAGGTGTTGAACGTTTAAGCTGCCTGTTGTCATTGCTTGTTTCTACTGTTCAAGTCAAGAATGGCCAAAGGGTTTCTGATTACCAACAAATGCTTGAAATTGTGGGTTTGCTTGTGCGGACATTTATCATGCCTTCTGGCATTACAATGGCAGAGGAACATTCATCTGATGTTGTGGATAAGGTTTTGCAGTTAATGCTCTGTATTCTTAGTGGACTGCACAGTTACAATGATATGTCAACCATATCTAGTTGTTCATTGCAATGGGCTCCTGTATTTGATCTAAAGAACTCAAGCTTGTTAGGTTTTATTCGACAACTTTTACAAAAGGACGTTTGCATACTAGATATCTTCGCAGTTAACATTTTAAGGGCCATGAATGATTTATTAGAAACTTCACAGGAAGATGTAATTTATTTGTTACTCACCTTCAATGAAAAACTACAAATGGAAACCCAAAGCTTGACCTTCTTAGATAGAACACGTGAAGGAGTTCCAAGGATTCAAGGTTTTATGCGTGGGGCTATCAGCAATTGGGTTGGGGTTTTAAAGGGTATTGTAAATGGGGATTCATCATCCACTTTAATTCATGAAGCTGACTTGGCCCTGCTGTGGGGAGTCATTAACTGCTTTCCACAAATAGCAGAATCCGAAGAAGATTTTTCGCTGTTGATGGATTTGTTGGATGCAGATGATCAAATTCTGATGATTGAAGCTGACAATATTGCAGGTTTTCCTAAACACACTTGGGAGAGCCTAATTGGTGCTACCTTAAATTCCTATTACAAACTTACTCGTGGTAAAAAATCTGAGCTTGACGAAACAAGCAGATTTTTGCATCTTGGAAATAGACACAAATCATGTCCACAAGTGTTGGTTGCTGTTGCTGATTTTTTGGATTCCGTGTATGGGCCTATTATGGAAGGAGACACCAAGGCTAGAACTTATCATCCAGAACTACAAGCAGATAAAGCCATAGCTGCTTTGGACATATTTGCTGATAATTTGTGCCACTCAGACAGAGGGATTCGTGCTTCAACTCTTAGAATATTGTGCCACTATGAAACTCTAAATTGCAATATTTGCACAGAGGATGAGCCAGTTGCAAAGAAAATGAGAACTGAAGTTTCTCCTACTTGTCATGTGGATAACCAAGGCTTTAATGTTCTTCCACTCCTCCTCTCAATCGAGTTAACTCCGCTTTCAATTTCTACCAGTAGGAAAGTTACTCTATTGATTTCTAGAATACAGATGGGCCTCTCCACTGGAAGAATAGCTGAAGCTTATCTGCCCCTTGTTTTGAATGGGATGATTGGTATCTTCCATAACCGGTTTAGTTATCTTTGGAATCCTACATCAGAGTGCCTTGCAGTTCTGATTAGCCAAAATACTGGACTTGTATGGGAGAGATTAGTTCATTATTTTGAACAATGCCTATCGAGATTTCAAGCGTCTTTTGATCAAGTTGAGGAAGTAAATTCTAAGTTGACCAACAAGTCAAGTGATCTGGTTGAAGGCTTTAATTTGTGTATTACTTCCAAGTCTGATAGTACGCCTTCTGCAGCAGTATTATCTTCTTTGCTTCAATCTTTACAAAGAATTCCAACCATAATTGAATCCAAGTCTCGTCAGATTATACCTTTGTTTTTAAAGTTTCTGGGCTACAATTGCAAAGACTTTAAAAGCATCGGGTCTTTCAATCCGAGTGTTTGTAAAGGCAAAGAGTGGAAAGGTGTCCTCAAAGAATGGTTAAACCTGCTGAAACTGATGCACAGCCTTAAGTCCTTCTATCAGAATCAGTTTCTTAAAGAGGTCTTACAAAATAGGCTTTTGGATGAAAATGATGCTGAAATACAGACAAAGGTTCTTGATTGCCTGTTAATCTGGAAAGATGATTTCCTGCTCCCATATAGTCAACAATTGAAAAACCTAGCCAGCTTCCATAATTTGAGAGAAGAATTAACAACATGGAGTTTATCCAGAGAGTCTAATCTAATTGAAGAAGAACACAGACCTGACCTTGTGCCTATGGTTATCCGTCTTCTGATGCCCAAAGTTCGCAAATTGAAGAAACATGCTTCTCAGAAGCTTTCAAGAGTAAATCATCGGAAGGCAGTTCTTAGTTTCATAGCTCAAGTTGAAGTTGAAAAGCTTCCTCTTTTCTTTGTGTTGTTAATAAAGCCCTTGCAAATTGTTTCAATGGGAAGTGACAGTGCTGCAAGCTGGTTTTGGACCTTGCCAAACAGTTCTTTGGCTGAATTTCAAGCATTGGATTTCTTAAAATATTTCACTTTGAGCAATATATCAGCCCTATCTTGGAAGAAAAGATCTGGTTTTCTTCATGTGATTGAAGATATCCTTGGAGTTTTTGATGCATCTCGTGTTGGCCCCTTTCTTGATTTTCTAATGGGATGTGTCGTTCGAATATTAGGAAGCTGCAGTTTAAGTCTTGATGTGGCCAAAGGCAATGGATCTTCGGTTGAAAATTATCCAGATGTGGACCTTACTTTGCTTGGAAAAGACAGTGCAGTGGAAAATAATGTTTTGATCTCCACAACTTTGAGGCAGTTAAAGGATTTGAGGTCTTTATGTCTGAAAATTGTATCCTTTGTTCTCAATAAGTATGAAGATCATGAATTTAGTTGTGAGTTCTGGGACTTATTCTTCATGTCATGCAAGCCTTTAATTGATGGTTTCAAGCAGGAAGGACCCAGCGGCCAGAAACCTAGTTCACTATTCTCTTGTTTTCTTGCTCTGTCTAGAAGCCAAAAACTTGTACCACTACTGTATAGGGAACAAAAACTTGTTCCTGATATACTCTCAATTCTAACCGTCATGTCAGCATCTGAAGCTATTGTATCTTGCGTTCTTAAGTTTGTTGAGAACCTTTTGAATCTTGATCACGAGTTGGATGATGAAGATAGTGCTGTAAAAAGAGTTATACTCCCGAACCTTGAAGCACTTATTGATAGCCTGCATAGTCTTTTTCACAGTAATAATGCTACCAAGAGGAAATTGTTTAAACACCCAGGAGACGCAGAAACAAGAATTTTCAAATTTTTACCGAAGTATATAAAAAGTGCAGTGCCAGCCAGGAAATTTGTGGATATATTGCTTCCAGTTTTAGCAAATGGAACTCAAAATTCAGATTTTTGTTTTGAAGTGGTGCAAGTAATTCGTGATATTGTTCCAGTATTGGGGAGTGAGATTACAAATAAAATTCTGAATGCAGTATCTCCCCTACTTACTTCTACTGATCTAGATAAGCGTGTTTTTATCTGTGATCTTCTGGATGCTGTTGCTAGAGTAGACCCTTCTGTTCACTTTGTGGCAAAACTTGTCCAGGACTTGAATGCAACCTCTAATACAGAATTGGGTAGCCTGGATTATGACAATGTTGTCAATGCTTATGAAAAGATCAGTGTTGATATATTCTATACAATTCGAGAGGATCATGCATTGGTCATTTTGTCTCATTGTGTCTATGACATGTCATCTGAAGAATTAATCTTGAGGCACAGTGCTTACAAGTCATTGCGTTCATTTGTTGAATTTGCTGCCCTAATACTTGGCCAAGTGGTGAGCAACCACTGTGAAATGCCTGATATGCCTGACAAGATGTTGGCCTCTGATAATTGTTATTGGACAAGAGCATGCATTCAGAGAATAACAAGCAAGTTTCTCTTGAACCATATGGGTAATGCTTTGAAGAGAGGAATTTCTATTAAAAAGGAATGGGTTGATTTACTAAGAGAAATGGTGTTAAAACTCCCAGAAGTGGCAAATCTGGGTTCATTGAAGGCTCTTTGTGATGAAGATGCTGAAATTGATTTTTTCAACAATATCGTTCACTTACAGAAACATAGGAGAGCAAGGGCTTTGTCACGCTTTAGGAATGTTATCAACGCCAGCTATATGCCAGAGGGCATCACAAAGAAAGTGTTTGTACCCCTCTTTTTCAATATGTTGCTGGAGGAGCATGAAGGAAAAGGGGAACATGTAAAAAATGTCTGCATAGAGGCCCTTGCTTCAATCTCCAGTCACATGGAATGGAATTCATACTACTCATTATTGATGAGATGCTTTAATGAGATGATCAAGAATCCTAATAAACAAAAGCTCCTTCTGAGGCTCATCTGTTCTATCTTGGACCAGTTTCACTTTTCAGATGCCAACGACTCTTTGGATAATGTTTCCAACACAGGGACCACTGATTCTGGCACGTCAATCTTGCGTAGATGTCGTAGTTCTGTTTCGGCAAATGAAATACAGACATGCCTTCAAAAAGTTGTGCTTCCTAAGATACATAAGTTACTGAGTGATTCTGAGAAGGTCAATGCTAACATCAATCTTGCTGCACTGAGAGTATTAAGGTTGCTACCAGGAGATGTAATGGACTCACAGCTTCCTAGCATTGTTCATCGAATTTCAAATTTTTTGAAGAATCGATTAGAAAGCATCCGTGAAGAAGCTAGGTCGGCTTTGGCCGCTTGTTTGAAGGAGCTGGGACTGGAATACTTACATTTTATAGTCAAGGTTTTGCGAAGTACATTGAAACGGGGATATGAGTTACATGTGTTGGGATACACACTGAACTTTATTTTGTCAAAGTTTCTTGTGACTCCAATTAGTGGGAAATTGGACTACTGTTTGGAAGATCTCCTTTATATTGTACAGAATGACATTCTTGGAGACGTTGCTGAGGAAAAAGATGTTGAAAAGATTGCTTCCAAGATGAAAGAAACTAAGAAGCAGAAGTCTTTTGAAACCCTGAGATTGATTGCTCAAAGCATAACATTCAAAAGCCACGCCTTGAAACTTCTATACCCTGTTACTGCTCAATTCGAGAAACATTTGACACCAAAAACCAAGACAAAATTGGAAAGTATGTTAACTCACATAGCGGCTGGTATTGAATACAATCCAACTGTTGATCAGACTGACCTATTTATATTTGTATATGGTCTGATTGAAGATGGAATAAATGAAGAAAATGGCCAGGGTGAGAATATGTTTATTACACGTGTAAATGGACGCCGTCGAAATGATTTGACTAGAAAAGCTGTTTCGTCAGGCTGTGTTGCAGGTGCTAAATCAGTATGTTCACATCTTATTTCAGTGTTTGCTCTTGGGATATTTCAGAAGCGCATAAAGAATTTGAAATTGGGATATAACGATGCACAAATGTTGTCAATGTTAGATCCGTTCGTCTTACTGTTAGGGAAGTGCTTGAACTCCAAGTATGAAGATGTCGTATCTGCATCACTTAGATGCCTCACCCCACTTGTCAGGTTGCCTTTGCCTGCCATCGAATCTCAGGCAGATAATATTAAGGCCGCACTGTTTGGTATTGCTGAAAGTTCAGTTAATACTGGCAGCTCTCTAATGCAGTCATGTCTGAGGCTGTTGACTGTACTTTTGTGCGGCACCAAAATCACTCTGTCATCTGATCAGCTACATCTGTTGATTCAGCTTCCACTGTTTGTTGATCTTGAGAAGAATCCCTCCTTTGTTGCTCTTTCACTTCTAAAGGCAATTCTTAACCGCAAGCTAGTTGTTCCCGAGATATATGATCTTGTAACTAGAGTTGCAGAATTGATGGTAACAAGCCAAGTAGAACCAATTCGTCACAAATGTAGCAAGATTTTATTGCAATTCTTACTTGATTATCGTCTCTCTGAAAAACGCTTGCAACAGCATTTAGATTTTCTGCTGTCAAATCTGAGGTATGAGCATTCGAGTGGAAGAAAATCCGTGCTTGACATGCTCCACACAATTATTGTTAAATTTCCAAAAGGCGTTGTAGATGAGCAATCCCAGACTTTTTTTGTCCATTTGGTGGTTTGCTTGGCTAATGATCAAGATAATGAAGTTCGTTCCTTGGCTGGTGCAGCGATAAAATGTCTCACCGGCTATATAAGCCTACATTCATTTCGTTCCATTCTTGAGTACAGCCTATCTTGGTATTTGGGTGCAAAGCAACAACTGTGGAGTGCTGCAGCACAGGTTTTGGGATTACTGGTTGAAGTCATGGAGAAAGGATTTCACAAGCATATCAACAAAATATTGCCAGTTGAAGTCATGGAGAAAGAATTTCATAAGCATATCAACAGAATATTACCAGTGACTAAATGTATCTTACAGTCTACCATCAATGCAGTCACTGATGGGCAACTAGATTTTTCTAATGAAACTAACATTCCTTTATGGAAGGAGGCATATTATTCGTTAGTGATGCTGGAGAAAATTCTGCATCAGTTCCATGGTCTATGCTTTGATCGGGATCTTGAGGATATATGGGAAGCAATTTGTGAATTACTGCTGCATCCACACATGTGGTTACGTTGCATTTCCTGTCGCCTCGTAGCTTTCTACTTTGCTGCTGTCACAGAGGCATGCTCTAAAAATCATGAAAAACCATTTGGGACTTACTATCTTATTAGACCAAGTAGACTTTTCATGATAGCTGTTTATCTCTGCTGCCAAATGAAGACACAGCTCGTTGATGATGCTGCCAGTAATTTGATTACGCAAAATCTTGTGTCCACTATTTGTGGGGTGCATTCGTTGGTGGGACAAACAGAGTGTGCAGATCCCACCCAGTTCTGGTCCACCCTTGAACAACATGAGCAGGGCTGTTTTCTTAAAGCTTTTGAGTTGCTCGATGCTAGAAAAGGAAGGATCATGTTTTTATCTCTTACCTCTGGAATATGCAACAAAAATAATGAAAGCCCCTCTACGAATATTCGGTACTTGCTTGTCTCCAGCCTGCTCAAAAAAATGGGAAAAATTGCCCTTCAAATGGAGGCTATTCAGATGAAAATTGTCTTTGATAGTTTTGGAAAAATTTCATCCGAAATAAGTCAGGAAGACTGCCTGCTTCATGCCTCTGAAATCTTGCTGCCCTTGTATAAAGTTTGCGAAGGATTTTCTGGGAGAGTGATTCCTGAAAATATGAAGCAATTAGCGCAAGAAATTTCTGAACGTGTACGAAATAAACTAGGCGTACAAAATTATGTACTGGTTTACAATGACATCCGGAAGAATCTCAAGGCAAAGAGAGATAAGAGGAAACATGAAGAAAAGCGCATGGCTGTTACCGATCCTATGCAAAATGCAAAGAGAAAATTGAGGATTGCGGAGAAGCATCGTGCCAACAAGAAAAGGAAGATTATGACAATGAAAATGGGGAGATGGACGCATTCCAAGTCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2727

Amino Acids

309.11

Weight (kDa)

7.71

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 6038
AasI GACNNNNNNGTC 2 cut(s) 2458, 4361
Acc36I ACCTGC 3 cut(s) 1682, 2727, 6038
AccB1I GGYRCC 2 cut(s) 443, 6389
AccB7I CCANNNNNTGG 2 cut(s) 5594, 6802
AccI GTMKAC 3 cut(s) 4272, 7109, 7414
AccIII TCCGGA 1 cut(s) 8001
AclI AACGTT 1 cut(s) 976
AclWI GGATC 7 cut(s) 3442, 4422, 6158, 7254, 7550, 7652, 8060
AcoI YGGCCR 6 cut(s) 1027, 3420, 3679, 4534, 5448, 5959
AcuI CTGAAG 5 cut(s) 814, 2106, 2262, 3831, 4482
AcvI CACGTG 2 cut(s) 1448, 5987
AcyI GRCGYC 3 cut(s) 55, 239, 5998
AdeI CACNNNGTG 1 cut(s) 4291
AflII CTTAAG 2 cut(s) 2741, 3833
AflIII ACRYGT 8 cut(s) 1445, 4452, 4960, 5536, 5984, 5986, 7296, 7948
AgeI ACCGGT 1 cut(s) 2292
AjiI CACGTC 1 cut(s) 5187
AjnI CCWGG 8 cut(s) 49, 834, 3991, 4055, 4305, 4344, 5344, 5961
AjuI GAANNNNNNNTTGG 6 cut(s) 3306, 3338, 6110, 6142, 7368, 7400
AleI CACNNNNGTG 1 cut(s) 7297
AloI GAACNNNNNNTCC 4 cut(s) 1897, 1929, 3366, 3398
AlwI GGATC 7 cut(s) 3442, 4422, 6158, 7254, 7550, 7652, 8060
AlwNI CAGNNNCTG 3 cut(s) 848, 3809, 7127
Ama87I CYCGRG 1 cut(s) 6524
Aor13HI TCCGGA 1 cut(s) 8001
ArsI GACNNNNNNTTYG 2 cut(s) 6364, 6396
AseI ATTAAT 2 cut(s) 960, 4469
AsiGI ACCGGT 1 cut(s) 2292
Asp700I GAANNNNTTC 5 cut(s) 342, 1455, 3114, 6585, 7810
AspLEI GCGC 3 cut(s) 6111, 7933, 8052
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 6 cut(s) 833, 1381, 4555, 5978, 6232, 6862
AsuII TTCGAA 1 cut(s) 3385
AvaI CYCGRG 1 cut(s) 6524
AvaII GGWCC 7 cut(s) 247, 3195, 3463, 3671, 5113, 5169, 7572
BaeI ACNNNNGTAYC 2 cut(s) 5258, 5291
BalI TGGCCA 4 cut(s) 1029, 3422, 4536, 5961
BanI GGYRCC 2 cut(s) 443, 6389
BanII GRGCYC 2 cut(s) 158, 1234
BauI CACGAG 3 cut(s) 1758, 3342, 3866
BbrPI CACGTG 2 cut(s) 1448, 5987
BbsI GAAGAC 4 cut(s) 61, 2996, 7460, 7839
BbvCI CCTCAGC 2 cut(s) 207, 5664
BceAI ACGGC 4 cut(s) 11, 42, 219, 5985
BcgI CGANNNNNNTGC 8 cut(s) 312, 346, 425, 459, 4121, 4155, 7170, 7204
BciT130I CCWGG 8 cut(s) 51, 836, 3993, 4057, 4307, 4346, 5346, 5963
BciVI GTATCC 2 cut(s) 3577, 5540
BclI TGATCA 7 cut(s) 1657, 2422, 3862, 5058, 5896, 6412, 6820
BcnI CCSGG 1 cut(s) 170
BfmI CTRYAG 3 cut(s) 2523, 3400, 6960
BfrI CTTAAG 2 cut(s) 2741, 3833
BfuAI ACCTGC 3 cut(s) 1682, 2727, 6038
BfuI GTATCC 2 cut(s) 3577, 5540
BglII AGATCT 4 cut(s) 373, 474, 3290, 5620
BlpI GCTNAGC 1 cut(s) 774
Bme1390I CCNGG 9 cut(s) 51, 170, 836, 3993, 4057, 4307, 4346, 5346, 5963
Bme18I GGWCC 7 cut(s) 247, 3195, 3463, 3671, 5113, 5169, 7572
BmeT110I CYCGRG 1 cut(s) 6524
BmgBI CACGTC 1 cut(s) 5187
BmiI GGNNCC 9 cut(s) 445, 456, 748, 761, 1233, 3352, 3673, 5170, 6391
BmrFI CCNGG 9 cut(s) 51, 170, 836, 3993, 4057, 4307, 4346, 5346, 5963
BmrI ACTGGG 1 cut(s) 7558
BmuI ACTGGG 1 cut(s) 7558
BpiI GAAGAC 4 cut(s) 61, 2996, 7460, 7839
BplI GAGNNNNNCTC 6 cut(s) 67, 99, 3891, 3923, 7346, 7378
BpmI CTGGAG 4 cut(s) 4955, 4984, 7223, 7711
Bpu10I CCTNAGC 3 cut(s) 21, 207, 5664
Bpu1102I GCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 3385
BpuEI CTTGAG 7 cut(s) 1240, 3081, 4495, 6476, 6929, 7271, 7997
BpuMI CCSGG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 5410
BsaAI YACGTR 2 cut(s) 1448, 5987
BsaBI GATNNNNATC 2 cut(s) 2279, 7245
BsaHI GRCGYC 3 cut(s) 55, 239, 5998
BsaWI WCCGGW 2 cut(s) 2292, 8001
BsaXI ACNNNNNCTCC 4 cut(s) 884, 914, 5067, 5097
Bse118I RCCGGY 2 cut(s) 2292, 6872
Bse3DI GCAATG 6 cut(s) 254, 995, 1220, 1232, 3436, 4496
Bse8I GATNNNNATC 2 cut(s) 2279, 7245
BseAI TCCGGA 1 cut(s) 8001
BseBI CCWGG 8 cut(s) 51, 836, 3993, 4057, 4307, 4346, 5346, 5963
BseCI ATCGAT 1 cut(s) 5410
BseJI GATNNNNATC 2 cut(s) 2279, 7245
BseMI GCAATG 6 cut(s) 254, 995, 1220, 1232, 3436, 4496
BseRI GAGGAG 4 cut(s) 422, 2129, 2132, 4952
BseYI CCCAGC 2 cut(s) 3674, 5467
BsgI GTGCAG 7 cut(s) 704, 1166, 3510, 4065, 5304, 6873, 7572
BshNI GGYRCC 2 cut(s) 443, 6389
BshTI ACCGGT 1 cut(s) 2292
BshVI ATCGAT 1 cut(s) 5410
BsiHKCI CYCGRG 1 cut(s) 6524
BsiSI CCGG 4 cut(s) 169, 2293, 6873, 8002
BslFI GGGAC 6 cut(s) 185, 3632, 5182, 5484, 7402, 7551
BsmBI CGTCTC 3 cut(s) 3990, 5649, 6641
BsmFI GGGAC 6 cut(s) 185, 3632, 5182, 5484, 7402, 7551
BsmI GAATGC 6 cut(s) 4195, 4321, 4620, 6697, 7525, 8164
BsoBI CYCGRG 1 cut(s) 6524
Bsp119I TTCGAA 1 cut(s) 3385
Bsp1286I GDGCHC 2 cut(s) 158, 1234
Bsp13I TCCGGA 1 cut(s) 8001
Bsp1407I TGTACA 2 cut(s) 523, 5635
Bsp1720I GCTNAGC 1 cut(s) 774
Bsp19I CCATGG 1 cut(s) 7225
BspDI ATCGAT 1 cut(s) 5410
BspEI TCCGGA 1 cut(s) 8001
BspHI TCATGA 4 cut(s) 1552, 3595, 7372, 7422
BspLI GGNNCC 9 cut(s) 445, 456, 748, 761, 1233, 3352, 3673, 5170, 6391
BspMAI CTGCAG 3 cut(s) 2527, 3404, 6964
BspMI ACCTGC 3 cut(s) 1682, 2727, 6038
BspPI GGATC 7 cut(s) 3442, 4422, 6158, 7254, 7550, 7652, 8060
BspT104I TTCGAA 1 cut(s) 3385
BspT107I GGYRCC 2 cut(s) 443, 6389
BspTI CTTAAG 2 cut(s) 2741, 3833
BsrDI GCAATG 6 cut(s) 254, 995, 1220, 1232, 3436, 4496
BsrFI RCCGGY 2 cut(s) 2292, 6872
BsrGI TGTACA 2 cut(s) 523, 5635
BssAI RCCGGY 2 cut(s) 2292, 6872
BssNI GRCGYC 3 cut(s) 55, 239, 5998
BssSI CACGAG 3 cut(s) 1758, 3342, 3866
BssT1I CCWWGG 8 cut(s) 404, 903, 1460, 1896, 2116, 3322, 6843, 7225
Bst2BI CACGAG 3 cut(s) 1758, 3342, 3866
Bst2UI CCWGG 8 cut(s) 51, 836, 3993, 4057, 4307, 4346, 5346, 5963
Bst6I CTCTTC 1 cut(s) 4667
BstACI GRCGYC 3 cut(s) 55, 239, 5998
BstAFI CTTAAG 2 cut(s) 2741, 3833
BstAPI GCANNNNNTGC 3 cut(s) 784, 1159, 2046
BstAUI TGTACA 2 cut(s) 523, 5635
BstBAI YACGTR 2 cut(s) 1448, 5987
BstBI TTCGAA 1 cut(s) 3385
BstDSI CCRYGG 1 cut(s) 7225
BstENI CCTNNNNNAGG 1 cut(s) 754
BstHHI GCGC 3 cut(s) 6111, 7933, 8052
BstNI CCWGG 8 cut(s) 51, 836, 3993, 4057, 4307, 4346, 5346, 5963
BstSCI CCNGG 9 cut(s) 49, 168, 834, 3991, 4055, 4305, 4344, 5344, 5961
BstSFI CTRYAG 3 cut(s) 2523, 3400, 6960
BstV2I GAAGAC 4 cut(s) 61, 2996, 7460, 7839
BstX2I RGATCY 8 cut(s) 373, 474, 3290, 3434, 5620, 6163, 7246, 7555
BstXI CCANNNNNNTGG 3 cut(s) 2354, 5008, 7299
BstYI RGATCY 8 cut(s) 373, 474, 3290, 3434, 5620, 6163, 7246, 7555
Bsu15I ATCGAT 1 cut(s) 5410
BsuI GTATCC 2 cut(s) 3577, 5540
BsuTUI ATCGAT 1 cut(s) 5410
BtgI CCRYGG 1 cut(s) 7225
BtgZI GCGATG 1 cut(s) 202
BtrI CACGTC 1 cut(s) 5187
BtsI GCAGTG 2 cut(s) 3498, 4053
BveI ACCTGC 3 cut(s) 1682, 2727, 6038
CaiI CAGNNNCTG 3 cut(s) 848, 3809, 7127
CciI TCATGA 4 cut(s) 1552, 3595, 7372, 7422
CfoI GCGC 3 cut(s) 6111, 7933, 8052
Cfr10I RCCGGY 2 cut(s) 2292, 6872
ClaI ATCGAT 1 cut(s) 5410
CseI GACGC 6 cut(s) 63, 247, 2403, 4007, 6006, 8170
CspAI ACCGGT 1 cut(s) 2292
CspCI CAANNNNNGTGG 4 cut(s) 1818, 1853, 6932, 6967
DraI TTTAAA 4 cut(s) 1512, 2613, 2644, 3985
DraIII CACNNNGTG 1 cut(s) 4291
DrdI GACNNNNNNGTC 2 cut(s) 2458, 4361
DseDI GACNNNNNNGTC 2 cut(s) 2458, 4361
EaeI YGGCCR 6 cut(s) 1027, 3420, 3679, 4534, 5448, 5959
Eam1104I CTCTTC 1 cut(s) 4667
EarI CTCTTC 1 cut(s) 4667
Eco130I CCWWGG 8 cut(s) 404, 903, 1460, 1896, 2116, 3322, 6843, 7225
Eco24I GRGCYC 2 cut(s) 158, 1234
Eco32I GATATC 2 cut(s) 1312, 3319
Eco47I GGWCC 7 cut(s) 247, 3195, 3463, 3671, 5113, 5169, 7572
Eco57I CTGAAG 5 cut(s) 814, 2106, 2262, 3831, 4482
Eco72I CACGTG 2 cut(s) 1448, 5987
Eco88I CYCGRG 1 cut(s) 6524
EcoNI CCTNNNNNAGG 1 cut(s) 754
EcoO109I RGGNCCY 3 cut(s) 747, 3671, 4984
EcoRI GAATTC 2 cut(s) 2562, 5017
EcoRII CCWGG 8 cut(s) 49, 834, 3991, 4055, 4305, 4344, 5344, 5961
EcoRV GATATC 2 cut(s) 1312, 3319
EcoT14I CCWWGG 8 cut(s) 404, 903, 1460, 1896, 2116, 3322, 6843, 7225
EcoT22I ATGCAT 3 cut(s) 3340, 4423, 4622
EcoT38I GRGCYC 2 cut(s) 158, 1234
ErhI CCWWGG 8 cut(s) 404, 903, 1460, 1896, 2116, 3322, 6843, 7225
Esp3I CGTCTC 3 cut(s) 3990, 5649, 6641
FalI AAGNNNNNCTT 8 cut(s) 3306, 3338, 4631, 4663, 5241, 5273, 5610, 5642
FaqI GGGAC 6 cut(s) 185, 3632, 5182, 5484, 7402, 7551
FauI CCCGC 1 cut(s) 145
FauNDI CATATG 1 cut(s) 4656
FbaI TGATCA 7 cut(s) 1657, 2422, 3862, 5058, 5896, 6412, 6820
FblI GTMKAC 3 cut(s) 4272, 7109, 7414
FriOI GRGCYC 2 cut(s) 158, 1234
GlaI GCGC 3 cut(s) 6110, 7932, 8051
GsaI CCCAGC 2 cut(s) 3678, 5471
GsuI CTGGAG 4 cut(s) 4955, 4984, 7223, 7711
HapII CCGG 4 cut(s) 169, 2293, 6873, 8002
HgaI GACGC 6 cut(s) 63, 247, 2403, 4007, 6006, 8170
HhaI GCGC 3 cut(s) 6111, 7933, 8052
Hin1I GRCGYC 3 cut(s) 55, 239, 5998
Hin6I GCGC 3 cut(s) 6109, 7931, 8050
HinP1I GCGC 3 cut(s) 6109, 7931, 8050
HincII GTYRAC 7 cut(s) 1203, 1324, 2157, 2451, 2879, 5856, 6372
HindII GTYRAC 7 cut(s) 1203, 1324, 2157, 2451, 2879, 5856, 6372
HindIII AAGCTT 7 cut(s) 530, 1258, 1423, 2244, 3050, 3113, 7611
HpaI GTTAAC 3 cut(s) 1324, 2157, 5856
HpaII CCGG 4 cut(s) 169, 2293, 6873, 8002
HphI GGTGA 6 cut(s) 833, 1381, 4555, 5978, 6232, 6862
Hpy99I CGWCG 2 cut(s) 63, 6006
HpyCH4IV ACGT 9 cut(s) 161, 976, 1296, 1447, 5186, 5658, 5986, 7306, 7948
HpySE526I ACGT 9 cut(s) 161, 976, 1296, 1447, 5186, 5658, 5986, 7306, 7948
Hsp92I GRCGYC 3 cut(s) 55, 239, 5998
HspAI GCGC 3 cut(s) 6109, 7931, 8050
Kpn2I TCCGGA 1 cut(s) 8001
Ksp22I TGATCA 7 cut(s) 1657, 2422, 3862, 5058, 5896, 6412, 6820
KspAI GTTAAC 3 cut(s) 1324, 2157, 5856
LmnI GCTCC 7 cut(s) 454, 1237, 2871, 4939, 5088, 5464, 6735
MaeII ACGT 9 cut(s) 161, 976, 1296, 1447, 5186, 5658, 5986, 7306, 7948
MfeI CAATTG 4 cut(s) 925, 1495, 2629, 2882
MflI RGATCY 8 cut(s) 373, 474, 3290, 3434, 5620, 6163, 7246, 7555
MhlI GDGCHC 2 cut(s) 158, 1234
MlsI TGGCCA 4 cut(s) 1029, 3422, 4536, 5961
MluNI TGGCCA 4 cut(s) 1029, 3422, 4536, 5961
MlyI GAGTC 8 cut(s) 410, 723, 893, 1590, 2957, 5135, 5354, 5578
MmeI TCCRAC 5 cut(s) 1626, 2591, 3852, 5184, 5912
Mox20I TGGCCA 4 cut(s) 1029, 3422, 4536, 5961
Mph1103I ATGCAT 3 cut(s) 3340, 4423, 4622
MroI TCCGGA 1 cut(s) 8001
MroXI GAANNNNTTC 5 cut(s) 342, 1455, 3114, 6585, 7810
MscI TGGCCA 4 cut(s) 1029, 3422, 4536, 5961
MslI CAYNNNNRTG 6 cut(s) 1109, 1225, 2323, 6232, 6702, 7297
Msp20I TGGCCA 4 cut(s) 1029, 3422, 4536, 5961
MspA1I CMGCKG 1 cut(s) 3678
MspCI CTTAAG 2 cut(s) 2741, 3833
MspI CCGG 4 cut(s) 169, 2293, 6873, 8002
MspR9I CCNGG 9 cut(s) 51, 170, 836, 3993, 4057, 4307, 4346, 5346, 5963
MssI GTTTAAAC 1 cut(s) 3985
MunI CAATTG 4 cut(s) 925, 1495, 2629, 2882
Mva1269I GAATGC 6 cut(s) 4195, 4321, 4620, 6697, 7525, 8164
MvaI CCWGG 8 cut(s) 51, 836, 3993, 4057, 4307, 4346, 5346, 5963
NciI CCSGG 1 cut(s) 170
NcoI CCATGG 1 cut(s) 7225
NdeI CATATG 1 cut(s) 4656
NlaIV GGNNCC 9 cut(s) 445, 456, 748, 761, 1233, 3352, 3673, 5170, 6391
NmuCI GTSAC 8 cut(s) 3170, 4845, 5003, 5581, 6590, 7087, 7123, 7348
NsiI ATGCAT 3 cut(s) 3340, 4423, 4622
NspV TTCGAA 1 cut(s) 3385
OliI CACNNNNGTG 1 cut(s) 7297
PaeI GCATGC 2 cut(s) 4620, 7362
PagI TCATGA 4 cut(s) 1552, 3595, 7372, 7422
PaqCI CACCTGC 1 cut(s) 6038
PciI ACATGT 4 cut(s) 4452, 4960, 5536, 7296
PctI GAATGC 6 cut(s) 4195, 4321, 4620, 6697, 7525, 8164
PdmI GAANNNNTTC 5 cut(s) 342, 1455, 3114, 6585, 7810
PflFI GACNNNGTC 2 cut(s) 57, 6000
PflMI CCANNNNNTGG 2 cut(s) 5594, 6802
PfoI TCCNGGA 2 cut(s) 168, 4305
PinAI ACCGGT 1 cut(s) 2292
PleI GAGTC 8 cut(s) 410, 722, 893, 1589, 2956, 5135, 5354, 5578
PmaCI CACGTG 2 cut(s) 1448, 5987
PmeI GTTTAAAC 1 cut(s) 3985
PmlI CACGTG 2 cut(s) 1448, 5987
PpsI GAGTC 8 cut(s) 410, 722, 893, 1589, 2956, 5135, 5354, 5578
Ppu21I YACGTR 2 cut(s) 1448, 5987
PpuMI RGGWCCY 1 cut(s) 3671
PscI ACATGT 4 cut(s) 4452, 4960, 5536, 7296
PshBI ATTAAT 2 cut(s) 960, 4469
Psp1406I AACGTT 1 cut(s) 976
Psp5II RGGWCCY 1 cut(s) 3671
Psp6I CCWGG 8 cut(s) 49, 834, 3991, 4055, 4305, 4344, 5344, 5961
PspCI CACGTG 2 cut(s) 1448, 5987
PspFI CCCAGC 2 cut(s) 3674, 5467
PspGI CCWGG 8 cut(s) 49, 834, 3991, 4055, 4305, 4344, 5344, 5961
PspN4I GGNNCC 9 cut(s) 445, 456, 748, 761, 1233, 3352, 3673, 5170, 6391
PspPPI RGGWCCY 1 cut(s) 3671
PsrI GAACNNNNNNTAC 4 cut(s) 3558, 3590, 3813, 3845
PstI CTGCAG 3 cut(s) 2527, 3404, 6964
PstNI CAGNNNCTG 3 cut(s) 848, 3809, 7127
PsuI RGATCY 8 cut(s) 373, 474, 3290, 3434, 5620, 6163, 7246, 7555
PsyI GACNNNGTC 2 cut(s) 57, 6000
RseI CAYNNNNRTG 6 cut(s) 1109, 1225, 2323, 6232, 6702, 7297
SchI GAGTC 8 cut(s) 410, 723, 893, 1590, 2957, 5135, 5354, 5578
ScrFI CCNGG 9 cut(s) 51, 170, 836, 3993, 4057, 4307, 4346, 5346, 5963
SduI GDGCHC 2 cut(s) 158, 1234
SfcI CTRYAG 3 cut(s) 2523, 3400, 6960
SfuI TTCGAA 1 cut(s) 3385
SinI GGWCC 7 cut(s) 247, 3195, 3463, 3671, 5113, 5169, 7572
SmiMI CAYNNNNRTG 6 cut(s) 1109, 1225, 2323, 6232, 6702, 7297
SmlI CTYRAG 9 cut(s) 1255, 2741, 3096, 3833, 4474, 6455, 6908, 7250, 8012
SmoI CTYRAG 9 cut(s) 1255, 2741, 3096, 3833, 4474, 6455, 6908, 7250, 8012
SphI GCATGC 2 cut(s) 4620, 7362
SspI AATATT 9 cut(s) 1687, 2013, 2044, 3248, 3390, 6292, 7029, 7080, 7708
StyD4I CCNGG 9 cut(s) 49, 168, 834, 3991, 4055, 4305, 4344, 5344, 5961
StyI CCWWGG 8 cut(s) 404, 903, 1460, 1896, 2116, 3322, 6843, 7225
TaiI ACGT 9 cut(s) 164, 979, 1299, 1450, 5189, 5661, 5989, 7309, 7951
TatI WGTACW 7 cut(s) 504, 523, 5510, 5635, 6376, 6912, 7981
TauI GCSGC 6 cut(s) 148, 3681, 5453, 5870, 6302, 6390
TseFI GTSAC 8 cut(s) 3170, 4845, 5003, 5581, 6590, 7087, 7123, 7348
Tsp45I GTSAC 8 cut(s) 3170, 4845, 5003, 5581, 6590, 7087, 7123, 7348
TspGWI ACGGA 5 cut(s) 1855, 2990, 5414, 6156, 6706
Tth111I GACNNNGTC 2 cut(s) 57, 6000
Van91I CCANNNNNTGG 2 cut(s) 5594, 6802
Vha464I CTTAAG 2 cut(s) 2741, 3833
VpaK11BI GGWCC 7 cut(s) 247, 3195, 3463, 3671, 5113, 5169, 7572
VspI ATTAAT 2 cut(s) 960, 4469
XagI CCTNNNNNAGG 1 cut(s) 754
XbaI TCTAGA 4 cut(s) 305, 2204, 3722, 4222
XcmI CCANNNNNNNNNTGG 4 cut(s) 1945, 4063, 5143, 5839
XmiI GTMKAC 3 cut(s) 4272, 7109, 7414
XmnI GAANNNNTTC 5 cut(s) 342, 1455, 3114, 6585, 7810
Zsp2I ATGCAT 3 cut(s) 3340, 4423, 4622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.