RLG00000019624

Small subunit processome component 20 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005459
Physical Location & Seq
Forward (+)
54412141 .. 54428003
15863 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019624

Sequence Viewer

Length: 7881 bp
ATGGCAACCTCTTCACAAGCTCAGGCCGTCAAGTCCCTCAACAAATCCGCCGGACGCCGCCGCTTTGTCTTCAAGAGCGTCTCTGAGAGACTAGAAGAAGTCGAAATCGATGTCTTCCGAAGCCTTGATAAGCTAAAGGACGAGCCTTCCCCAGGCTCCACGTTTTTCCGGGACTGCCTCGTAGAATGGAGGGAATTGAATACGGCAGAGGATTTCATCTCATTCCACGAGCAGATGACGCCGTTGGTCCAGACATTGCCTTTGATATTGTTGCACAAGGAGACCATTTTCGAAGCATTGGTTTCTAGATTGCAAATCAGTGCAAGGTTATCGCTTGAGCCTATTCTGAGGTTGATTGCAGCTCTGGCCCGAGATCTTCTGGAGGACTTTATCCCCTTCTTGCCAAGGATTGTCGACTCTCTAGTGTCTCTTTTAGATAGCGGTGCTGATAGGGAGCCTGAGATCGTGGAGCAGATCTTTACATCCTGGTCGTGCATTATGAGGGATTTGCAGAAATATCTTGTACACAAGCTTGTAGATATGCTAGAGGTTACTGCAAAGTTAAGATATTATCCAAAGAATTATGTCCAAGAATTAATGGCACAGGCGATGGGATTCTTGCTGAGAACGAGAACTGCACCTTTTGAGCAGCTTGACAAAGGTGTCAGAAATATCATGCTTGATGTTGTGGAGGAATCAACACCTTTCAGAAAATATGGAGTCAGTGCTTTATTATATTATGCCATGACGGGAACCTCAACAAGGTTCCATTCTAGAGCCAAGCAAGTGTTACTTTTATTGATGGACAACTCAATACTTGGTTCATCCACTGTTATTGAAGTCTTAATTTCCGCGTTACAGAGATTGTGTGAGGATTTGGACTCCAAGGAGTTAAACTTAATGTTCGAATGCTTATATCAGGAAATAAAGGGCTGTGTGACTAATGGAGGTGTACTGCGTTTAAGCCAGCTGTTGTCACTGCTTGTCTCTACTGTTCAGGTGAAGAATGGGAAAGCGGTTTCTGATTACAAACAAATGCTTGAAATTGTGGGGGTGCTTGTGCGGACATATATCATACCCTCTGGCATTCAGATGGGAGAGGAACATTTATCTGAAGTTGTTGATAAGATTTTTCAGTTAATGCTCAGCATTCTTAGCGGACTGCACACTCGTAACGATTTGTCAACCATCTCTGGCTGTTCGTTGCAATGGGCTCCTGTATTTGATTTACAGAAGTCAAGCTTGTTGGGGTTTATTCAACAACTGCTACAAAAGGATATTTGTATAGTAGATACCTTCCGAGTTAACATTTTAAGAGTCATGAATGTTTTAATAGAAACTTCAGAAGAAGATGTTATATATCTGTTAGTCATCTTCTGTGAAAGGCTGCAAAGGGGAGAGCAAAGCTTTAAGTTGCTAGATGGATCACCTGAACTGTCCAGGATCCAATGTTTTCTGAGTGGCACGGTCAGTAAATGGGTTGGGGTTTTAAATGGAGTTCAGAATGGGGATTTAGCATCTACGTCAATTCATGAAGCTGACTTGGCTCTGCTGTGGGGAATCATTAACTGCTTTCCGCAAATAGTAGACTCCCAAGAAGGTCCATCCTTGTTACTTGATTTGACAGATGCAGTCAATCAACTCCTGATGATTGAAGATGGGAATATTGCAGGCTTTCCTAAACGCACTTGGCAAAGCCTAATTGGCACTTCCTTAAATTCCTATTACAAATTGACTTGCGGTAAAAATTTGGAGCCAGAAACAAGCAGATTTTTAGCTCTTGGAAAAAGACACAAATCATGTTCACATGTGCTGGTTGCAGTTGCTGATTTTTTGGACTCTTTGTATGGGTCTGCGATGGATGGCGACACCCAGTTTAAAACATATCATCCGGAACTTAGTGCATATATGGCTATGGATGCTTTAAAGATGTTTGCTGACAATTTGTGCCACTCAGACAGAGGGATTCGTGCTTCAACTCTTAGAATATTATGCCACTTTGAAACTTTAAGTTGCGATGAGCCAGTTCTGAAAAAGATGAAAACTGAACTTTCTCCTACTTCTCATGTCGATAACAAAGACTTTAATGTTCTTCAGCTTCTTCTGTCAATCGAGTCAACTCCTCTTTCAATTTCTACCAGCAGAAAAGTTACTCTATTGATTTCTAGAATACAGATGGGCCTCTCTGCTGGAAAAATATCTGAAGCTTATCTTCCCCTTGTTGTAAATGGCATGATTGGTATCTTCCATAACCGGTTTAGTCATCTTTGGAATCCTGTATCAGAGTGCCTTGCAGTTCTGATAAGCCGAAGTAATGGACTTGTATGGGAAAATTTTCTCAACTATTTTGAGCAATGCCAGTCCTTATTTCAAGCATCTATTGATCAAGTTGGCCAAGTTGATGCTGTGCTGTCCAACAAGTCAAGTGATCTGGTTGAACGTTTTAATTTGTTTGTTACCCCAACATCTGATAGTACACCAACAGCAACAGTTTTGTCTTCCTTGCTCCAATCTTTACAAAAACTTCCAATCATTGAATCCAAGTCTCATCAGATTCTGCCTTTATTTCTGAAATTTTTGGGCTATAATTGTGAAAATTTTGTAAGTGTGGGATCTTTCAATTCAAATGTTTGTAAAGGTAAAGAGTGGAAACGTGTCCTTAAAGAATGGTTAAACTTGCTGAAGCTGATGTACAACCTTAAGCACTCATATCAGAATCAATTTCTTAAAGAGGTTTTGCAAAATAGGCTCTTGGATGAAAATGATGCTGAAGTACAGATGAAGGTTCTCGATTGCCTCTTAATCTGGAAAGATGATTTCCTGCTCCCATATAGTCAGCAATTGAAAAACTTGGTCAGCTGCCAAAATTTAAGAGAAGAATTAACAAGATGGAGTTTGTCCAGAGAGTCTAATCTAATTGAAGAACAGCACAGAGCTTACCTTGTGCCCATTGTTATCCGTCTTCTGATTCCCAACGTCCGGAAATTGAAGAAACATGCTTCTCAGAAGCACTCAAGAGTAAATCATCGCAAGGCAGTGCTCGGTTTCATAGCTCAACTTGATGTTGAAGAGCTACCTCTTTTCTTTGCATTGTTGATAAAGCCCTTGCAAATTATTTCGATAGGAAGTGAAGGTGCTGCAAACTGGTTTTGGAGCTCATCAAATGGTTCTGTGGAAGAATTTCAAACATTGAATTTCTTGAAGTATTTCACGTTTAGCAATATTACAGCCTTGTCTTGGAAGAAAAGAAGTGCTTTTCTACATGTGATTGAAGATGTTCTTGGAGTTTTTGATGCATCACGTGTTGGTCCCTTCCTTGATTTCATAATGGGATGTGTTGTTCGGATATTAGGAAGCAGTACTTTAGGTCTTGATGTGGCAAAAGGCAAAGGATCTTCTTCCCTTACTAATTATTCTGATGCTAATCTTGCTTCCCTTGGATATGACGGGGCAGTGGATAATAATGTTTTGATATCTACGGCTGTGGGGCAGTTGAAGGATTTGAGATCTTTATCCTTGAAAATTGTGTCCTTTGTTCTGAATAAGTATGAAGATTACGACTTTAGCTGTGAATTCTGGGATCTTTTCTTCGGGTCGGTGAAGCCCTTAATTGATGGTTTCAAGCAGGAGGGATTCAGTGGCCAGAAGCCTAGTTCACTCTTCTCTTGCTTTCTTGCTATGTCTAGAAGCGAAAAATTAGTATCGCTGCTGTGTAGGGAGCAAAACCTTGTCCCTGATATACTCTCAATTCTAACCGTCACGTCAGCATCTGAAGCTATTGTAGCTTGTGTTCTGAACTTTGTTGAGAACTTGTTGATTCTTGATGATGAATTGGGTGTTGAAGACAATGCTGGAAAAAGAGTTATACTTCTGTACCTTGAAGCGCTAGTTGATAACTTGCATTGTCTCTTCGAAAATAATGTTGCAGCCAAGAGGAAATTGCTTAAACACCCAGGGGAGACAGAAGTGAGGATTTTTAAAATATTACCAAAGTATATAAGTGATGCATTGTCAGCCCGGAAATTTGTGGATATATTGCTCCCTGTTTTAGCAAATGGAGCTCAAGATTCAGAATTTCGATTTGAAGCTGTGCAAGTCATTTGTGATATTGTTCCAGTACTAGGGAGTGACATTACAAATAATATTTTGAATGCAGTATCTCCATTACTTATTTCTACCGATCTAGATAAGCGTTTAGTTATCTGTAATCTTCTGGATACACTTGCCAGAGCAGACCCTTCCGTTCAATTTGTGGCAAAACTTGTCCAGGACTTGAATGCAACCTCTATCACGGAAATAGATAGCCTTGATTATGATAGAGTGCTCAATGCTTATGGAAAGATCACGGTTGATATGTTCAATACCATTCAAGAGGATCATGCATTGGTCATATTGTCTCACTGTGTCTATGACATGTCATCTGACGAATCAACCTTGAGGCACCAAGCTTATGATTCATTGCTTTCATTTGTTGAATTTTCTGCCCTCGTACTTGGCAAAGTATTGAACAATGATTCTGGAATGCCTGACAAGATGTTAGCCTCTGAGGATCATTGCTGGACAAAAGTTTGCATTCAGCGCATAATAAGCAAATTTCTTTTAAAGCATATGGCTAATGCTATGAAGAGTGGGACAGCTGTTAGAGAGGAATGGGTCGAGTTACTTAGAGAAATGGTGTTAAAACTTCCAGAAGTGGCAAACCTTGGTTCACTGAAACCTCTTCAGGATGAAAATCTTGAAATAGATTTTTTCAAGAATATCCTTCATATACAGAAACATAGGAGAGCAAGGGCAATGAAACGCTTTAAGAATTTTGTCACAAACAGCTATATGCCAGAGGGCATTACAAAGAAACTGTTTGTTCCCTTCTTCTTCACGATCTTGATGGAGGAAGAAAAAGGAGAGCATATAAAAAATATGTGCATAGAGGTGATTGCTTCAATTTCAGGCAGGGAGTGGAGTTCATCCTACTTGTTGCTGATGAGATGCTTCAATGAGATTTCCAAAAATCCTGTGAAACAGAAGCTTCTTTTGCGGCTAATTTGCTCTATCTTGCACCAGTTCCACTTTTCAGAGACAATTGATACTGCCTCTGTAAATGAAACACAAACGTGCCTTCATAAAACTGTGCTTCCTAAGATACAAAAGTTACTCAGCGATTCTGAAAAGGTCAGTGTTAACATCAGTCTTTCTGCACTGAGAGTATTAAAGTTGCTACCTGGAGATGTAATGGACTCGCAGCTTCCTAGCATTATTCATCGCATTTCAAACTTTTTGAAGAACAGATTAGAAAGTATCCGTGATGAAGCTAGGAGTGCTTTGGCTGATTGTTTGAAGGAGCTTGGGTTGGAATACTTGCATTTTATAGTCAAAGTTTTGCGAAGCACTTTAAAACGTGGATTTGAGTTGCATGTCTTGGGATATACTCTAAACTTTATCTTATCAAAGTTTCTCGGTACTCCTCTCAGTGGGAAACTGGACTACTGTTTGGAAGATCTGCTTTCTATTGCACAGAATGATATTCTTGGAGATGTTGCCGAGGAAAAAGAGGTTGAGAAGATTGCTTCCAAAATGAAAGAAACAAAGAAGCAAAAGTCTTTTGAAACTCTGAAATTGATTGCTCAAAGCATAACATTCAAAAGCCATGCCTTGAAGCTTCTATCACCTGTTATAACTCAATTTGAGAAACATCTTACACCAAAAACAAAGTCAAAATTGGAAAGTATGTTGAATCACATAGCAGCTGGTATTGAGTGTAATCCAACTGTTGATCAGACTGACTTTTTTATATTTGTACATGGCCTGATTGAAGATGGAATAAAAGAAGAAAATGGTAAGGGTGAGACTTCGTTCATTACGGGGGGAAATGGACATCGTCGAAGGGATGTGGTTGGAAAAGTCGATTCCTCAGGCCGCATTGCTGGTGCTAAATCAGTGTGTTCACATCTTATTTCTGTGTTTGCTCTTGGGATGTTGCAGAAACGCATAAAGAATTTGAAAGTGAGAAAAAATGATGTACAAATATTGTCAATGTTGGATCCTTTTGTCATACTGTTAGGGAAGTGCTTGAATTCCAAGTATGAAGATGTCTTATCTGCAACACTTAGATGCCTAACTTCATTGGTCAGGTTGCATTTACCTGGCATTGAAGATCAAGCAGATGGTATAAAAGCAGTGCTCTTTGATATTGCTCATAGTTGGTTAAATACCGGCAGTTCTCTAATGGAGTCATGTCTGAGGCTGTTAACTGTACTTTTGCGGGGCAACAAAATTACTCTTTCCTCCGATCATCTACATCTATTGATTCAGCTTCCAGTGTTTGTTGATATTGAAAGGGACCCCTCATTTGTTGCTCTTTCACTTCTGAAGGCAATTGTTAAACGCAAGCTAGTTGTTCCGGAGATATATGATCTTGTTACTAGAGTCTCAGAATTGATGGTAACAAGTCAAGTAGAACCAATTCGTCACAAATGTAGTCAGATTCTGTCTCACTTCTTAAATGATTATCCTCTTTCAGAAAAACGATTGCAACAACATTTGGATTTTTTGCTGTCTAATCTGAGGTATGAGCACTCTAGTGGAAGAAAAACTGTGCTTGAAATGCTCCATGCAGTTATCGTTAAAAATCCACGACATGTTGTAGATGAGCAATCACAGACGTTTTTTGTCCATTTGGTGGTTTGCTTGGCTAATGATAGGGATAATGAAGTTCGTTTGATGGCTGGTGCGGCTATAAAACATCTCACTGGTTGTGTAAGCCCACACTCACTTCTCTCCATTCTTGAGTACAGTCTATCTTGGTATTTGGGTGAGAAGCAGCAACTGTGGGGTGCAGCAGCACAGGAGTCCATCAAACAGAAAACCGCCAAGCACCCATGGCACATAGCCATGGAGAAAACAATATGTTTGGAAAAGCAAATGAGGAAGTTTTTCTGGAAGCAGAGCATCTGTGATATATGGGAAGCAATTTGTGAGTTACTCCTGCATCCACACATGTGGTTACGTTGCATTTCAAGTCGTCTTGTAGCCTTCTACTTTGCTTCCGTAAAAGAGTCTTGCTCAGGAGATCGTGAAAATCCATTTGGCACTTACTACCTTATAAAACCTAATAAACTTTTCTTGATAGCTGCATATATCTGCTGCCAGCTAAAGACACAACTCATTGATGATGCAGCCAACAAACTGATTACACAAAATCTTGCATTCACTGTGTGTGGTGTGCACTCTTTGATGGGACAAACTGAGTGTGCAGATTCTCACCAGTTTTGGTTTAACCTTGAACAGCATGAGCAAGACCGATTTCTTAAAGCTTTTGAGTTGCTTGAAGCTAGAAAAGGAAAGACCACATTTTTATCTCTTACCTCTGGCATGTGTGACACAAATGATGAAAATCCCTCTAAGAATATTCGATGCTTGCTTGTCTCTAACTTGCTCAAGAAAATGGGAAAAATCGCCCTTCAAATGGAGGCTGTCCAGATGAAAATTGTTTTTGATTGTTTCGAAAAAATTTTGTCTGAAATGAGTCGGGAGGACTGCCTGCTTTATGCTTATGAAATGTTGCAGCCCTTGTATAAAGTTTGCGAAGGATTTTCTGGGACTGTGATCCCTGAAAATATGAAGCAATTAGCAGAAGAAGTTTCTGGACGTCTACGCAGTAAACTAGGCAGCCAAAATTATGTACAAGTTTACAATGACATCAGGAAACAACTCAAGGCAAAAAGGGATAAGAGGAAACAGGATGAAAAGCGCTTGGCTGTTGTTAATCCTATGCAGAATGCCAAGAGGAAACTGAGGATTGCAGAGAAGCATCGGGCCAACAAGAAAAGGAAGATGATGACAATGAAAATGGGGAGATGGGCACATCATTCCAAGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRIM

Protein Analysis

2627

Amino Acids

297.23

Weight (kDa)

7.88

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UTP20_N PF07539 883 - 1495 3.5e-100 U3 small nucleolar RNA-associated protein 20, N-terminal
UTP20 PF20416 1720 - 1936 3.1e-65 U3 small nucleolar RNA-associated protein 20 domain
RYDR_ITPR PF01365 2149 - 2226 7.4e-06 RIH domain
UTP20_C PF23099 2517 - 2611 1.7e-11 Small subunit processome component 20 homolog, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 5672, 7100
AasI GACNNNNNNGTC 1 cut(s) 662
AatII GACGTC 1 cut(s) 7648
AccB1I GGYRCC 1 cut(s) 4440
AccB7I CCANNNNNTGG 1 cut(s) 6676
AccI GTMKAC 3 cut(s) 414, 1587, 7648
AccII CGCG 1 cut(s) 854
AccIII TCCGGA 3 cut(s) 1891, 2979, 6397
AclI AACGTT 1 cut(s) 2440
AcoI YGGCCR 2 cut(s) 2392, 3640
AcuI CTGAAG 9 cut(s) 1134, 1326, 2078, 2223, 2702, 2790, 3792, 4706, 6386
AcvI CACGTG 1 cut(s) 3302
AcyI GRCGYC 3 cut(s) 55, 239, 7645
AdeI CACNNNGTG 1 cut(s) 7212
AfeI AGCGCT 2 cut(s) 3885, 7748
AfiI CCNNNNNNNGG 8 cut(s) 152, 762, 2979, 3237, 4121, 5468, 6676, 7462
AflII CTTAAG 1 cut(s) 2699
AflIII ACRYGT 7 cut(s) 1807, 2653, 3262, 3301, 4413, 6634, 6993
AgeI ACCGGT 1 cut(s) 2253
AjiI CACGTC 1 cut(s) 3762
AjnI CCWGG 7 cut(s) 151, 485, 1439, 3952, 4266, 5218, 6139
AjuI GAANNNNNNNTTGG 4 cut(s) 3264, 3296, 7065, 7097
AleI CACNNNNGTG 3 cut(s) 5110, 6576, 6994
AloI GAACNNNNNNTCC 2 cut(s) 3324, 3356
Alw21I GWGCWC 7 cut(s) 3042, 3158, 4063, 4326, 6180, 6573, 7224
Alw44I GTGCAC 1 cut(s) 7220
AlwNI CAGNNNCTG 5 cut(s) 1826, 2557, 3770, 6484, 6823
Ama87I CYCGRG 1 cut(s) 369
Aor13HI TCCGGA 3 cut(s) 1891, 2979, 6397
Aor51HI AGCGCT 2 cut(s) 3885, 7748
AoxI GGCC 8 cut(s) 24, 366, 2179, 2392, 3640, 5800, 5911, 7812
ApaLI GTGCAC 1 cut(s) 7220
ArsI GACNNNNNNTTYG 8 cut(s) 96, 128, 244, 276, 5693, 5725, 6329, 6361
AseI ATTAAT 1 cut(s) 596
AsiGI ACCGGT 1 cut(s) 2253
Asp700I GAANNNNTTC 6 cut(s) 2334, 3180, 3206, 3276, 6459, 6929
AspLEI GCGC 3 cut(s) 3886, 4581, 7749
AspS9I GGNCC 7 cut(s) 247, 367, 1601, 2179, 3308, 6337, 7812
AsuC2I CCSGG 2 cut(s) 170, 4018
AsuHPI GGTGA 8 cut(s) 1012, 1419, 3610, 4942, 5655, 5852, 6821, 7250
AsuII TTCGAA 4 cut(s) 291, 906, 3912, 7500
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 4 cut(s) 247, 1601, 3308, 6337
AxyI CCTNAGG 1 cut(s) 5908
BaeGI GKGCMC 3 cut(s) 2949, 7224, 7861
BaeI ACNNNNGTAYC 4 cut(s) 3857, 3890, 5132, 5165
BalI TGGCCA 2 cut(s) 2394, 3642
BamHI GGATCC 2 cut(s) 1443, 6037
BanI GGYRCC 1 cut(s) 4440
BanII GRGCYC 3 cut(s) 1216, 3158, 4063
BarI GAAGNNNNNNTAC 2 cut(s) 2675, 2707
BauI CACGAG 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 3302
BbsI GAAGAC 5 cut(s) 61, 106, 2490, 2954, 3849
Bbv12I GWGCWC 7 cut(s) 3042, 3158, 4063, 4326, 6180, 6573, 7224
BceAI ACGGC 4 cut(s) 11, 219, 226, 3495
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 7 cut(s) 153, 487, 1441, 3954, 4268, 5220, 6141
BciVI GTATCC 2 cut(s) 4210, 5306
BclI TGATCA 2 cut(s) 2383, 5770
BcnI CCSGG 2 cut(s) 170, 4018
BfoI RGCGCY 2 cut(s) 3887, 7750
BfrI CTTAAG 1 cut(s) 2699
BfuI GTATCC 2 cut(s) 4210, 5306
BglI GCCNNNNNGGC 1 cut(s) 1704
BglII AGATCT 4 cut(s) 373, 474, 3506, 5494
BlpI GCTNAGC 1 cut(s) 1145
BmcAI AGTACT 2 cut(s) 3361, 4119
Bme1390I CCNGG 9 cut(s) 153, 170, 487, 1441, 3954, 4018, 4268, 5220, 6141
Bme18I GGWCC 4 cut(s) 247, 1601, 3308, 6337
BmeT110I CYCGRG 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 3762
BmgT120I GGNCC 7 cut(s) 247, 367, 1601, 2179, 3308, 6337, 7812
BmrFI CCNGG 9 cut(s) 153, 170, 487, 1441, 3954, 4018, 4268, 5220, 6141
BmrI ACTGGG 1 cut(s) 1867
BmuI ACTGGG 1 cut(s) 1867
BpiI GAAGAC 5 cut(s) 61, 106, 2490, 2954, 3849
BplI GAGNNNNNCTC 2 cut(s) 7043, 7075
BpmI CTGGAG 2 cut(s) 401, 5241
Bpu10I CCTNAGC 2 cut(s) 21, 7060
Bpu1102I GCTNAGC 1 cut(s) 1145
Bpu14I TTCGAA 4 cut(s) 291, 906, 3912, 7500
BpuEI CTTGAG 7 cut(s) 356, 2998, 4047, 4456, 6803, 7418, 7694
BpuMI CCSGG 2 cut(s) 170, 4018
Bsa29I ATCGAT 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 3302
BsaBI GATNNNNATC 5 cut(s) 2240, 3423, 3511, 4731, 7389
BsaHI GRCGYC 3 cut(s) 55, 239, 7645
BsaI GGTCTC 1 cut(s) 275
BsaWI WCCGGW 4 cut(s) 1891, 2253, 2979, 6397
BsaXI ACNNNNNCTCC 2 cut(s) 5330, 5360
Bsc4I CCNNNNNNNGG 8 cut(s) 152, 762, 2979, 3237, 4121, 5468, 6676, 7462
Bse118I RCCGGY 2 cut(s) 2253, 6209
Bse21I CCTNAGG 1 cut(s) 5908
Bse3DI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
Bse8I GATNNNNATC 5 cut(s) 2240, 3423, 3511, 4731, 7389
BseAI TCCGGA 3 cut(s) 1891, 2979, 6397
BseBI CCWGG 7 cut(s) 153, 487, 1441, 3954, 4268, 5220, 6141
BseCI ATCGAT 1 cut(s) 108
BseJI GATNNNNATC 5 cut(s) 2240, 3423, 3511, 4731, 7389
BseLI CCNNNNNNNGG 8 cut(s) 152, 762, 2979, 3237, 4121, 5468, 6676, 7462
BseMI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
BseRI GAGGAG 2 cut(s) 2112, 5451
BseSI GKGCMC 3 cut(s) 2949, 7224, 7861
BsgI GTGCAG 5 cut(s) 621, 1148, 5178, 6852, 7269
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 8 cut(s) 26, 368, 2181, 2394, 3642, 5802, 5913, 7814
BshNI GGYRCC 1 cut(s) 4440
BshTI ACCGGT 1 cut(s) 2253
BshVI ATCGAT 1 cut(s) 108
BsiHKAI GWGCWC 7 cut(s) 3042, 3158, 4063, 4326, 6180, 6573, 7224
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 8 cut(s) 51, 169, 1892, 2254, 2980, 4018, 6210, 6398
BslFI GGGAC 8 cut(s) 19, 185, 3294, 3716, 4645, 6350, 7248, 7609
BslI CCNNNNNNNGG 8 cut(s) 152, 762, 2979, 3237, 4121, 5468, 6676, 7462
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 8 cut(s) 19, 185, 3294, 3716, 4645, 6350, 7248, 7609
BsmI GAATGC 9 cut(s) 914, 1086, 1149, 4156, 4282, 4527, 4572, 7202, 7780
BsnI GGCC 8 cut(s) 26, 368, 2181, 2394, 3642, 5802, 5913, 7814
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 369
Bsp119I TTCGAA 4 cut(s) 291, 906, 3912, 7500
Bsp13I TCCGGA 3 cut(s) 1891, 2979, 6397
Bsp1407I TGTACA 5 cut(s) 523, 2691, 5794, 6016, 7678
Bsp1720I GCTNAGC 1 cut(s) 1145
Bsp19I CCATGG 2 cut(s) 6875, 6888
BspANI GGCC 8 cut(s) 26, 368, 2181, 2394, 3642, 5802, 5913, 7814
BspDI ATCGAT 1 cut(s) 108
BspEI TCCGGA 3 cut(s) 1891, 2979, 6397
BspFNI CGCG 1 cut(s) 854
BspHI TCATGA 2 cut(s) 1320, 1531
BspQI GCTCTTC 1 cut(s) 3063
BspT104I TTCGAA 4 cut(s) 291, 906, 3912, 7500
BspT107I GGYRCC 1 cut(s) 4440
BspTI CTTAAG 1 cut(s) 2699
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 7 cut(s) 254, 1214, 2360, 4457, 4552, 4800, 5916
BsrFI RCCGGY 2 cut(s) 2253, 6209
BsrGI TGTACA 5 cut(s) 523, 2691, 5794, 6016, 7678
BssAI RCCGGY 2 cut(s) 2253, 6209
BssNI GRCGYC 3 cut(s) 55, 239, 7645
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 6 cut(s) 404, 885, 3436, 4702, 6875, 6888
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 7 cut(s) 153, 487, 1441, 3954, 4268, 5220, 6141
Bst6I CTCTTC 6 cut(s) 16, 3063, 3665, 3914, 4619, 4725
BstACI GRCGYC 3 cut(s) 55, 239, 7645
BstAFI CTTAAG 1 cut(s) 2699
BstAUI TGTACA 5 cut(s) 523, 2691, 5794, 6016, 7678
BstBAI YACGTR 1 cut(s) 3302
BstBI TTCGAA 4 cut(s) 291, 906, 3912, 7500
BstC8I GCNNGC 6 cut(s) 968, 1672, 6386, 7145, 7415, 7538
BstDSI CCRYGG 2 cut(s) 6875, 6888
BstENI CCTNNNNNAGG 2 cut(s) 150, 760
BstFNI CGCG 1 cut(s) 854
BstH2I RGCGCY 2 cut(s) 3887, 7750
BstHHI GCGC 3 cut(s) 3886, 4581, 7749
BstNI CCWGG 7 cut(s) 153, 487, 1441, 3954, 4268, 5220, 6141
BstNSI RCATGY 8 cut(s) 1811, 2999, 3266, 4417, 5414, 6638, 6997, 7372
BstSCI CCNGG 9 cut(s) 151, 168, 485, 1439, 3952, 4016, 4266, 5218, 6139
BstSLI GKGCMC 3 cut(s) 2949, 7224, 7861
BstUI CGCG 1 cut(s) 854
BstV2I GAAGAC 5 cut(s) 61, 106, 2490, 2954, 3849
BstX2I RGATCY 9 cut(s) 373, 474, 1443, 2612, 3392, 3506, 3580, 5494, 6037
BstXI CCANNNNNNTGG 1 cut(s) 6996
BstYI RGATCY 9 cut(s) 373, 474, 1443, 2612, 3392, 3506, 3580, 5494, 6037
Bsu15I ATCGAT 1 cut(s) 108
Bsu36I CCTNAGG 1 cut(s) 5908
BsuI GTATCC 2 cut(s) 4210, 5306
BsuRI GGCC 8 cut(s) 26, 368, 2181, 2394, 3642, 5802, 5913, 7814
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 6875, 6888
BtgZI GCGATG 5 cut(s) 623, 1871, 2031, 3011, 5243
BtrI CACGTC 1 cut(s) 3762
BtsI GCAGTG 4 cut(s) 977, 3042, 3459, 6180
Cac8I GCNNGC 6 cut(s) 968, 1672, 6386, 7145, 7415, 7538
CaiI CAGNNNCTG 5 cut(s) 1826, 2557, 3770, 6484, 6823
CciI TCATGA 2 cut(s) 1320, 1531
CfoI GCGC 3 cut(s) 3886, 4581, 7749
Cfr10I RCCGGY 2 cut(s) 2253, 6209
Cfr13I GGNCC 7 cut(s) 247, 367, 1601, 2179, 3308, 6337, 7812
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 3 cut(s) 63, 67, 247
CspAI ACCGGT 1 cut(s) 2253
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
DraI TTTAAA 6 cut(s) 1491, 1879, 1926, 3979, 4602, 5391
DraIII CACNNNGTG 1 cut(s) 7212
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 2 cut(s) 2392, 3640
Eam1104I CTCTTC 6 cut(s) 16, 3063, 3665, 3914, 4619, 4725
EarI CTCTTC 6 cut(s) 16, 3063, 3665, 3914, 4619, 4725
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 3156, 4061
Eco130I CCWWGG 6 cut(s) 404, 885, 3436, 4702, 6875, 6888
Eco24I GRGCYC 3 cut(s) 1216, 3158, 4063
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 3474
Eco47I GGWCC 4 cut(s) 247, 1601, 3308, 6337
Eco47III AGCGCT 2 cut(s) 3885, 7748
Eco53kI GAGCTC 2 cut(s) 3156, 4061
Eco57I CTGAAG 9 cut(s) 1134, 1326, 2078, 2223, 2702, 2790, 3792, 4706, 6386
Eco72I CACGTG 1 cut(s) 3302
Eco81I CCTNAGG 1 cut(s) 5908
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 2 cut(s) 3156, 4061
EcoNI CCTNNNNNAGG 2 cut(s) 150, 760
EcoO109I RGGNCCY 1 cut(s) 6337
EcoRI GAATTC 2 cut(s) 3572, 6070
EcoRII CCWGG 7 cut(s) 151, 485, 1439, 3952, 4266, 5218, 6139
EcoRV GATATC 1 cut(s) 3474
EcoT14I CCWWGG 6 cut(s) 404, 885, 3436, 4702, 6875, 6888
EcoT22I ATGCAT 3 cut(s) 3298, 4009, 4384
EcoT38I GRGCYC 3 cut(s) 1216, 3158, 4063
ErhI CCWWGG 6 cut(s) 404, 885, 3436, 4702, 6875, 6888
Esp3I CGTCTC 1 cut(s) 85
FaqI GGGAC 8 cut(s) 19, 185, 3294, 3716, 4645, 6350, 7248, 7609
FauI CCCGC 1 cut(s) 6252
FauNDI CATATG 1 cut(s) 4608
FbaI TGATCA 2 cut(s) 2383, 5770
FblI GTMKAC 3 cut(s) 414, 1587, 7648
FriOI GRGCYC 3 cut(s) 1216, 3158, 4063
GlaI GCGC 3 cut(s) 3885, 4580, 7748
GsuI CTGGAG 2 cut(s) 401, 5241
HaeII RGCGCY 2 cut(s) 3887, 7750
HaeIII GGCC 8 cut(s) 26, 368, 2181, 2394, 3642, 5802, 5913, 7814
HapII CCGG 8 cut(s) 51, 169, 1892, 2254, 2980, 4018, 6210, 6398
HgaI GACGC 3 cut(s) 63, 67, 247
HhaI GCGC 3 cut(s) 3886, 4581, 7749
Hin1I GRCGYC 3 cut(s) 55, 239, 7645
Hin6I GCGC 3 cut(s) 3884, 4579, 7747
HinP1I GCGC 3 cut(s) 3884, 4579, 7747
HincII GTYRAC 6 cut(s) 415, 1185, 1306, 2118, 5179, 6246
HindII GTYRAC 6 cut(s) 415, 1185, 1306, 2118, 5179, 6246
HindIII AAGCTT 8 cut(s) 530, 1240, 1405, 2205, 4446, 5024, 5654, 7308
HpaI GTTAAC 3 cut(s) 1306, 5179, 6246
HpaII CCGG 8 cut(s) 51, 169, 1892, 2254, 2980, 4018, 6210, 6398
HphI GGTGA 8 cut(s) 1012, 1419, 3610, 4942, 5655, 5852, 6821, 7250
Hpy99I CGWCG 1 cut(s) 5880
Hsp92I GRCGYC 3 cut(s) 55, 239, 7645
HspAI GCGC 3 cut(s) 3884, 4579, 7747
KflI GGGWCCC 1 cut(s) 6337
Kpn2I TCCGGA 3 cut(s) 1891, 2979, 6397
Ksp22I TGATCA 2 cut(s) 2383, 5770
KspAI GTTAAC 3 cut(s) 1306, 5179, 6246
LguI GCTCTTC 1 cut(s) 3063
MfeI CAATTG 3 cut(s) 2840, 5079, 6372
MflI RGATCY 9 cut(s) 373, 474, 1443, 2612, 3392, 3506, 3580, 5494, 6037
MlsI TGGCCA 2 cut(s) 2394, 3642
MluNI TGGCCA 2 cut(s) 2394, 3642
MmeI TCCRAC 5 cut(s) 2439, 5328, 5786, 5872, 6015
Mox20I TGGCCA 2 cut(s) 2394, 3642
Mph1103I ATGCAT 3 cut(s) 3298, 4009, 4384
MroI TCCGGA 3 cut(s) 1891, 2979, 6397
MroXI GAANNNNTTC 6 cut(s) 2334, 3180, 3206, 3276, 6459, 6929
MscI TGGCCA 2 cut(s) 2394, 3642
MslI CAYNNNNRTG 7 cut(s) 1091, 4928, 5110, 6106, 6576, 6887, 6994
Msp20I TGGCCA 2 cut(s) 2394, 3642
MspA1I CMGCKG 4 cut(s) 970, 2859, 4637, 5744
MspCI CTTAAG 1 cut(s) 2699
MspI CCGG 8 cut(s) 51, 169, 1892, 2254, 2980, 4018, 6210, 6398
MspR9I CCNGG 9 cut(s) 153, 170, 487, 1441, 3954, 4018, 4268, 5220, 6141
MunI CAATTG 3 cut(s) 2840, 5079, 6372
Mva1269I GAATGC 9 cut(s) 914, 1086, 1149, 4156, 4282, 4527, 4572, 7202, 7780
MvaI CCWGG 7 cut(s) 153, 487, 1441, 3954, 4268, 5220, 6141
MvnI CGCG 1 cut(s) 854
NciI CCSGG 2 cut(s) 170, 4018
NcoI CCATGG 2 cut(s) 6875, 6888
NdeI CATATG 1 cut(s) 4608
NmeAIII GCCGAG 1 cut(s) 5563
NmuCI GTSAC 7 cut(s) 937, 975, 3757, 4127, 4816, 6464, 7373
NsiI ATGCAT 3 cut(s) 3298, 4009, 4384
NspI RCATGY 8 cut(s) 1811, 2999, 3266, 4417, 5414, 6638, 6997, 7372
NspV TTCGAA 4 cut(s) 291, 906, 3912, 7500
OliI CACNNNNGTG 3 cut(s) 5110, 6576, 6994
PagI TCATGA 2 cut(s) 1320, 1531
PasI CCCWGGG 1 cut(s) 3953
PciI ACATGT 5 cut(s) 1807, 3262, 4413, 6634, 6993
PciSI GCTCTTC 1 cut(s) 3063
PctI GAATGC 9 cut(s) 914, 1086, 1149, 4156, 4282, 4527, 4572, 7202, 7780
PdmI GAANNNNTTC 6 cut(s) 2334, 3180, 3206, 3276, 6459, 6929
PflFI GACNNNGTC 1 cut(s) 5874
PflMI CCANNNNNTGG 1 cut(s) 6676
PfoI TCCNGGA 3 cut(s) 168, 1439, 4266
PinAI ACCGGT 1 cut(s) 2253
PmaCI CACGTG 1 cut(s) 3302
PmlI CACGTG 1 cut(s) 3302
Ppu21I YACGTR 1 cut(s) 3302
PpuMI RGGWCCY 1 cut(s) 6337
PscI ACATGT 5 cut(s) 1807, 3262, 4413, 6634, 6993
PshBI ATTAAT 1 cut(s) 596
PsiI TTATAA 2 cut(s) 5672, 7100
Psp124BI GAGCTC 2 cut(s) 3158, 4063
Psp1406I AACGTT 1 cut(s) 2440
Psp5II RGGWCCY 1 cut(s) 6337
Psp6I CCWGG 7 cut(s) 151, 485, 1439, 3952, 4266, 5218, 6139
PspCI CACGTG 1 cut(s) 3302
PspGI CCWGG 7 cut(s) 151, 485, 1439, 3952, 4266, 5218, 6139
PspPI GGNCC 7 cut(s) 247, 367, 1601, 2179, 3308, 6337, 7812
PspPPI RGGWCCY 1 cut(s) 6337
PsrI GAACNNNNNNTAC 2 cut(s) 3774, 3806
PstNI CAGNNNCTG 5 cut(s) 1826, 2557, 3770, 6484, 6823
PsuI RGATCY 9 cut(s) 373, 474, 1443, 2612, 3392, 3506, 3580, 5494, 6037
PsyI GACNNNGTC 1 cut(s) 5874
PvuII CAGCTG 4 cut(s) 970, 2859, 4637, 5744
RseI CAYNNNNRTG 7 cut(s) 1091, 4928, 5110, 6106, 6576, 6887, 6994
SacI GAGCTC 2 cut(s) 3158, 4063
SalI GTCGAC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 3063
Sau96I GGNCC 7 cut(s) 247, 367, 1601, 2179, 3308, 6337, 7812
ScaI AGTACT 2 cut(s) 3361, 4119
ScrFI CCNGG 9 cut(s) 153, 170, 487, 1441, 3954, 4018, 4268, 5220, 6141
SfuI TTCGAA 4 cut(s) 291, 906, 3912, 7500
SinI GGWCC 4 cut(s) 247, 1601, 3308, 6337
SmiMI CAYNNNNRTG 7 cut(s) 1091, 4928, 5110, 6106, 6576, 6887, 6994
SmlI CTYRAG 8 cut(s) 335, 2699, 3013, 4062, 4435, 6782, 7433, 7709
SmoI CTYRAG 8 cut(s) 335, 2699, 3013, 4062, 4435, 6782, 7433, 7709
SspI AATATT 7 cut(s) 1666, 1989, 3223, 3984, 4144, 6024, 7405
SstI GAGCTC 2 cut(s) 3158, 4063
StyD4I CCNGG 9 cut(s) 151, 168, 485, 1439, 3952, 4016, 4266, 5218, 6139
StyI CCWWGG 6 cut(s) 404, 885, 3436, 4702, 6875, 6888
TaqII GACCGA 1 cut(s) 7311
TauI GCSGC 5 cut(s) 60, 63, 5038, 5916, 6731
TseFI GTSAC 7 cut(s) 937, 975, 3757, 4127, 4816, 6464, 7373
Tsp45I GTSAC 7 cut(s) 937, 975, 3757, 4127, 4816, 6464, 7373
TspGWI ACGGA 5 cut(s) 2948, 4231, 4307, 5288, 7033
Tth111I GACNNNGTC 1 cut(s) 5874
Van91I CCANNNNNTGG 1 cut(s) 6676
Vha464I CTTAAG 1 cut(s) 2699
VneI GTGCAC 1 cut(s) 7220
VpaK11BI GGWCC 4 cut(s) 247, 1601, 3308, 6337
VspI ATTAAT 1 cut(s) 596
XagI CCTNNNNNAGG 2 cut(s) 150, 760
XbaI TCTAGA 5 cut(s) 305, 773, 2165, 3683, 4183
XceI RCATGY 8 cut(s) 1811, 2999, 3266, 4417, 5414, 6638, 6997, 7372
XmiI GTMKAC 3 cut(s) 414, 1587, 7648
XmnI GAANNNNTTC 6 cut(s) 2334, 3180, 3206, 3276, 6459, 6929
ZraI GACGTC 1 cut(s) 7646
ZrmI AGTACT 2 cut(s) 3361, 4119
Zsp2I ATGCAT 3 cut(s) 3298, 4009, 4384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.