Rroxscaffold_2G00107570

Small subunit processome component 20 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005459
Physical Location & Seq
Reverse (-)
31519454 .. 31535972
16519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107570.1

Sequence Viewer

Length: 7980 bp
ATGGCAACCTCTTCACAAGCTCAGGCCGTCAAGTCCCTCAACAAATCCGCCGGACGCCGCCGCTTTGTCTTCAAGAGCGTCTCTGAGAGACTAGAAGAAGTCGAAATCGATGTCTTCCGAAGCCTCGATAAGCTAAAGGACGAGCCTTCCCCAGGCTCCACGTTTTTCCGGGACTGCCTCGTAGAATGGAGGGAATTGAATACCGCTGAGGATTTCATCTCATTCCACGAGCAGATGACGCCGTTGGTCCAAACATTGCCTTTGATATTGTTGCACAAGGAGACCATTTTCGAAGCATTGGTTTCTAGATTGCAAATCAGTGCAAGGTTGATTGCAGCTCTGTCCCGAGATCTCTTGGAGGACTTTATCCTCTTCTTGCCAAGGATTGTCGACTCTCTAGTGTCTCTTTTAGATAGTGGTGCTGATAGGGAGCCTGAGATCGTGGAGCAGATCTTTACATCCTGGTCGTGCATTATGAGGGATTTGCAGAAATATCTTGTGCACAAGCTTGTATATATGCTAGAGGTTACTGCAAAGTTAAGATATTATCCAAAGAATTATGTCCAAGAATTAATGGCACAGGCGATGGGATTCTTGCTGAGAACGAGAACTGCACCTTTTGAGCAGCTTGACAAAGGTGTCAGAAAGATCATGCTTGATGTTGTGGAGGAATCAACACCTTTCAGAAAATATGGAGTCAGTGCTTTGCTATATTATGCCATGACAGGAACCTCAACAAGGTTCCATTCTAGAGCCAAGCAAGTGTTACTTTTATTGATGGACAACTCAATACTTGGTTCAGCCACTGTTATTGAAGTCTTAATTTCTGCGTTACAGAGATTGTGTGATGATTTGGACTCCAAGGAGTTAAACTTAATGTTCGAATGCTTATATCAGGAAATAAAGGGCTGTGTGACTAATGGAGGTGTACTGCGTTTAAGCCGGCTGTTGTCACTGCTTGTGTCTACTGTTCAGGTGAAGAATGGGAAAGCGGTTTCTGATTACAAACAAATGCTTGAAATTGTGGGGGTGCTTGTGCGGACATATATCATACCCTCTGGCATTCAGATGGGAGAGGAACATTTATCTGAAGTCGTTGATAAGATTTTTCAGTTAATGCTCAGCATTCTTAGTGGACTGCACACTTATAATGATTTGTCAACCATCTCTGGCTGTTCGTTGCAATGGGCTCCTGTATTTGATTTACAGAAGTCAAGCTTGTTGGGGTTTATTCAACAACTGCTACAAAAGGATATTTGTATAGTAGATATTTTCCGAGTTAACATTTTAAGAGTCATGAATGTTTTAATAGAAACTTCAGAAGAAGATGTTATATATCTGTTAGTCATCTTCTGTGAAAGGCTGCAAAGGGGAGTGCAAAGCTTTAAGTTACTAGATGGATCACCTGAACTGTCCAGGATCCAATGTTTTCTGAGTGGCACGGTCAGTAAATGGGTTGGGGTTTTAAAGGGTGTTCAGAATGGGGATTTAGCATCTACTTCAATTCATGAAGCTGACTTGGCCCTGCTGTGGGGAATCATTAACTGCTTTCCGCAAATAGTAGACTCCCAAGAAGGTCCATCCTTGTTACTTGATTTGACAGATGCAATCGATCAACTCCTGATGATTGAAGATGGGAATATTGCAGGCTTTCCTAAACACACTTGGCAAAGCCTAATTGGCACTTCCTTAAATTCCTATTACAAATTGACTTGCGGTAAAAATTTGGAGCCAGAAACAAGCAGATTTTTAGATCTTGGAAAAAGACACAAATCATGTTCATATGTGTTGGTTGCTGTTGCTGATTTTTTGGACTCTTTGTATGGGTCTGCGATGGATGGCGACACCCAGTTTACAATATATCATCCAGAACTTAGTGCATATATGGCTATGGATGCTTTAAAGATGTTTGCTGACAATTTGTGCCACTCAGACAGAGGGATTCGTGCTTCAACTCTTAGAATATTATGCCACTTTGAAACTTTAAGTTGCGATGAGCCAGTTCTGAAAAAGATGAAAACTGAACTTTCTCCTACTTCTCATGTCGATAACAAAGACTTTAATGTTCTTCAGCTTCTTCTGTCAATCGAGTCAACTCCTCTTTCAATTTCTACCAGCAGAAAAGTTACTCTATTAATTTCTAGAATACAGATGGGCCTATCTGCTGGAAAAATATCTGAAGCTTATCTTCCCCTTGTTGTAAATGGCATGATTGGTATCTTCCATAACCGGTTTAGTCATCTTTGGAATCCTGTATCAGAGTGCCTTGCAGTTCTGATAAGCCGAAGTAATGGACTTGTATGGGAAAATTTTCTCAACTATTTTGAGCAATGCCAGTCCTTATTTCAAGCATCTATTGATCAAGTTGGCCAAGGTGATACTGTGCTGTCCAACAAGTCAAGTGATCTGGTTGAACGTTTTAATTTGTTTGTTACCCCAACATCTGATAGTACACCAACGGCAACAGTTTTGTCTTCCTTGCTCCAATCTTTACAAAAACTTCCAATCATTGAATCCAAGTCTCATCAGATTCTGCCTTTATTTCTGAAATTTTTGGGCTATAATTGTGAAAATTTTGTAAGTGTGGGATCTTTCAATTCAAATGTTTGTAAAGGTAAAGAGTGGAAATGTGTCCTTAAAGAATGGTTAAACTTGCTGAAACTGATGTACAACCTTAAGCACTCATATCAGAATCAGTTTCTTAAAGAGGTTTTGCAAAATAGGCTCTTGGATGAAAATGATGCTGAAGTACAGATGAAGGTTCTCGATTGCCTCTTAATCTGGAAAGATGATTTCCTGCTCCCATATAGTCAGCAATTGAAAAACTTGGTCAGCTTCCAAAATTTAAGAGAAGAATTAACAAGATGGAGTTTGTCCAGAGAGTCTAATCTAATTGAAGAACAACACAGAGCTTACCTTGTGCCCATTGTTATCCGTCTTCTGATTCCCAATGTCCGGAAATTGAAGAAACATGCTTCTCAGAAGCACTCAAGAGTGAATCATCGCAAGGCAGTGCTCGGTTTCATAGCTCAACTTGATGTTGAAGAGCTACCTCTTTTCTTTGCATTGTTGATAAAGCCCCTGCAAATTATTTCGATAGGAAGTGAAGGTGCTGCAAACTGGTTTTGGAGCTCATCAAATGGTTCTGTGGAAGAATTTCGAACATTGAATTTCTTGAAGTATTTCACGTTTAGCAATATTACAGCCTTGTCTTGGAAGAAAAGAAGTGCTTTTCTACATGTGATTGAAGATGTTCTTGGAGTTTTTGATGCATCACGTGTTGGTCCCTTCCTTGATTTCATAATGGGATGTGTTGTTCGGATATTAGGAAGCAGTACTTTAGGTCTTGATGTGGCAAAAGGCAAAGGATCTTCTTCCCTTACTAATTATTCTGATGCTAATCTTGCTTCCCTTGGATATGACGGGGCAGTGGATAATAATGTTTTGATATCTACGGCTGTGGGGCAGTTGAAGGATTTGAGATCTTTATCCTTGAAAATTGTGTCCTTTGTTCTGAATAAGTATGAAGATCACGACTTTAGCTGTGAATTCTGGGATCTTTTCTTTGGGTCAGTGAAGCCCTTAATTGATGGTTTCAAGCAGGAGGGATTCAGTGGCCAGAAGCCTAGTTCACTCTTCTCTTGCTTTCTTGCTATGTCTAGAAGCGAAAAATTAGTATCACTGCTGTGTAGGGAGCAAAACCTTGTCCCTGATATACTCTCAATTCTAACCGTCACGTCAGCATCTGAAGCTATTGTGGCTTGTGTTCTGAACTTTGTTGAGAACTTGTTGATTCTTGATGATGAATTGGGTGTTGAAGACAATGCTGGAAAAAGAGTTATACTTCTGTACCTTGAAGCACTAGTTGATAACTTGCATTGTCTCTTCGAAAATAATGTTGCAGCCAAGAGGAAATTGCTTAAACACTCAGGGGAGACAGAAGTGAGGATTTTTAAAATATTACCAAAGTATATAAGTGATGCATTGTCAGCCCGGAAATTCGTGGATATATTGCTCCCTGTTTTAGCAAATGGAGCTCAAGATTCAGAATTTCGATTTGAAGCTGTGCAAATCATTTGTGATATTGTTCCAGTACTAGGGAGTGACGTTACAAATAATATTTTGAATGCAGTATCTCCATTACTTATTTCTACCGATCTAGATAAGCGTTTAGTTATCTGTAATCTTCTGGACACACTTGCCAGAGCGGACCCTTCCGTTCAATTTGTGGCAAAACTTGTCCAGGACTTGAATGCAACCTCTATCACGGAAATAGATAGCCTTGATTATGATAGAGTGCTCAATGCTTATGGAAAGATCACGGTTGATATGTTCAATACCATTCGAGAGGATCATGCATTGGTCATATTGTCTCACTGTGTCTATGACATGTCATCTGATGAATCAACCTTGAGGCACCGAGCTTATGATTCATTGCTTTCATTTGTTGAATTTTCTGCCCTCGTACTTGGCAAAGTATTGAACAATGACTCTGAAATGCCTGACAAGATGTTAGCCTCTGAGGATCATTGCTGGACAAAAGTTTGCATTCAGCGCATAATAAGCAAATTTCTTTTAAAGCATATGGCTAATGCTATGAAGAGTGGGACAGCTGTTAGAGAGGAATGGGTCGAGTTACTTAGAGAAATGGTGTTAAAACTTCCAGAAGTGGCAAACCTTGGTTCACTGAAACCTCTTCAGGATGAAAATCTTGAAATAGATTTTTTCAAGAATATCCTTCATATACAGAAACATAGGAGAGCAAGGGCAATGAAACGCTTTAAGAATTTTGTCACAAACAGCTATATGCCAGAGGGCATCACAAAGAAACTGTTTGTTCCCTTCTTCTTTACGATCTTGATGGAGGAAGAAAAAGGAGAGCATATAAAAAATATGTGCATAGAGGTGATTGCTTCAATTTCAAGCAGGGAGTGGAGTTCATCCTACTTGTTGCTGATGAGATGCTTCAATGAGATTTCCAAAAATCCTCTGAAACAGAAGCTTCTTTTGCGGCTAATTTGCTCTATCTTGCACCAGTTCCACTTTTCAGAGACAATTGATACTGCCTTTGTAAATGAAACACAAACATGCCTTCATAAAACTGTGCTTCCTAAGATACAAAAGTTACTCAGCGATTCTGAAAAGGTCAGTGTTAACATCAGTCTTGCTGCACTGAGAGTATTAAAGTTGCTACCTGGAGATGTAATGGACTCGCAGCTTCCTAGCATTATTCATCGCATTTCAAACTTTTTGAAGAATAGATTAGAAAGCATCCGTGATGAAGCTAGGAGTGCTTTGGCTGATTGTTTGAAGGAGCTTGGGTTGGAATACTTGCATTTTATAGTCAAAGTTTTGCGAAGCACTTTAAAACGTGGATTTGAGTTGCATGTCTTGGGATATACTCTAAACTTTATCTTATCAAAGTTTCTTGTTACTCCTATCAGCGGGAAACTGGACTACTGTTTGGAAGATCTGCTTTCTATTGCACAGAATGATATTCTTGGAGATGTTGCCGAGGAAAAAGAGGTTGAGAAGATTGCTTCCAAAATGAAAGAAACAAAGAAGCAAAAGTCTTTTGAAACTCTGAAATTGATTGCTCAAAGCATAACATTCAAAAGCCATGCCTTGAAGCTTCTATCACCTGTTATAACTCAATTTGAGAAACATCTTACACCAAAAACAAAGTCAAAATTGGAAAGTATGTTGAATCACATAGCAGCTGGTATTGAGTGTAATCCAACTGTTGATCAGACTGACCTTTTTATATTTGTACATGGTCTGATTGAAGATGGAATAAAAGAAGAAAATGGTAAGGGTGAGACTTCGTTCATTACGGGGGTAAATGGACATCGTCGAAGGGATGTGGTTGGAAAAGTTGATTCCTCAGGCCGCATTGCAGGTGCTAAATCAGTGTGTTCACATCTTATTTCTGTGTTTGCTCTTGGGATGTTGCAGAAACGCATAAAGAATTTGAAAGTGAGAAAAAATGATGTACAAATATTGTCAATGTTGGATCCTTTTGTCACACTGTTAGGGAAGTGCTTGAATTCCAAGTATGAAGATGTCTTATCTGCAACACTTAGATGCCTAACTTCGTTGGTCAGGTTGCATTTACCTGCCATTGAAGATCAAGCAGATAGTATAAAAGCTGTGCTCTTTGAGATTGCTCATAGTTGGTTAAATACCGGCAGTTCTCTAATGGAGTCATGTCTGAGGCTGTTAACTGTACTTTTGCGGGGCAACAAAATTACTCTTTCCTCCGATCATCTACATCTATTGATTCAGCTTCCAGTGTTCGTTGATATTGAAAGGGACCCCTCATTTGTTGCTCTTTCACTTCTGAAGGCAATTGTTAAACGCAAGCTAGTTGTTCCGGAGATATATGATCTTGTTACTAGAGTCTCAGAATTGATGGTAACAAGTCAAGTAGAACCAATTCGTCACAAATGTAGTCAGATTCTGTCTCACTTCTTAAATGATTATCCTCTTTCAGAAAAACGATTGCAACAACATTTGGATTTTTTGCTGTCTAATCTGAGGTATGAGCACTCTAGTGGAAGAAAAACTGTGCTTGAAATGCTCCATGCAGTTATTGTTAAAAATCCACGAAATGTTGTAGATGAGCAATCACAGACGTTTTTTGTCCATTTGGTGGTTTGCTTGGCTAATGATCGGGATAATGAAGTTCGTTTGATGGCTGGTGCGGCTATAAAACGTCTCACTGGTTGTGTAAGCCCACGCTCACTTCTCTCCATTCTTGAGTACAGTCTATCTTGGTATTTGGGTGAGAAGCAGCAACTGTGGGGTGCAGCAGCACAGGTTTTGGGGTTGCTGGTTGAAGTTGAAGTCATGAAGAAACGATTCCACAAGCATATCAACAGTGTATTAAAAGTGACTAAAAGCATCTTGCAGTCTGCCATCGATGCTGTCACTCATGATTCTCCTCATGAAACTGCCATTCCTTTCTGGAAAGAGGCATTTTATTCATTGGTTATGCTGGAAAAAATTCTGAATCAGTTCCATGATTTGTGTTTTGATAGGGATCTTGAGGATATATGGGAAGCAATTTGTGAGTTACTCCTGCATCCACACCTGTGGTTACGTTGTATTTCAAGTCGTCTTATAGCCTTCTACTTTGCTTCCGTAAAAGAGTCTTGCTCAGGAGATCATGAAAATCCATTTGGCACTTACTACCTTATAAAACCTAATAAACTTTTCATGATAGCTGCATATATCTGCTGCCAACTGAAGACACAACTCATTGATGATGCAGCCAACAAACTGATTACACAAAATCTTGCATTCACTGTGTGTGGTGTGCACTCTTTGATGGGACAAACAGAGTGTGCAGATTCTCACCAGTTTTGGTTTAACCTTGAACAGCATGAGCAAGACCGATTTCTTAAAGCTTTTGAGTTGCTCGAAGCTAGAAAAGGAAAGACCACGTTTTTATCTCTTACCTCTGGCATGTGTGACACAAATGATGAAAATCCCTCTAAGAATATTCGATGCTTGCTTGTATCTAACTTGCTCAAGAAAATGGGAAAGATTGCCCTTCAAATGGAGGCTGTCCAGATGAAAATTGTCTTTGATTGTTTCGAAAAAATTTTGTCTGAAATGAGTCGGGAGGATTGCCTGCTTTATGCTTATGAAATGTTGCAGCCCTTGTATAAAGTTTGCGAAGGATTTTCTGGGACTGTGATCCCTGAAAATATGAAGCAATTAGCAGAAGAAGTTTCTGGACGTCTACGCAGTAAACTAGGCAGCCAAAATTATGTACAAGTTTACAATGACATCAGGAAACAACTCAAGGCAAAAAGGGATAAGAGGAAACAGGATGAAAAGCGCTTGGCTGTTGTTAATCCTATGCAGAATGCCAAGAGGAAACTGAGGATTGCAGAGAAGCATCGGGCCAACAAGAAAAGGAAGATGATGACAATGAAAATGGGGAGATGGGCAAATCATTCCAAGTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DRIM

Protein Analysis

2659

Amino Acids

301.25

Weight (kDa)

7.49

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UTP20_N PF07539 878 - 1487 2.9e-99 U3 small nucleolar RNA-associated protein 20, N-terminal
UTP20 PF20416 1712 - 1928 1e-65 U3 small nucleolar RNA-associated protein 20 domain
RYDR_ITPR PF01365 2141 - 2218 3.6e-06 RIH domain
UTP20_C PF23099 2550 - 2644 1.7e-11 Small subunit processome component 20 homolog, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1149, 5648, 7199
AarI CACCTGC 1 cut(s) 5888
AasI GACNNNNNNGTC 1 cut(s) 638
AatII GACGTC 1 cut(s) 7747
Acc36I ACCTGC 2 cut(s) 5888, 6124
AccB1I GGYRCC 1 cut(s) 4416
AccB7I CCANNNNNTGG 1 cut(s) 6652
AccBSI CCGCTC 1 cut(s) 4208
AccI GTMKAC 4 cut(s) 390, 965, 1563, 7747
AccIII TCCGGA 2 cut(s) 2955, 6373
AclI AACGTT 1 cut(s) 2416
AcoI YGGCCR 2 cut(s) 2368, 3616
AcuI CTGAAG 9 cut(s) 1110, 1302, 2054, 2199, 2766, 3768, 4682, 6362, 7268
AcvI CACGTG 1 cut(s) 3278
AcyI GRCGYC 3 cut(s) 55, 239, 7744
AdeI CACNNNGTG 1 cut(s) 7311
AfeI AGCGCT 1 cut(s) 7847
AflII CTTAAG 1 cut(s) 2675
AflIII ACRYGT 3 cut(s) 3238, 3277, 4389
AgeI ACCGGT 1 cut(s) 2229
AhlI ACTAGT 1 cut(s) 3862
AjiI CACGTC 1 cut(s) 3738
AjnI CCWGG 5 cut(s) 151, 461, 1415, 4242, 5194
AjuI GAANNNNNNNTTGG 4 cut(s) 3240, 3272, 7164, 7196
AleI CACNNNNGTG 3 cut(s) 3685, 6552, 7093
AloI GAACNNNNNNTCC 2 cut(s) 3300, 3332
Alw21I GWGCWC 8 cut(s) 504, 3018, 3134, 4039, 4302, 6156, 6549, 7323
Alw44I GTGCAC 2 cut(s) 500, 7319
AlwNI CAGNNNCTG 5 cut(s) 806, 2533, 3746, 6460, 6799
Ama87I CYCGRG 1 cut(s) 345
Aor13HI TCCGGA 2 cut(s) 2955, 6373
Aor51HI AGCGCT 1 cut(s) 7847
AoxI GGCC 7 cut(s) 24, 1521, 2155, 2368, 3616, 5887, 7911
ApaLI GTGCAC 2 cut(s) 500, 7319
ArsI GACNNNNNNTTYG 6 cut(s) 96, 128, 5669, 5701, 6305, 6337
AseI ATTAAT 2 cut(s) 572, 2135
AsiGI ACCGGT 1 cut(s) 2229
Asp700I GAANNNNTTC 8 cut(s) 2310, 3156, 3182, 3252, 6435, 6860, 7005, 7016
AspLEI GCGC 2 cut(s) 4557, 7848
AspS9I GGNCC 8 cut(s) 247, 1522, 1577, 2155, 3284, 4210, 6313, 7911
AsuC2I CCSGG 2 cut(s) 170, 3994
AsuHPI GGTGA 8 cut(s) 988, 1395, 2387, 4918, 5631, 5828, 6797, 7349
AsuII TTCGAA 5 cut(s) 291, 882, 3160, 3888, 7599
AvaI CYCGRG 1 cut(s) 345
AvaII GGWCC 5 cut(s) 247, 1577, 3284, 4210, 6313
AxyI CCTNAGG 1 cut(s) 5884
BaeGI GKGCMC 3 cut(s) 504, 2925, 7323
BaeI ACNNNNGTAYC 4 cut(s) 3833, 3866, 5108, 5141
BalI TGGCCA 2 cut(s) 2370, 3618
BamHI GGATCC 2 cut(s) 1419, 6013
BanI GGYRCC 1 cut(s) 4416
BanII GRGCYC 3 cut(s) 1192, 3134, 4039
BauI CACGAG 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 3278
BbsI GAAGAC 6 cut(s) 61, 106, 2466, 2930, 3825, 7256
Bbv12I GWGCWC 8 cut(s) 504, 3018, 3134, 4039, 4302, 6156, 6549, 7323
BbvCI CCTCAGC 1 cut(s) 207
BceAI ACGGC 4 cut(s) 11, 226, 2475, 3471
BciT130I CCWGG 5 cut(s) 153, 463, 1417, 4244, 5196
BclI TGATCA 2 cut(s) 2359, 5746
BcnI CCSGG 2 cut(s) 170, 3994
BcuI ACTAGT 1 cut(s) 3862
BfoI RGCGCY 1 cut(s) 7849
BfrI CTTAAG 1 cut(s) 2675
BfuAI ACCTGC 2 cut(s) 5888, 6124
BglI GCCNNNNNGGC 1 cut(s) 1680
BglII AGATCT 5 cut(s) 349, 450, 1753, 3482, 5470
BlpI GCTNAGC 1 cut(s) 1121
BmcAI AGTACT 2 cut(s) 3337, 4095
Bme1390I CCNGG 7 cut(s) 153, 170, 463, 1417, 3994, 4244, 5196
Bme18I GGWCC 5 cut(s) 247, 1577, 3284, 4210, 6313
BmeT110I CYCGRG 1 cut(s) 345
BmgBI CACGTC 1 cut(s) 3738
BmgT120I GGNCC 8 cut(s) 247, 1522, 1577, 2155, 3284, 4210, 6313, 7911
BmrFI CCNGG 7 cut(s) 153, 170, 463, 1417, 3994, 4244, 5196
BmrI ACTGGG 1 cut(s) 1843
BmuI ACTGGG 1 cut(s) 1843
BpiI GAAGAC 6 cut(s) 61, 106, 2466, 2930, 3825, 7256
BplI GAGNNNNNCTC 2 cut(s) 7142, 7174
BpmI CTGGAG 1 cut(s) 5217
Bpu10I CCTNAGC 3 cut(s) 21, 207, 7159
Bpu1102I GCTNAGC 1 cut(s) 1121
Bpu14I TTCGAA 5 cut(s) 291, 882, 3160, 3888, 7599
BpuEI CTTGAG 7 cut(s) 2974, 4023, 4432, 6779, 7067, 7517, 7793
BpuMI CCSGG 2 cut(s) 170, 3994
Bsa29I ATCGAT 3 cut(s) 108, 1611, 6921
BsaAI YACGTR 1 cut(s) 3278
BsaBI GATNNNNATC 6 cut(s) 2216, 3399, 3487, 4707, 7041, 7488
BsaHI GRCGYC 3 cut(s) 55, 239, 7744
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 7 cut(s) 151, 380, 861, 2371, 3412, 4678, 5514
BsaWI WCCGGW 3 cut(s) 2229, 2955, 6373
BsaXI ACNNNNNCTCC 2 cut(s) 5306, 5336
Bse118I RCCGGY 3 cut(s) 942, 2229, 6185
Bse21I CCTNAGG 1 cut(s) 5884
Bse3DI GCAATG 7 cut(s) 254, 1190, 2336, 4433, 4528, 4776, 5892
Bse8I GATNNNNATC 6 cut(s) 2216, 3399, 3487, 4707, 7041, 7488
BseAI TCCGGA 2 cut(s) 2955, 6373
BseBI CCWGG 5 cut(s) 153, 463, 1417, 4244, 5196
BseCI ATCGAT 3 cut(s) 108, 1611, 6921
BseDI CCNNGG 7 cut(s) 151, 380, 861, 2371, 3412, 4678, 5514
BseJI GATNNNNATC 6 cut(s) 2216, 3399, 3487, 4707, 7041, 7488
BseMI GCAATG 7 cut(s) 254, 1190, 2336, 4433, 4528, 4776, 5892
BseRI GAGGAG 2 cut(s) 2088, 6933
BseSI GKGCMC 3 cut(s) 504, 2925, 7323
BsgI GTGCAG 5 cut(s) 597, 1124, 5154, 6828, 7368
BshFI GGCC 7 cut(s) 26, 1523, 2157, 2370, 3618, 5889, 7913
BshNI GGYRCC 1 cut(s) 4416
BshTI ACCGGT 1 cut(s) 2229
BshVI ATCGAT 3 cut(s) 108, 1611, 6921
BsiHKAI GWGCWC 8 cut(s) 504, 3018, 3134, 4039, 4302, 6156, 6549, 7323
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 8 cut(s) 51, 169, 943, 2230, 2956, 3994, 6186, 6374
BslFI GGGAC 9 cut(s) 19, 185, 328, 3270, 3692, 4621, 6326, 7347, 7708
BsmBI CGTCTC 2 cut(s) 85, 6722
BsmFI GGGAC 9 cut(s) 19, 185, 328, 3270, 3692, 4621, 6326, 7347, 7708
BsmI GAATGC 8 cut(s) 890, 1062, 1125, 4132, 4258, 4548, 7301, 7879
BsnI GGCC 7 cut(s) 26, 1523, 2157, 2370, 3618, 5889, 7913
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 345
Bsp119I TTCGAA 5 cut(s) 291, 882, 3160, 3888, 7599
Bsp13I TCCGGA 2 cut(s) 2955, 6373
Bsp1407I TGTACA 4 cut(s) 2667, 5770, 5992, 7777
Bsp1720I GCTNAGC 1 cut(s) 1121
BspANI GGCC 7 cut(s) 26, 1523, 2157, 2370, 3618, 5889, 7913
BspDI ATCGAT 3 cut(s) 108, 1611, 6921
BspEI TCCGGA 2 cut(s) 2955, 6373
BspHI TCATGA 7 cut(s) 1296, 1507, 6849, 6934, 6946, 7168, 7218
BspMI ACCTGC 2 cut(s) 5888, 6124
BspQI GCTCTTC 1 cut(s) 3039
BspT104I TTCGAA 5 cut(s) 291, 882, 3160, 3888, 7599
BspT107I GGYRCC 1 cut(s) 4416
BspTI CTTAAG 1 cut(s) 2675
BspTNI GGTCTC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 4208
BsrDI GCAATG 7 cut(s) 254, 1190, 2336, 4433, 4528, 4776, 5892
BsrFI RCCGGY 3 cut(s) 942, 2229, 6185
BsrGI TGTACA 4 cut(s) 2667, 5770, 5992, 7777
BssAI RCCGGY 3 cut(s) 942, 2229, 6185
BssECI CCNNGG 7 cut(s) 151, 380, 861, 2371, 3412, 4678, 5514
BssNI GRCGYC 3 cut(s) 55, 239, 7744
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 5 cut(s) 380, 861, 2371, 3412, 4678
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 5 cut(s) 153, 463, 1417, 4244, 5196
Bst6I CTCTTC 7 cut(s) 16, 377, 3039, 3641, 3890, 4595, 4701
BstACI GRCGYC 3 cut(s) 55, 239, 7744
BstAFI CTTAAG 1 cut(s) 2675
BstAUI TGTACA 4 cut(s) 2667, 5770, 5992, 7777
BstBAI YACGTR 1 cut(s) 3278
BstBI TTCGAA 5 cut(s) 291, 882, 3160, 3888, 7599
BstC8I GCNNGC 5 cut(s) 944, 1648, 6362, 7514, 7637
BstENI CCTNNNNNAGG 2 cut(s) 150, 736
BstH2I RGCGCY 1 cut(s) 7849
BstHHI GCGC 2 cut(s) 4557, 7848
BstNI CCWGG 5 cut(s) 153, 463, 1417, 4244, 5196
BstNSI RCATGY 6 cut(s) 2975, 3242, 4393, 5091, 5390, 7471
BstSCI CCNGG 7 cut(s) 151, 168, 461, 1415, 3992, 4242, 5194
BstSLI GKGCMC 3 cut(s) 504, 2925, 7323
BstV2I GAAGAC 6 cut(s) 61, 106, 2466, 2930, 3825, 7256
BstXI CCANNNNNNTGG 1 cut(s) 7095
Bsu15I ATCGAT 3 cut(s) 108, 1611, 6921
Bsu36I CCTNAGG 1 cut(s) 5884
BsuRI GGCC 7 cut(s) 26, 1523, 2157, 2370, 3618, 5889, 7913
BsuTUI ATCGAT 3 cut(s) 108, 1611, 6921
BtgZI GCGATG 5 cut(s) 599, 1847, 2007, 2987, 5219
BtrI CACGTC 1 cut(s) 3738
BtsI GCAGTG 4 cut(s) 953, 3018, 3435, 3680
BveI ACCTGC 2 cut(s) 5888, 6124
Cac8I GCNNGC 5 cut(s) 944, 1648, 6362, 7514, 7637
CaiI CAGNNNCTG 5 cut(s) 806, 2533, 3746, 6460, 6799
CciI TCATGA 7 cut(s) 1296, 1507, 6849, 6934, 6946, 7168, 7218
CfoI GCGC 2 cut(s) 4557, 7848
Cfr10I RCCGGY 3 cut(s) 942, 2229, 6185
Cfr13I GGNCC 8 cut(s) 247, 1522, 1577, 2155, 3284, 4210, 6313, 7911
ClaI ATCGAT 3 cut(s) 108, 1611, 6921
CseI GACGC 3 cut(s) 63, 67, 247
CspAI ACCGGT 1 cut(s) 2229
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
DraI TTTAAA 5 cut(s) 1467, 1902, 3955, 4578, 5367
DraIII CACNNNGTG 1 cut(s) 7311
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
EaeI YGGCCR 2 cut(s) 2368, 3616
Eam1104I CTCTTC 7 cut(s) 16, 377, 3039, 3641, 3890, 4595, 4701
EarI CTCTTC 7 cut(s) 16, 377, 3039, 3641, 3890, 4595, 4701
EciI GGCGGA 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 3132, 4037
Eco130I CCWWGG 5 cut(s) 380, 861, 2371, 3412, 4678
Eco24I GRGCYC 3 cut(s) 1192, 3134, 4039
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 3450
Eco47I GGWCC 5 cut(s) 247, 1577, 3284, 4210, 6313
Eco47III AGCGCT 1 cut(s) 7847
Eco53kI GAGCTC 2 cut(s) 3132, 4037
Eco57I CTGAAG 9 cut(s) 1110, 1302, 2054, 2199, 2766, 3768, 4682, 6362, 7268
Eco72I CACGTG 1 cut(s) 3278
Eco81I CCTNAGG 1 cut(s) 5884
Eco88I CYCGRG 1 cut(s) 345
EcoICRI GAGCTC 2 cut(s) 3132, 4037
EcoNI CCTNNNNNAGG 2 cut(s) 150, 736
EcoO109I RGGNCCY 1 cut(s) 6313
EcoRI GAATTC 2 cut(s) 3548, 6046
EcoRII CCWGG 5 cut(s) 151, 461, 1415, 4242, 5194
EcoRV GATATC 1 cut(s) 3450
EcoT14I CCWWGG 5 cut(s) 380, 861, 2371, 3412, 4678
EcoT22I ATGCAT 3 cut(s) 3274, 3985, 4360
EcoT38I GRGCYC 3 cut(s) 1192, 3134, 4039
ErhI CCWWGG 5 cut(s) 380, 861, 2371, 3412, 4678
Esp3I CGTCTC 2 cut(s) 85, 6722
FaqI GGGAC 9 cut(s) 19, 185, 328, 3270, 3692, 4621, 6326, 7347, 7708
FauI CCCGC 2 cut(s) 5438, 6228
FauNDI CATATG 2 cut(s) 1783, 4584
FbaI TGATCA 2 cut(s) 2359, 5746
FblI GTMKAC 4 cut(s) 390, 965, 1563, 7747
FriOI GRGCYC 3 cut(s) 1192, 3134, 4039
GlaI GCGC 2 cut(s) 4556, 7847
GsuI CTGGAG 1 cut(s) 5217
HaeII RGCGCY 1 cut(s) 7849
HaeIII GGCC 7 cut(s) 26, 1523, 2157, 2370, 3618, 5889, 7913
HapII CCGG 8 cut(s) 51, 169, 943, 2230, 2956, 3994, 6186, 6374
HgaI GACGC 3 cut(s) 63, 67, 247
HhaI GCGC 2 cut(s) 4557, 7848
Hin1I GRCGYC 3 cut(s) 55, 239, 7744
Hin6I GCGC 2 cut(s) 4555, 7846
HinP1I GCGC 2 cut(s) 4555, 7846
HincII GTYRAC 6 cut(s) 391, 1161, 1282, 2094, 5155, 6222
HindII GTYRAC 6 cut(s) 391, 1161, 1282, 2094, 5155, 6222
HindIII AAGCTT 7 cut(s) 506, 1216, 1381, 2181, 5000, 5630, 7407
HpaI GTTAAC 3 cut(s) 1282, 5155, 6222
HpaII CCGG 8 cut(s) 51, 169, 943, 2230, 2956, 3994, 6186, 6374
HphI GGTGA 8 cut(s) 988, 1395, 2387, 4918, 5631, 5828, 6797, 7349
Hpy99I CGWCG 1 cut(s) 5856
Hsp92I GRCGYC 3 cut(s) 55, 239, 7744
HspAI GCGC 2 cut(s) 4555, 7846
KflI GGGWCCC 1 cut(s) 6313
Kpn2I TCCGGA 2 cut(s) 2955, 6373
KroI GCCGGC 1 cut(s) 942
KroNI GCCGGC 1 cut(s) 944
Ksp22I TGATCA 2 cut(s) 2359, 5746
KspAI GTTAAC 3 cut(s) 1282, 5155, 6222
LguI GCTCTTC 1 cut(s) 3039
MbiI CCGCTC 1 cut(s) 4208
MfeI CAATTG 3 cut(s) 2816, 5055, 6348
MlsI TGGCCA 2 cut(s) 2370, 3618
MluNI TGGCCA 2 cut(s) 2370, 3618
MmeI TCCRAC 5 cut(s) 2415, 5304, 5762, 5848, 5991
Mox20I TGGCCA 2 cut(s) 2370, 3618
Mph1103I ATGCAT 3 cut(s) 3274, 3985, 4360
MroI TCCGGA 2 cut(s) 2955, 6373
MroNI GCCGGC 1 cut(s) 942
MroXI GAANNNNTTC 8 cut(s) 2310, 3156, 3182, 3252, 6435, 6860, 7005, 7016
MscI TGGCCA 2 cut(s) 2370, 3618
MslI CAYNNNNRTG 7 cut(s) 1067, 3685, 4904, 5086, 6082, 6552, 7093
Msp20I TGGCCA 2 cut(s) 2370, 3618
MspA1I CMGCKG 4 cut(s) 206, 4613, 5445, 5720
MspCI CTTAAG 1 cut(s) 2675
MspI CCGG 8 cut(s) 51, 169, 943, 2230, 2956, 3994, 6186, 6374
MspR9I CCNGG 7 cut(s) 153, 170, 463, 1417, 3994, 4244, 5196
MunI CAATTG 3 cut(s) 2816, 5055, 6348
Mva1269I GAATGC 8 cut(s) 890, 1062, 1125, 4132, 4258, 4548, 7301, 7879
MvaI CCWGG 5 cut(s) 153, 463, 1417, 4244, 5196
NaeI GCCGGC 1 cut(s) 944
NciI CCSGG 2 cut(s) 170, 3994
NdeI CATATG 2 cut(s) 1783, 4584
NgoMIV GCCGGC 1 cut(s) 942
NmeAIII GCCGAG 1 cut(s) 5539
NsiI ATGCAT 3 cut(s) 3274, 3985, 4360
NspI RCATGY 6 cut(s) 2975, 3242, 4393, 5091, 5390, 7471
NspV TTCGAA 5 cut(s) 291, 882, 3160, 3888, 7599
OliI CACNNNNGTG 3 cut(s) 3685, 6552, 7093
PagI TCATGA 7 cut(s) 1296, 1507, 6849, 6934, 6946, 7168, 7218
PaqCI CACCTGC 1 cut(s) 5888
PciI ACATGT 2 cut(s) 3238, 4389
PciSI GCTCTTC 1 cut(s) 3039
PctI GAATGC 8 cut(s) 890, 1062, 1125, 4132, 4258, 4548, 7301, 7879
PdiI GCCGGC 1 cut(s) 944
PdmI GAANNNNTTC 8 cut(s) 2310, 3156, 3182, 3252, 6435, 6860, 7005, 7016
PflFI GACNNNGTC 1 cut(s) 5850
PflMI CCANNNNNTGG 1 cut(s) 6652
PfoI TCCNGGA 3 cut(s) 168, 1415, 4242
PinAI ACCGGT 1 cut(s) 2229
PmaCI CACGTG 1 cut(s) 3278
PmlI CACGTG 1 cut(s) 3278
Ppu21I YACGTR 1 cut(s) 3278
PpuMI RGGWCCY 1 cut(s) 6313
PscI ACATGT 2 cut(s) 3238, 4389
PshBI ATTAAT 2 cut(s) 572, 2135
PsiI TTATAA 3 cut(s) 1149, 5648, 7199
Psp124BI GAGCTC 2 cut(s) 3134, 4039
Psp1406I AACGTT 1 cut(s) 2416
Psp5II RGGWCCY 1 cut(s) 6313
Psp6I CCWGG 5 cut(s) 151, 461, 1415, 4242, 5194
PspCI CACGTG 1 cut(s) 3278
PspGI CCWGG 5 cut(s) 151, 461, 1415, 4242, 5194
PspPI GGNCC 8 cut(s) 247, 1522, 1577, 2155, 3284, 4210, 6313, 7911
PspPPI RGGWCCY 1 cut(s) 6313
PstNI CAGNNNCTG 5 cut(s) 806, 2533, 3746, 6460, 6799
PsyI GACNNNGTC 1 cut(s) 5850
PvuII CAGCTG 2 cut(s) 4613, 5720
RseI CAYNNNNRTG 7 cut(s) 1067, 3685, 4904, 5086, 6082, 6552, 7093
SacI GAGCTC 2 cut(s) 3134, 4039
SalI GTCGAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 3039
Sau96I GGNCC 8 cut(s) 247, 1522, 1577, 2155, 3284, 4210, 6313, 7911
ScaI AGTACT 2 cut(s) 3337, 4095
ScrFI CCNGG 7 cut(s) 153, 170, 463, 1417, 3994, 4244, 5196
SfuI TTCGAA 5 cut(s) 291, 882, 3160, 3888, 7599
SinI GGWCC 5 cut(s) 247, 1577, 3284, 4210, 6313
SmiMI CAYNNNNRTG 7 cut(s) 1067, 3685, 4904, 5086, 6082, 6552, 7093
SmlI CTYRAG 8 cut(s) 2675, 2989, 4038, 4411, 6758, 7046, 7532, 7808
SmoI CTYRAG 8 cut(s) 2675, 2989, 4038, 4411, 6758, 7046, 7532, 7808
SpeI ACTAGT 1 cut(s) 3862
SspI AATATT 7 cut(s) 1642, 1965, 3199, 3960, 4120, 6000, 7504
SstI GAGCTC 2 cut(s) 3134, 4039
StyD4I CCNGG 7 cut(s) 151, 168, 461, 1415, 3992, 4242, 5194
StyI CCWWGG 5 cut(s) 380, 861, 2371, 3412, 4678
TaqII GACCGA 1 cut(s) 7410
TauI GCSGC 5 cut(s) 60, 63, 5014, 5892, 6707
TspGWI ACGGA 5 cut(s) 2924, 4207, 4283, 5264, 7132
Tth111I GACNNNGTC 1 cut(s) 5850
Van91I CCANNNNNTGG 1 cut(s) 6652
Vha464I CTTAAG 1 cut(s) 2675
VneI GTGCAC 2 cut(s) 500, 7319
VpaK11BI GGWCC 5 cut(s) 247, 1577, 3284, 4210, 6313
VspI ATTAAT 2 cut(s) 572, 2135
XagI CCTNNNNNAGG 2 cut(s) 150, 736
XbaI TCTAGA 5 cut(s) 305, 749, 2141, 3659, 4159
XceI RCATGY 6 cut(s) 2975, 3242, 4393, 5091, 5390, 7471
XmiI GTMKAC 4 cut(s) 390, 965, 1563, 7747
XmnI GAANNNNTTC 8 cut(s) 2310, 3156, 3182, 3252, 6435, 6860, 7005, 7016
ZraI GACGTC 1 cut(s) 7745
ZrmI AGTACT 2 cut(s) 3337, 4095
Zsp2I ATGCAT 3 cut(s) 3274, 3985, 4360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.