FvH4_6g31220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015169
Physical Location & Seq
Forward (+)
24368419 .. 24369741
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31220.t2

Sequence Viewer

Length: 753 bp
ATGGCCAAGAAATTGGCGAGGGAAGAAAGAAGAAGAAGAATTGCAGAAAGAGGATTGGATCGCATGGCCCTCATAACGGGTCAGATCCGATCGCTTCCTCCCTCACCACCCCCATCACAACCAACACCTCTAATCAATGTTGATACCTGGTTCAAGGATGATAGCCTTAAAGGTTCGACATTACAGACACAAGAAGTTAGCAATGAACTTTCTGCGCAAAACAACATTGAAACTAAGCAATACGAAGGTGTGGATGGAAGCATCAAAACTCAAACACCAGCAGACACAACACCAGTTAAGAAGTCACAAACCAATAAGGATCAACTGCTGAACCGGAGACGGCAGACCAACTTTTTCACTTCAAAAAGATTAAACTTGTGCATAGTAGAATCAGAGAACATGAGAATCATGTGTTCTCTCATAATAGCGTTGTTGGTAGTCTTGTCTTACGTTGATTACACATTGTTTGGAATGAACATAGTGAACTCGGAGAGTGTCGTTGCCTCGAGGCCTCTATACATTATTTTGCTGACTGATGTAACAATTGTGATGGCGCGATTAGTGTACTTCAGGGAGGCAGACGAAGAAGAAAGAGAGGTTAGTAGTAGTCAAGATAATGAGGGACAAAGTTGGGCTGAAGCAGTTAAGCTTTTAGAGAGGGGTTTGGCAGTCTATCAAGCCATTCGTGGGATTTTCATAGATTTCAGCGTTTATGTTGTGGTTGTCATTTGTGGCCTCTTTTTTATAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

28.32

Weight (kDa)

6.44

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52343
fragaria_vesca FvH4_6g31220 FvH4_6g31220
malus_domestica MD17G1194800.v1.1
prunus_persica Prupe.3G070800_v2.0.a1
pyrus_communis pycom17g20060
rosa_chinensis RchiOBHm_Chr2g0137891
rosa_laevigata RLG00000019688
rosa_multiflora Rmu_sc0002170.1_g000022
rosa_roxburghii Rroxscaffold_2G00106670
rosa_rugosa Rorug02G0348000
rosa_samantha Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana Rw2G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AbsI CCTCGAGG 1 cut(s) 505
Acc16I TGCGCA 1 cut(s) 216
AccII CGCG 1 cut(s) 556
AclWI GGATC 3 cut(s) 66, 79, 327
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 553, 657
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 76, 687
AgsI TTSAA 3 cut(s) 154, 230, 363
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 1 cut(s) 649
AluI AGCT 1 cut(s) 649
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 3 cut(s) 66, 79, 327
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 4 cut(s) 3, 66, 509, 733
AspLEI GCGC 2 cut(s) 217, 556
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 505
BalI TGGCCA 1 cut(s) 5
BccI CCATC 3 cut(s) 121, 248, 544
BceAI ACGGC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 687
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 163, 259
BseLI CCNNNNNNNGG 2 cut(s) 76, 687
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 556
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 4 cut(s) 5, 68, 511, 735
BsiEI CGRYCG 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 2 cut(s) 76, 687
BsmAI GTCTC 1 cut(s) 331
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 4 cut(s) 5, 68, 511, 735
BsoBI CYCGRG 1 cut(s) 505
Bsp143I GATC 4 cut(s) 58, 84, 89, 319
BspANI GGCC 4 cut(s) 5, 68, 511, 735
BspFNI CGCG 1 cut(s) 556
BspPI GGATC 3 cut(s) 66, 79, 327
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 293
BssMI GATC 4 cut(s) 58, 84, 89, 319
Bst2UI CCWGG 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 163, 259
BstFNI CGCG 1 cut(s) 556
BstHHI GCGC 2 cut(s) 217, 556
BstKTI GATC 4 cut(s) 61, 87, 92, 322
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 4 cut(s) 58, 84, 89, 319
BstMCI CGRYCG 1 cut(s) 92
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstUI CGCG 1 cut(s) 556
BstX2I RGATCY 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 4 cut(s) 5, 68, 511, 735
BtsCI GGATG 2 cut(s) 163, 259
CfoI GCGC 2 cut(s) 217, 556
Cfr13I GGNCC 1 cut(s) 67
CsiI ACCWGGT 1 cut(s) 146
Csp6I GTAC 1 cut(s) 565
CviAII CATG 3 cut(s) 64, 400, 409
CviJI RGCY 8 cut(s) 5, 68, 165, 511, 635, 649, 680, 735
CviKI_1 RGCY 8 cut(s) 5, 68, 165, 511, 635, 649, 680, 735
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 1 cut(s) 234
DpnI GATC 4 cut(s) 60, 86, 91, 321
DpnII GATC 4 cut(s) 58, 84, 89, 319
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 511
Eco57I CTGAAG 2 cut(s) 553, 657
Eco88I CYCGRG 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 3 cut(s) 67, 403, 412
FaqI GGGAC 1 cut(s) 636
FatI CATG 3 cut(s) 63, 399, 408
FokI GGATG 2 cut(s) 170, 266
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 2 cut(s) 216, 555
HaeIII GGCC 4 cut(s) 5, 68, 511, 735
HapII CCGG 1 cut(s) 334
HhaI GCGC 2 cut(s) 217, 556
Hin1II CATG 3 cut(s) 67, 403, 412
Hin6I GCGC 2 cut(s) 215, 554
HinP1I GCGC 2 cut(s) 215, 554
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 2 cut(s) 389, 405
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 484, 565
Hpy188I TCNGA 4 cut(s) 84, 89, 394, 490
Hpy188III TCNNGA 1 cut(s) 611
Hpy8I GTNNAC 2 cut(s) 484, 565
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 2 cut(s) 44, 381
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 3 cut(s) 67, 403, 412
HspAI GCGC 2 cut(s) 215, 554
Kzo9I GATC 4 cut(s) 58, 84, 89, 319
LpnPI CCDG 6 cut(s) 133, 160, 291, 306, 347, 556
LweI GCATC 1 cut(s) 270
MabI ACCWGGT 1 cut(s) 146
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 303, 538
MalI GATC 4 cut(s) 60, 86, 91, 321
MboI GATC 4 cut(s) 58, 84, 89, 319
MboII GAAGA 6 cut(s) 35, 42, 45, 48, 596, 599
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 11, 39, 543
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 168, 297, 371, 645
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 148
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 556
NdeII GATC 4 cut(s) 58, 84, 89, 319
NlaIII CATG 3 cut(s) 67, 403, 412
NmuCI GTSAC 1 cut(s) 303
NsbI TGCGCA 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 505
PceI AGGCCT 1 cut(s) 511
PfeI GAWTC 2 cut(s) 389, 405
Ple19I CGATCG 1 cut(s) 92
PsiI TTATAA 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspPI GGNCC 1 cut(s) 67
PspXI VCTCGAGB 1 cut(s) 505
PsuI RGATCY 1 cut(s) 84
PvuI CGATCG 1 cut(s) 92
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SaqAI TTAA 4 cut(s) 168, 297, 371, 645
Sau3AI GATC 4 cut(s) 58, 84, 89, 319
Sau96I GGNCC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 148
SetI ASST 8 cut(s) 130, 149, 175, 250, 453, 600, 651, 752
SexAI ACCWGGT 1 cut(s) 146
SfaNI GCATC 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 505
SlaI CTCGAG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
Sse9I AATT 3 cut(s) 11, 39, 543
SseBI AGGCCT 1 cut(s) 511
StuI AGGCCT 1 cut(s) 511
StyD4I CCNGG 1 cut(s) 146
TaiI ACGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 176, 506
TasI AATT 3 cut(s) 11, 39, 543
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 2 cut(s) 389, 405
Tru1I TTAA 4 cut(s) 168, 297, 371, 645
Tru9I TTAA 4 cut(s) 168, 297, 371, 645
TseFI GTSAC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 3 cut(s) 219, 488, 685
XhoI CTCGAG 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.