MD17G1194800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015169
Physical Location & Seq
Reverse (-)
23321700 .. 23323572
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1194800.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGACAACGCCAGCAGAGAAGAAAGAAGAAGAAGAATTGTAGAGAGAGGGTCGGATCGTATGGCTCTGATCACGGGTCGGATTCAATCTCTTCCTCCTCCGTCACCACCACCGTCACCTTCAGTACCACCACAATCCCACCGTCACAACGCTGGTACTGAGGGTAAGGTTGACAATCGTGCGGGTTCCCCATTGCAAAAAGCACATGAAGCTAGGAGTGAAGACGTTTCAAGGAAAGACAATGTTGAAACTGGAAGCCAATTAGATGGACCTTCATCCTTCAAATGTGACACAATAACTACAAGCACTATGGAACCGCAAGGCGCTGGTGACACCACCGCCAAAATTCAAACACAATTAGGCACATCAGTAGTTCAAAAGGCATCAACCGATACAGAACCTGCAAGCAGGCGGCATACGAGGGCAAGGTTTTTCTCTTCGAAAAGATTAAACTCCTGCATAGTAGAATCCGAGTGCACACGAGTTGTCTGTTCTCTCATAATAGCATTCTTGGTAGTGTTGTCTTTTGCTGATTACGCATTGTTTGGGATGAACTTGGTTAATTCGGAGAGTGTTGTAGCCTCGAGGCCTCTGTACATTATACTGCTGACTGACGTAACAATTGTTTTTGCGTGGTTGTGGCTTGTGAAACGAGAGGAGGTAGAGGAAGAAGGAGCGGCAGGGCCTCAGGATGGACATAATTGGGTTGAAGCAGTTAAGCTTTTGGAGAGGGGTTTGGTGGTTTACCAAGCCATTCGAGGTATATTCATAGATTTTAGTGTTTATGCAGTAGTTGTAATTTGTGGCCTTTCTCTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

29.94

Weight (kDa)

6.54

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52343
fragaria_vesca FvH4_6g31220 FvH4_6g31220
malus_domestica MD17G1194800.v1.1
prunus_persica Prupe.3G070800_v2.0.a1
pyrus_communis pycom17g20060
rosa_chinensis RchiOBHm_Chr2g0137891
rosa_laevigata RLG00000019688
rosa_multiflora Rmu_sc0002170.1_g000022
rosa_roxburghii Rroxscaffold_2G00106670
rosa_rugosa Rorug02G0348000
rosa_samantha Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana Rw2G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 677
AciI CCGC 5 cut(s) 182, 317, 339, 412, 677
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 3 cut(s) 126, 157, 596
AfiI CCNNNNNNNGG 2 cut(s) 692, 814
AgsI TTSAA 7 cut(s) 86, 231, 248, 283, 350, 377, 710
AluBI AGCT 2 cut(s) 212, 721
AluI AGCT 2 cut(s) 212, 721
Alw21I GWGCWC 1 cut(s) 479
Alw44I GTGCAC 1 cut(s) 475
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 3 cut(s) 587, 683, 805
ApaLI GTGCAC 1 cut(s) 475
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 269, 683
AsuHPI GGTGA 3 cut(s) 96, 108, 341
AsuII TTCGAA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 687
BaeGI GKGCMC 1 cut(s) 479
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 479
BccI CCATC 2 cut(s) 260, 686
BclI TGATCA 1 cut(s) 69
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 2 cut(s) 413, 678
BlsI GCNGC 2 cut(s) 414, 679
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 269, 683
BmiI GGNNCC 2 cut(s) 187, 315
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 692, 814
Bse1I ACTGG 1 cut(s) 256
Bse21I CCTNAGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 191
BseGI GGATG 3 cut(s) 275, 555, 697
BseLI CCNNNNNNNGG 2 cut(s) 692, 814
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 150, 701
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 2 cut(s) 87, 671
BseSI GKGCMC 1 cut(s) 479
BshFI GGCC 3 cut(s) 589, 685, 807
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 583
BslI CCNNNNNNNGG 2 cut(s) 692, 814
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 3 cut(s) 589, 685, 807
BsoBI CYCGRG 1 cut(s) 583
Bsp119I TTCGAA 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 479
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 2 cut(s) 55, 69
BspACI CCGC 5 cut(s) 182, 317, 339, 412, 677
BspANI GGCC 3 cut(s) 589, 685, 807
BspCNI CTCAG 2 cut(s) 151, 700
BspLI GGNNCC 2 cut(s) 187, 315
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 1 cut(s) 256
BssMI GATC 2 cut(s) 55, 69
BssSI CACGAG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 114, 143
Bst6I CTCTTC 2 cut(s) 96, 442
BstAUI TGTACA 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 3 cut(s) 13, 406, 410
BstDEI CTNAG 2 cut(s) 159, 687
BstF5I GGATG 3 cut(s) 275, 555, 697
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 2 cut(s) 58, 72
BstMBI GATC 2 cut(s) 55, 69
BstMWI GCNNNNNNNGC 2 cut(s) 209, 536
BstSLI GKGCMC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 266
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 3 cut(s) 589, 685, 807
BtsCI GGATG 3 cut(s) 275, 555, 697
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 13, 406, 410
CaiI CAGNNNCTG 1 cut(s) 401
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 269, 683
Csp6I GTAC 3 cut(s) 125, 156, 595
CviAII CATG 1 cut(s) 206
CviQI GTAC 3 cut(s) 125, 156, 595
DdeI CTNAG 2 cut(s) 159, 687
DpnI GATC 2 cut(s) 57, 71
DpnII GATC 2 cut(s) 55, 69
Eam1104I CTCTTC 2 cut(s) 96, 442
EarI CTCTTC 2 cut(s) 96, 442
Eco147I AGGCCT 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 683
FaeI CATG 1 cut(s) 209
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 413, 678
FokI GGATG 3 cut(s) 262, 562, 704
Fsp4HI GCNGC 2 cut(s) 413, 678
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 325
GluI GCNGC 2 cut(s) 413, 678
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 3 cut(s) 589, 685, 807
HhaI GCGC 1 cut(s) 326
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 2 cut(s) 82, 467
HphI GGTGA 3 cut(s) 96, 108, 341
Hpy166II GTNNAC 3 cut(s) 172, 477, 745
Hpy188I TCNGA 5 cut(s) 55, 69, 81, 472, 568
Hpy188III TCNNGA 1 cut(s) 689
Hpy8I GTNNAC 3 cut(s) 172, 477, 745
HpyAV CCTTC 4 cut(s) 129, 282, 289, 665
HpyCH4III ACNGT 2 cut(s) 114, 143
HpyCH4IV ACGT 2 cut(s) 225, 615
HpyCH4V TGCA 5 cut(s) 196, 404, 459, 477, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 536
HpyF3I CTNAG 2 cut(s) 159, 687
HpySE526I ACGT 2 cut(s) 225, 615
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 55, 69
LmnI GCTCC 1 cut(s) 674
LweI GCATC 1 cut(s) 392
MaeI CTAG 1 cut(s) 213
MaeII ACGT 2 cut(s) 225, 615
MaeIII GTNAC 6 cut(s) 102, 114, 143, 287, 329, 616
MalI GATC 2 cut(s) 57, 71
MbiI CCGCTC 1 cut(s) 677
MboI GATC 2 cut(s) 55, 69
MboII GAAGA 8 cut(s) 32, 39, 42, 45, 83, 233, 429, 680
MfeI CAATTG 1 cut(s) 621
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 8 cut(s) 36, 260, 345, 356, 562, 621, 700, 798
MmeI TCCRAC 2 cut(s) 33, 59
MseI TTAA 3 cut(s) 449, 561, 717
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 506
MwoI GCNNNNNNNGC 2 cut(s) 209, 536
NdeII GATC 2 cut(s) 55, 69
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 187, 315
NmuCI GTSAC 5 cut(s) 102, 114, 143, 287, 329
NspV TTCGAA 1 cut(s) 440
PaeR7I CTCGAG 1 cut(s) 583
PceI AGGCCT 1 cut(s) 589
PctI GAATGC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 82, 467
PkrI GCNGC 2 cut(s) 414, 679
PspN4I GGNNCC 2 cut(s) 187, 315
PspPI GGNCC 2 cut(s) 269, 683
PspXI VCTCGAGB 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 126, 157, 596
RsaNI GTAC 3 cut(s) 125, 156, 595
SaqAI TTAA 3 cut(s) 449, 561, 717
SatI GCNGC 2 cut(s) 413, 678
Sau3AI GATC 2 cut(s) 55, 69
Sau96I GGNCC 2 cut(s) 269, 683
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 1 cut(s) 392
Sfr274I CTCGAG 1 cut(s) 583
SfuI TTCGAA 1 cut(s) 440
SinI GGWCC 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 8 cut(s) 36, 260, 345, 356, 562, 621, 700, 798
SseBI AGGCCT 1 cut(s) 589
SsiI CCGC 5 cut(s) 182, 317, 339, 412, 677
SspMI CTAG 1 cut(s) 213
StuI AGGCCT 1 cut(s) 589
TaaI ACNGT 2 cut(s) 114, 143
TaiI ACGT 2 cut(s) 228, 618
TaqI TCGA 3 cut(s) 440, 584, 757
TasI AATT 8 cut(s) 36, 260, 345, 356, 562, 621, 700, 798
TatI WGTACW 1 cut(s) 594
TauI GCSGC 2 cut(s) 415, 680
TfiI GAWTC 2 cut(s) 82, 467
Tru1I TTAA 3 cut(s) 449, 561, 717
Tru9I TTAA 3 cut(s) 449, 561, 717
TseFI GTSAC 5 cut(s) 102, 114, 143, 287, 329
Tsp45I GTSAC 5 cut(s) 102, 114, 143, 287, 329
TspDTI ATGAA 4 cut(s) 222, 264, 566, 757
TspGWI ACGGA 1 cut(s) 90
VneI GTGCAC 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 345
XhoI CTCGAG 1 cut(s) 583
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.