Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002170.1

Orthogroup ID

OG0015169

Physical Location & Seq

Genomic Coordinates Forward (+)

105816 .. 109555

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002170.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgtcgaccggtgaagatgagatggcaaagaaattggcgagagaagaaagaagaagaagaattgcagaaagaggatcggatcgcatggcccttatcacgggtcagatccaatctctccctccctcaccacccctttcacctgtattaccacaacaacccggacctccaatcaatgttggtactcggatcaaggatgataaccgtgaaggttcgacattgcagacacaagaagctagcaataaagttccaacacaaaccaacattgaaactaagcaatccgaaggtgtggatggaagcaccaaaacacaactaccagcggacacaacaatagtttcgaagtcaccaaccaatacggatcaacctcagagccagcgtagggtcctcaattttttcagttcgaaaagattaaacttgtgcatagtagaatcagaaaacatgagaattgtgtgttctctcataatagctttgttggtagtcttgtcttacgttgattacgcattgtttggaatgaacatagtgaactcggagagtgtcgtggcctcgaggcctctatacattattttgctgactgatgtaacagttgtgatggcgcgattagtgtacttcagggaggcagacgaagaagaaagaatggtgagtagtagtcaagataatgagggacacagttgggctggagcagttaagcttttggagaggggtttggtggtctatcaagccattcgtgggattttcatagattttagtgtttatgctgtgcaaattcaacgagcctctgcgattgctaaggatatggctgcttgtctatcggtgacgctcacactcactgctgacactcaccgaagaggtggtaatggattttggagaggtgggttttatggcaatcgccgaaacctacttttacttggttgggagaatgactttggcgacctgagtggtaaggaagttgtcgtcgcgtttgaggatagagtaatcacttatcctgctagggacgtccatgagccgaattctgagggaggtggtggatatttggcaacgactctagatgacgaggtcctttcagtttgcttctacggttacggcggaggtaagcaagagggaaaattaaaggtaatagttgcggtggtatcagtgatggcttttaggaagggtaatgtgcaatctggagatgatcagcttgccaaattgacttcgtctggtggtgtggtagtagctacggtttctaaccctgatctctctatggtgacagaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

45.49

Weight (kDa)

5.52

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52343
fragaria_vesca	FvH4_6g31220 FvH4_6g31220
malus_domestica	MD17G1194800.v1.1
prunus_persica	Prupe.3G070800_v2.0.a1
pyrus_communis	pycom17g20060
rosa_chinensis	RchiOBHm_Chr2g0137891
rosa_laevigata	RLG00000019688
rosa_multiflora	Rmu_sc0002170.1_g000022
rosa_roxburghii	Rroxscaffold_2G00106670
rosa_rugosa	Rorug02G0348000
rosa_samantha	Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana	Rw2G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	993
AbsI	CCTCGAGG	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	592, 953
AciI	CCGC	3 cut(s)	317, 1080, 1118
AclWI	GGATC	5 cut(s)	82, 87, 100, 194, 363
AcsI	RAATTY	2 cut(s)	759, 1003
AcuI	CTGAAG	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	990
AfaI	GTAC	2 cut(s)	181, 602
AfiI	CCNNNNNNNGG	3 cut(s)	97, 376, 723
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	266, 764
AluBI	AGCT	5 cut(s)	233, 464, 685, 1174, 1211
AluI	AGCT	5 cut(s)	233, 464, 685, 1174, 1211
AlwI	GGATC	5 cut(s)	82, 87, 100, 194, 363
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	3 cut(s)	87, 537, 545
ApeKI	GCWGC	1 cut(s)	794
ApoI	RAATTY	2 cut(s)	759, 1003
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	4 cut(s)	88, 161, 379, 1051
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	8 cut(s)	23, 117, 129, 333, 646, 820, 827, 1252
AsuII	TTCGAA	2 cut(s)	335, 398
AsuNHI	GCTAGC	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	3 cut(s)	161, 379, 1051
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	4 cut(s)	16, 284, 580, 1126
BceAI	ACGGC	1 cut(s)	1093
BclI	TGATCA	1 cut(s)	1168
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	3 cut(s)	234, 984, 1040
BisI	GCNGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	796
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	3 cut(s)	161, 379, 1051
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	4 cut(s)	88, 161, 379, 1051
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	693, 1182
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu14I	TTCGAA	2 cut(s)	335, 398
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	990
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 376, 723
Bse118I	RCCGGY	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	199, 295
BseLI	CCNNNNNNNGG	3 cut(s)	97, 376, 723
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	3 cut(s)	377, 920, 999
BseXI	GCAGC	1 cut(s)	781
Bsh1236I	CGCG	2 cut(s)	592, 953
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	89, 539, 547
BshTI	ACCGGT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	9, 159
BslFI	GGGAC	2 cut(s)	672, 1001
BslI	CCNNNNNNNGG	3 cut(s)	97, 376, 723
BsmFI	GGGAC	2 cut(s)	672, 1001
BsnI	GGCC	3 cut(s)	89, 539, 547
BsoBI	CYCGRG	1 cut(s)	541
Bsp119I	TTCGAA	2 cut(s)	335, 398
Bsp143I	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
BspACI	CCGC	3 cut(s)	317, 1080, 1118
BspANI	GGCC	3 cut(s)	89, 539, 547
BspCNI	CTCAG	3 cut(s)	376, 921, 1000
BspFNI	CGCG	2 cut(s)	592, 953
BspLI	GGNNCC	1 cut(s)	380
BspOI	GCTAGC	1 cut(s)	237
BspPI	GGATC	5 cut(s)	82, 87, 100, 194, 363
BspT104I	TTCGAA	2 cut(s)	335, 398
BsrDI	GCAATG	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
BssNI	GRCGYC	1 cut(s)	990
Bst4CI	ACNGT	5 cut(s)	203, 580, 665, 1073, 1216
Bst6I	CTCTTC	1 cut(s)	835
BstACI	GRCGYC	1 cut(s)	990
BstBI	TTCGAA	2 cut(s)	335, 398
BstC8I	GCNNGC	3 cut(s)	235, 371, 1176
BstDEI	CTNAG	6 cut(s)	270, 363, 783, 929, 1008, 1251
BstF5I	GGATG	2 cut(s)	199, 295
BstFNI	CGCG	2 cut(s)	592, 953
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	7 cut(s)	77, 82, 108, 189, 358, 1171, 1231
BstMBI	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
BstMCI	CGRYCG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	2 cut(s)	592, 953
BstV1I	GCAGC	1 cut(s)	781
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	89, 539, 547
BtsCI	GGATG	2 cut(s)	199, 295
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	2 cut(s)	822, 1134
Cac8I	GCNNGC	3 cut(s)	235, 371, 1176
CfoI	GCGC	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	4 cut(s)	88, 161, 379, 1051
CseI	GACGC	1 cut(s)	820
Csp6I	GTAC	2 cut(s)	180, 601
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	3 cut(s)	85, 436, 995
CviQI	GTAC	2 cut(s)	180, 601
DdeI	CTNAG	6 cut(s)	270, 363, 783, 929, 1008, 1251
DpnI	GATC	7 cut(s)	76, 81, 107, 188, 357, 1170, 1230
DpnII	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
EciI	GGCGGA	1 cut(s)	1095
Eco147I	AGGCCT	1 cut(s)	547
Eco47I	GGWCC	3 cut(s)	161, 379, 1051
Eco57I	CTGAAG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	379, 1051
EcoRI	GAATTC	1 cut(s)	1003
FaeI	CATG	3 cut(s)	88, 439, 998
FaqI	GGGAC	2 cut(s)	672, 1001
FatI	CATG	3 cut(s)	84, 435, 994
FbaI	TGATCA	1 cut(s)	1168
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	795
FokI	GGATG	2 cut(s)	206, 302
Fsp4HI	GCNGC	1 cut(s)	795
FspBI	CTAG	3 cut(s)	234, 984, 1040
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	1 cut(s)	795
GsuI	CTGGAG	2 cut(s)	693, 1182
HaeIII	GGCC	3 cut(s)	89, 539, 547
HapII	CCGG	2 cut(s)	9, 159
HgaI	GACGC	1 cut(s)	820
HhaI	GCGC	1 cut(s)	592
Hin1I	GRCGYC	1 cut(s)	990
Hin1II	CATG	3 cut(s)	88, 439, 998
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	2 cut(s)	425, 1036
HpaII	CCGG	2 cut(s)	9, 159
HphI	GGTGA	8 cut(s)	23, 117, 129, 333, 646, 820, 827, 1252
Hpy166II	GTNNAC	3 cut(s)	6, 520, 601
Hpy188I	TCNGA	8 cut(s)	79, 105, 186, 280, 366, 430, 526, 1009
Hpy188III	TCNNGA	3 cut(s)	647, 1040, 1161
Hpy8I	GTNNAC	3 cut(s)	6, 520, 601
Hpy99I	CGWCG	1 cut(s)	953
HpyAV	CCTTC	3 cut(s)	200, 275, 1138
HpyCH4III	ACNGT	5 cut(s)	203, 580, 665, 1073, 1216
HpyCH4IV	ACGT	2 cut(s)	486, 990
HpyCH4V	TGCA	5 cut(s)	65, 220, 417, 757, 1156
HpyF3I	CTNAG	6 cut(s)	270, 363, 783, 929, 1008, 1251
HpySE526I	ACGT	2 cut(s)	486, 990
Hsp92I	GRCGYC	1 cut(s)	990
Hsp92II	CATG	3 cut(s)	88, 439, 998
HspAI	GCGC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	1168
Kzo9I	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
LmnI	GCTCC	1 cut(s)	674
Lsp1109I	GCAGC	1 cut(s)	781
MaeI	CTAG	3 cut(s)	234, 984, 1040
MaeII	ACGT	2 cut(s)	486, 990
MaeIII	GTNAC	5 cut(s)	339, 574, 808, 1073, 1240
MalI	GATC	7 cut(s)	76, 81, 107, 188, 357, 1170, 1230
MboI	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
MboII	GAAGA	8 cut(s)	26, 56, 63, 66, 69, 632, 635, 852
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	8 cut(s)	32, 60, 385, 441, 759, 1003, 1100, 1181
MlyI	GAGTC	1 cut(s)	1030
MmeI	TCCRAC	1 cut(s)	272
MseI	TTAA	3 cut(s)	407, 681, 1103
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	2 cut(s)	9, 159
MspR9I	CCNGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	592, 953
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	88, 439, 998
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	3 cut(s)	339, 808, 1240
NspV	TTCGAA	2 cut(s)	335, 398
PaeR7I	CTCGAG	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	425
PflFI	GACNNNGTC	2 cut(s)	1049, 1189
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	796
PleI	GAGTC	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1030
PpuMI	RGGWCCY	2 cut(s)	379, 1051
Psp5II	RGGWCCY	2 cut(s)	379, 1051
PspN4I	GGNNCC	1 cut(s)	380
PspPI	GGNCC	4 cut(s)	88, 161, 379, 1051
PspPPI	RGGWCCY	2 cut(s)	379, 1051
PspXI	VCTCGAGB	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	105
PsyI	GACNNNGTC	2 cut(s)	1049, 1189
RsaI	GTAC	2 cut(s)	181, 602
RsaNI	GTAC	2 cut(s)	180, 601
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	407, 681, 1103
SatI	GCNGC	1 cut(s)	795
Sau3AI	GATC	7 cut(s)	74, 79, 105, 186, 355, 1168, 1228
Sau96I	GGNCC	4 cut(s)	88, 161, 379, 1051
SchI	GAGTC	1 cut(s)	1030
ScrFI	CCNGG	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	541
SfuI	TTCGAA	2 cut(s)	335, 398
SinI	GGWCC	3 cut(s)	161, 379, 1051
SlaI	CTCGAG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	8 cut(s)	32, 60, 385, 441, 759, 1003, 1100, 1181
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	3 cut(s)	317, 1080, 1118
SspMI	CTAG	3 cut(s)	234, 984, 1040
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	5 cut(s)	203, 580, 665, 1073, 1216
TaiI	ACGT	2 cut(s)	489, 993
TaqI	TCGA	5 cut(s)	5, 212, 335, 398, 542
TasI	AATT	8 cut(s)	32, 60, 385, 441, 759, 1003, 1100, 1181
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	407, 681, 1103
Tru9I	TTAA	3 cut(s)	407, 681, 1103
TscAI	CASTG	2 cut(s)	829, 1134
TseFI	GTSAC	3 cut(s)	339, 808, 1240
TseI	GCWGC	1 cut(s)	794
Tsp45I	GTSAC	3 cut(s)	339, 808, 1240
TspDTI	ATGAA	2 cut(s)	524, 721
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	829, 1134
Tth111I	GACNNNGTC	2 cut(s)	1049, 1189
VpaK11BI	GGWCC	3 cut(s)	161, 379, 1051
XapI	RAATTY	2 cut(s)	759, 1003
XbaI	TCTAGA	1 cut(s)	1039
XhoI	CTCGAG	1 cut(s)	541
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	234, 984, 1040
ZraI	GACGTC	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.