Rorug02G0348000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015169
Physical Location & Seq
Forward (+)
43597080 .. 43597760
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0348000.1

Sequence Viewer

Length: 681 bp
ATGCGCACCTCACTTCAACAGTTTACCTCGGACAGAGAGGTGCCGGAATGGGGATCATCTATTCCGGATGAGAAGGAATTTTTGTCAAACGCTGGCTGGAAGACAGAGCATGGGAGATTTTTCCTGGAATGGTACTCTGATATTCTTGTGTCCCATGCAGAATGCATTTTGAGGCAAGCCGAACAGTGTCTGTCTCATGTTGGAATTTCAGCAAAAGTGGCCAAAAACCTGTATCAGGAATATTATAAGTTTGAGGCACCGTTGTTTACTTGGACTGCTGGGTATTACTGCATCTCCCTTCGTAACATGTACACCCGGATTGCTGTTGTATTTGGCTGCTACGTTATAAATCTGTGCTGCCCGGACTGTGGTTTGGAGGATGACAGGGTCGAAAAAGTCTTTGGACTGTGGTTTGGAATGTCGATGGGTGAGAGTACAAGAGTTTCAAGTACAACAATAATGGCAGGTGAAATATCGATGCCCGGATCGGAAAGTTTTGATGAAGTACTGGGTGTGAGACTTGCAAGACTGTACAACTTTCTGCACCACTTCAAGACTGCACTTGGACTTTCTGTAACCGTGAAACTGTCATTCAACTTCAGGGTAAGCAGGATTGAAGACTTTAACGTGGCTGAGTACAGGAAGTTTCTTCGCAGCTTTTATGCTGGTATACTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.94

Weight (kDa)

5.98

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 23 - 116 4.9e-10 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52343
fragaria_vesca FvH4_6g31220 FvH4_6g31220
malus_domestica MD17G1194800.v1.1
prunus_persica Prupe.3G070800_v2.0.a1
pyrus_communis pycom17g20060
rosa_chinensis RchiOBHm_Chr2g0137891
rosa_laevigata RLG00000019688
rosa_multiflora Rmu_sc0002170.1_g000022
rosa_roxburghii Rroxscaffold_2G00106670
rosa_rugosa Rorug02G0348000
rosa_samantha Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana Rw2G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 246, 347
AarI CACCTGC 1 cut(s) 455
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 40, 256
AccI GTMKAC 1 cut(s) 670
AccIII TCCGGA 1 cut(s) 64
AclWI GGATC 2 cut(s) 61, 493
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 2 cut(s) 77, 204
AcuI CTGAAG 1 cut(s) 583
AfaI GTAC 7 cut(s) 134, 311, 436, 451, 507, 533, 638
AfiI CCNNNNNNNGG 3 cut(s) 50, 235, 368
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 5 cut(s) 17, 447, 553, 595, 617
AjnI CCWGG 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 1 cut(s) 657
AluI AGCT 1 cut(s) 657
Alw26I GTCTC 2 cut(s) 198, 511
AlwI GGATC 2 cut(s) 61, 493
AlwNI CAGNNNCTG 1 cut(s) 190
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 336, 357, 654
ApoI RAATTY 2 cut(s) 77, 204
AspLEI GCGC 1 cut(s) 6
AsuC2I CCSGG 3 cut(s) 316, 362, 483
AsuHPI GGTGA 2 cut(s) 440, 479
BalI TGGCCA 1 cut(s) 221
BanI GGYRCC 2 cut(s) 40, 256
BbsI GAAGAC 2 cut(s) 107, 624
BbvI GCAGC 3 cut(s) 323, 344, 666
BccI CCATC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 3 cut(s) 316, 362, 483
BcoDI GTCTC 2 cut(s) 198, 511
BfuAI ACCTGC 1 cut(s) 455
BisI GCNGC 3 cut(s) 337, 358, 655
BlsI GCNGC 3 cut(s) 338, 359, 656
BmcAI AGTACT 1 cut(s) 507
Bme1390I CCNGG 4 cut(s) 125, 316, 362, 483
BmiI GGNNCC 2 cut(s) 42, 258
BmrFI CCNGG 4 cut(s) 125, 316, 362, 483
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 2 cut(s) 300, 468
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 107, 624
BpuMI CCSGG 3 cut(s) 316, 362, 483
Bsa29I ATCGAT 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 235, 368
Bse1I ACTGG 2 cut(s) 513, 678
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 73, 385
BseLI CCNNNNNNNGG 3 cut(s) 50, 235, 368
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 2 cut(s) 513, 678
BseXI GCAGC 3 cut(s) 323, 344, 666
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 2 cut(s) 527, 543
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 2 cut(s) 40, 256
BshVI ATCGAT 1 cut(s) 476
BsiSI CCGG 5 cut(s) 44, 65, 316, 362, 483
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 3 cut(s) 50, 235, 368
BsmAI GTCTC 2 cut(s) 198, 511
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 64
Bsp1407I TGTACA 2 cut(s) 309, 531
Bsp143I GATC 2 cut(s) 53, 485
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 625
BspDI ATCGAT 1 cut(s) 476
BspEI TCCGGA 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 42, 258
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 2 cut(s) 61, 493
BspT107I GGYRCC 2 cut(s) 40, 256
BsrGI TGTACA 2 cut(s) 309, 531
BsrI ACTGG 2 cut(s) 513, 678
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 53, 485
BssNAI GTATAC 1 cut(s) 671
Bst1107I GTATAC 1 cut(s) 671
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 8 cut(s) 21, 186, 261, 368, 408, 531, 580, 588
BstAUI TGTACA 2 cut(s) 309, 531
BstC8I GCNNGC 2 cut(s) 94, 177
BstDEI CTNAG 1 cut(s) 633
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 73, 385
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 56, 488
BstMAI GTCTC 2 cut(s) 198, 511
BstMBI GATC 2 cut(s) 53, 485
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 4 cut(s) 123, 314, 360, 481
BstV1I GCAGC 3 cut(s) 323, 344, 666
BstV2I GAAGAC 2 cut(s) 107, 624
BstZ17I GTATAC 1 cut(s) 671
Bsu15I ATCGAT 1 cut(s) 476
BsuRI GGCC 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 476
BtsCI GGATG 2 cut(s) 73, 385
BtsIMutI CAGTG 1 cut(s) 191
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 2 cut(s) 94, 177
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 476
Csp6I GTAC 7 cut(s) 133, 310, 435, 450, 506, 532, 637
CviAII CATG 4 cut(s) 110, 155, 197, 307
CviJI RGCY 7 cut(s) 96, 179, 221, 336, 632, 657, 678
CviKI_1 RGCY 7 cut(s) 96, 179, 221, 336, 632, 657, 678
CviQI GTAC 7 cut(s) 133, 310, 435, 450, 506, 532, 637
DdeI CTNAG 1 cut(s) 633
DpnI GATC 2 cut(s) 55, 487
DpnII GATC 2 cut(s) 53, 485
EaeI YGGCCR 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 583
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 167
FaeI CATG 4 cut(s) 113, 158, 200, 310
FaiI YATR 8 cut(s) 111, 156, 198, 246, 308, 347, 663, 671
FaqI GGGAC 1 cut(s) 136
FatI CATG 4 cut(s) 109, 154, 196, 306
FblI GTMKAC 1 cut(s) 670
Fnu4HI GCNGC 3 cut(s) 337, 358, 655
FokI GGATG 2 cut(s) 80, 392
Fsp4HI GCNGC 3 cut(s) 337, 358, 655
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 3 cut(s) 337, 358, 655
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 221
HapII CCGG 5 cut(s) 44, 65, 316, 362, 483
HhaI GCGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 113, 158, 200, 310
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpaII CCGG 5 cut(s) 44, 65, 316, 362, 483
HphI GGTGA 2 cut(s) 440, 479
Hpy166II GTNNAC 4 cut(s) 24, 267, 312, 671
Hpy188I TCNGA 3 cut(s) 31, 139, 490
Hpy188III TCNNGA 3 cut(s) 65, 236, 553
Hpy8I GTNNAC 4 cut(s) 24, 267, 312, 671
HpyAV CCTTC 2 cut(s) 67, 308
HpyCH4III ACNGT 8 cut(s) 21, 186, 261, 368, 408, 531, 580, 588
HpyCH4IV ACGT 2 cut(s) 342, 627
HpyCH4V TGCA 6 cut(s) 158, 165, 291, 524, 544, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 2 cut(s) 342, 627
Hsp92II CATG 4 cut(s) 113, 158, 200, 310
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 53, 485
Lsp1109I GCAGC 3 cut(s) 323, 344, 666
LweI GCATC 2 cut(s) 300, 468
MaeII ACGT 2 cut(s) 342, 627
MaeIII GTNAC 2 cut(s) 302, 574
MalI GATC 2 cut(s) 55, 487
MboI GATC 2 cut(s) 53, 485
MboII GAAGA 3 cut(s) 112, 629, 641
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 2 cut(s) 77, 204
MluNI TGGCCA 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 6 cut(s) 19, 31, 37, 165, 247, 370
Mox20I TGGCCA 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 167
MroI TCCGGA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 221
MseI TTAA 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 5 cut(s) 44, 65, 316, 362, 483
MspR9I CCNGG 4 cut(s) 125, 316, 362, 483
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 3 cut(s) 316, 362, 483
NdeII GATC 2 cut(s) 53, 485
NlaIII CATG 4 cut(s) 113, 158, 200, 310
NlaIV GGNNCC 2 cut(s) 42, 258
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 310
PaqCI CACCTGC 1 cut(s) 455
PciI ACATGT 1 cut(s) 306
PctI GAATGC 1 cut(s) 167
PflFI GACNNNGTC 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 3 cut(s) 338, 359, 656
PscI ACATGT 1 cut(s) 306
PsiI TTATAA 2 cut(s) 246, 347
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 42, 258
PstNI CAGNNNCTG 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 7 cut(s) 134, 311, 436, 451, 507, 533, 638
RsaNI GTAC 7 cut(s) 133, 310, 435, 450, 506, 532, 637
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 3 cut(s) 337, 358, 655
Sau3AI GATC 2 cut(s) 53, 485
ScaI AGTACT 1 cut(s) 507
ScrFI CCNGG 4 cut(s) 125, 316, 362, 483
SetI ASST 8 cut(s) 11, 29, 42, 231, 345, 469, 630, 659
SfaNI GCATC 2 cut(s) 300, 468
Sse9I AATT 2 cut(s) 77, 204
SspI AATATT 1 cut(s) 242
StyD4I CCNGG 4 cut(s) 123, 314, 360, 481
TaaI ACNGT 8 cut(s) 21, 186, 261, 368, 408, 531, 580, 588
TaiI ACGT 2 cut(s) 345, 630
TaqI TCGA 3 cut(s) 390, 422, 476
TasI AATT 2 cut(s) 77, 204
TatI WGTACW 6 cut(s) 309, 434, 449, 505, 531, 636
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 1 cut(s) 191
TseI GCWGC 3 cut(s) 336, 357, 654
TspDTI ATGAA 1 cut(s) 516
TspRI CASTG 1 cut(s) 191
Tth111I GACNNNGTC 1 cut(s) 386
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 2 cut(s) 77, 204
XceI RCATGY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 670
ZrmI AGTACT 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.