Rh2AG394400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015169
Physical Location & Seq
Forward (+)
58998807 .. 59001115
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG394400.1

Sequence Viewer

Length: 642 bp
ATGGTACTTAATAAGCTAAGAGAAGTTGGTACTCGGTTCAAGGATGATAACCGTAAAGGTTCGACATTGCAAACACAAGAAGCTAGCAATGAAGTTTCAACACAAACCAACATTGAAACTAAGCAATCCGAAGGTGTGGATGGAAGCACCAAAGCACAACTACCAGCGGACACAACAATAGTTTCAAAGTCACCAACCAATACGGATCAACCTCAGAGCCAGCGTAGGGTCCTCAATTTTTTCAGTTCGAAAAGATTAAACTTGTGCATAGTAGAATCAGAAAACATGAGAATTGTGTGTTCTCTCATAATAGCTTTGTTGGTAGTCTTGTCTTACGTTGATTACACATTGTTTGGAATGAACATAGTGAACTCGGAGAGTGTCGTGGCCTCGAGGCCTCTATACATTATTTTGCTGACTGATGTAACAGTTGTGATGGCGCGATTAGTGTACTTCAGGGAGGCAGACGAAGAAGAAAGAATGGTGAGTAGTAGTCAAGATAATGAGGGACACAGTTGGGCTGGAGCAGTTAAGCTTTTGGAGAGGGGTTTGGTGGTCTATCAAGCCATTCGTGGGATTTTCATAGATTTTAGTGTTTATGCTGTGGTTGTTATTTGTGGCCTCTCTTTTTTTATAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.76

Weight (kDa)

5.32

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52343
fragaria_vesca FvH4_6g31220 FvH4_6g31220
malus_domestica MD17G1194800.v1.1
prunus_persica Prupe.3G070800_v2.0.a1
pyrus_communis pycom17g20060
rosa_chinensis RchiOBHm_Chr2g0137891
rosa_laevigata RLG00000019688
rosa_multiflora Rmu_sc0002170.1_g000022
rosa_roxburghii Rroxscaffold_2G00106670
rosa_rugosa Rorug02G0348000
rosa_samantha Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana Rw2G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 635
AbsI CCTCGAGG 1 cut(s) 391
AccII CGCG 1 cut(s) 442
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 439
AfaI GTAC 3 cut(s) 6, 31, 452
AfiI CCNNNNNNNGG 2 cut(s) 226, 573
AgsI TTSAA 4 cut(s) 40, 99, 116, 186
AluBI AGCT 4 cut(s) 16, 83, 314, 535
AluI AGCT 4 cut(s) 16, 83, 314, 535
AlwI GGATC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 3 cut(s) 387, 395, 619
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 183, 496
AsuII TTCGAA 1 cut(s) 248
AsuNHI GCTAGC 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 1 cut(s) 229
BccI CCATC 2 cut(s) 134, 430
BfaI CTAG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
BmtI GCTAGC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 573
Bse3DI GCAATG 2 cut(s) 65, 94
BseGI GGATG 2 cut(s) 49, 145
BseLI CCNNNNNNNGG 2 cut(s) 226, 573
BseMI GCAATG 2 cut(s) 65, 94
BseMII CTCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 3 cut(s) 389, 397, 621
BsiHKCI CYCGRG 1 cut(s) 391
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 226, 573
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 3 cut(s) 389, 397, 621
BsoBI CYCGRG 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 248
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 167
BspANI GGCC 3 cut(s) 389, 397, 621
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 230
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 213
BspT104I TTCGAA 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 65, 94
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 3 cut(s) 53, 430, 515
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 85, 221
BstDEI CTNAG 3 cut(s) 17, 120, 213
BstF5I GGATG 2 cut(s) 49, 145
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstUI CGCG 1 cut(s) 442
BsuRI GGCC 3 cut(s) 389, 397, 621
BtsCI GGATG 2 cut(s) 49, 145
Cac8I GCNNGC 2 cut(s) 85, 221
CfoI GCGC 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 3 cut(s) 5, 30, 451
CviAII CATG 1 cut(s) 286
CviQI GTAC 3 cut(s) 5, 30, 451
DdeI CTNAG 3 cut(s) 17, 120, 213
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 229
FaeI CATG 1 cut(s) 289
FaiI YATR 8 cut(s) 269, 287, 308, 365, 403, 584, 600, 635
FaqI GGGAC 1 cut(s) 522
FatI CATG 1 cut(s) 285
FokI GGATG 2 cut(s) 56, 152
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 3 cut(s) 389, 397, 621
HhaI GCGC 1 cut(s) 442
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 1 cut(s) 275
HphI GGTGA 2 cut(s) 183, 496
Hpy166II GTNNAC 2 cut(s) 370, 451
Hpy188I TCNGA 4 cut(s) 130, 216, 280, 376
Hpy188III TCNNGA 1 cut(s) 497
Hpy8I GTNNAC 2 cut(s) 370, 451
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 3 cut(s) 53, 430, 515
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 70, 267
HpyF3I CTNAG 3 cut(s) 17, 120, 213
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 440
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 524
LpnPI CCDG 4 cut(s) 177, 233, 442, 507
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 189, 424
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 482, 485
MluCI AATT 2 cut(s) 235, 291
MnlI CCTC 9 cut(s) 222, 242, 387, 400, 408, 454, 499, 537, 632
MseI TTAA 3 cut(s) 9, 257, 531
MspA1I CMGCKG 1 cut(s) 167
MvnI CGCG 1 cut(s) 442
NdeII GATC 1 cut(s) 205
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 189
NspV TTCGAA 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 391
PceI AGGCCT 1 cut(s) 397
PfeI GAWTC 1 cut(s) 275
PpuMI RGGWCCY 1 cut(s) 229
PsiI TTATAA 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 391
RsaI GTAC 3 cut(s) 6, 31, 452
RsaNI GTAC 3 cut(s) 5, 30, 451
SaqAI TTAA 3 cut(s) 9, 257, 531
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 229
SetI ASST 9 cut(s) 18, 61, 85, 136, 214, 316, 339, 537, 641
Sfr274I CTCGAG 1 cut(s) 391
SfuI TTCGAA 1 cut(s) 248
SinI GGWCC 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 391
SmoI CTYRAG 1 cut(s) 391
Sse9I AATT 2 cut(s) 235, 291
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 84
StuI AGGCCT 1 cut(s) 397
TaaI ACNGT 3 cut(s) 53, 430, 515
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 62, 248, 392
TasI AATT 2 cut(s) 235, 291
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 3 cut(s) 9, 257, 531
Tru9I TTAA 3 cut(s) 9, 257, 531
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 3 cut(s) 105, 374, 571
TspGWI ACGGA 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 391
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.