Prupe.3G070800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015169
Physical Location & Seq
Reverse (-)
5078883 .. 5080629
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G070800.1

Sequence Viewer

Length: 837 bp
ATGGCATCGAACAACAACGCGAGCAGAGAAGAGAGAAGAAGAAGAATTGTAGAGAGAGAATCGGATCGTATGGCTCTCATCACCGGCCGAATCCAATCTCTCCCTCCTCCCTCACCGCCACCATCGCCTTCATTACCACCACATGATCGCGCTCTGCACACCCGTCGCATCAATGCTGGTACTGAGGGTAAAGATGGCACCCCTGCAGATTCTACATTGCTGAAAGTACATGGAGCTAGCAATGAAGACATTTCAAGGCAAAACAATGCAGAGACTGGAAGCCAAGATGGACCTTCATCTTGTCAATGTGACACAACTACAAATACTTTGCAACCCCATGGTGTTGATGGCACCACCCAAGTTCAACCACAATTGGGCACATCAATAGTTCAAAAGGCACCACCAACCGATACAGAACTTGCAATCACACATCGGAGGGCAAGGTTTTTCACTTCGAAACGATTAAACTCGTGCATTGTAGAATCGGAGAACATGCGCATTTTCTGTGCTCTCATAATAGCATTCTTGGTAGTGTTGTCTTATGTTGATTATGCGTTGTTTGGAGTGAACTTGGTGAAGTCGGAGAGCGTTGTGGCCTCAAGGCCTCTGTACATTATACTGCTTACTGACGTAACAATTGTTCTGGCACGAATGATCCTTGTGAGACGAGAGGATGTAGAGGAAGAAAGAGTTGTAGTCCCTCAAGATGGACATAATTGGGTTGAGGCAGTGAAGCTCTTGGAGAGGGGTTTGGTGGTTTACCAAGCCATTCGTGGGGTTTTCATAGATTTTAGTGTTTATGTTGTAGTTGTTATATGTGGGCTTTCTTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

30.7

Weight (kDa)

6.6

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52343
fragaria_vesca FvH4_6g31220 FvH4_6g31220
malus_domestica MD17G1194800.v1.1
prunus_persica Prupe.3G070800_v2.0.a1
pyrus_communis pycom17g20060
rosa_chinensis RchiOBHm_Chr2g0137891
rosa_laevigata RLG00000019688
rosa_multiflora Rmu_sc0002170.1_g000022
rosa_roxburghii Rroxscaffold_2G00106670
rosa_rugosa Rorug02G0348000
rosa_samantha Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana Rw2G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 497
AccB1I GGYRCC 3 cut(s) 197, 350, 397
AccII CGCG 2 cut(s) 20, 150
AciI CCGC 1 cut(s) 116
AclWI GGATC 2 cut(s) 72, 649
AcoI YGGCCR 1 cut(s) 85
AfaI GTAC 3 cut(s) 181, 228, 611
AfiI CCNNNNNNNGG 3 cut(s) 374, 707, 774
AgsI TTSAA 3 cut(s) 255, 365, 392
AluBI AGCT 2 cut(s) 236, 736
AluI AGCT 2 cut(s) 236, 736
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 2 cut(s) 266, 658
AlwI GGATC 2 cut(s) 72, 649
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 3 cut(s) 85, 594, 602
AspLEI GCGC 2 cut(s) 152, 498
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 3 cut(s) 73, 105, 586
AsuII TTCGAA 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 236
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 380
BanI GGYRCC 3 cut(s) 197, 350, 397
BauI CACGAG 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 511
BccI CCATC 5 cut(s) 130, 188, 281, 341, 701
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcoDI GTCTC 2 cut(s) 266, 658
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 3 cut(s) 199, 352, 399
BmsI GCATC 2 cut(s) 14, 177
BmtI GCTAGC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 583, 687
BsaJI CCNNGG 1 cut(s) 337
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 707, 774
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 2 cut(s) 215, 247
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 3 cut(s) 374, 707, 774
BseMI GCAATG 2 cut(s) 215, 247
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 20, 150
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 87, 596, 604
BshNI GGYRCC 3 cut(s) 197, 350, 397
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 511
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 3 cut(s) 374, 707, 774
BsmAI GTCTC 2 cut(s) 266, 658
BsmBI CGTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 683
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 3 cut(s) 87, 596, 604
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 380, 511
Bsp1407I TGTACA 1 cut(s) 609
Bsp143I GATC 3 cut(s) 64, 145, 654
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 1 cut(s) 116
BspANI GGCC 3 cut(s) 87, 596, 604
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 2 cut(s) 20, 150
BspLI GGNNCC 3 cut(s) 199, 352, 399
BspMAI CTGCAG 1 cut(s) 208
BspOI GCTAGC 1 cut(s) 240
BspPI GGATC 2 cut(s) 72, 649
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 3 cut(s) 197, 350, 397
BsrDI GCAATG 2 cut(s) 215, 247
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 609
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 3 cut(s) 64, 145, 654
BssSI CACGAG 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 609
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 22, 238
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 679
BstFNI CGCG 2 cut(s) 20, 150
BstHHI GCGC 2 cut(s) 152, 498
BstKTI GATC 3 cut(s) 67, 148, 657
BstMAI GTCTC 2 cut(s) 266, 658
BstMBI GATC 3 cut(s) 64, 145, 654
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 380
BstUI CGCG 2 cut(s) 20, 150
BstV2I GAAGAC 1 cut(s) 252
BstZI CGGCCG 1 cut(s) 85
BsuRI GGCC 3 cut(s) 87, 596, 604
BtgI CCRYGG 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 679
BtsI GCAGTG 1 cut(s) 735
BtsIMutI CAGTG 1 cut(s) 735
Cac8I GCNNGC 2 cut(s) 22, 238
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 2 cut(s) 152, 498
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 3 cut(s) 180, 227, 610
CviAII CATG 4 cut(s) 143, 230, 338, 493
CviJI RGCY 9 cut(s) 74, 87, 236, 282, 596, 604, 736, 767, 823
CviKI_1 RGCY 9 cut(s) 74, 87, 236, 282, 596, 604, 736, 767, 823
CviQI GTAC 3 cut(s) 180, 227, 610
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 66, 147, 656
DpnII GATC 3 cut(s) 64, 145, 654
EaeI YGGCCR 1 cut(s) 85
EagI CGGCCG 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EclXI CGGCCG 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 337
Eco147I AGGCCT 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 290
Eco52I CGGCCG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 658
FaeI CATG 4 cut(s) 146, 233, 341, 496
FaqI GGGAC 1 cut(s) 683
FatI CATG 4 cut(s) 142, 229, 337, 492
FokI GGATG 1 cut(s) 686
FspAI RTGCGCAY 1 cut(s) 497
FspBI CTAG 1 cut(s) 237
FspI TGCGCA 1 cut(s) 497
GlaI GCGC 2 cut(s) 151, 497
HaeIII GGCC 3 cut(s) 87, 596, 604
HapII CCGG 1 cut(s) 84
HhaI GCGC 2 cut(s) 152, 498
Hin1II CATG 4 cut(s) 146, 233, 341, 496
Hin6I GCGC 2 cut(s) 150, 496
HinP1I GCGC 2 cut(s) 150, 496
HinfI GANTC 4 cut(s) 59, 90, 209, 482
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 73, 105, 586
Hpy166II GTNNAC 2 cut(s) 568, 760
Hpy188I TCNGA 4 cut(s) 64, 435, 487, 583
Hpy188III TCNNGA 1 cut(s) 704
Hpy8I GTNNAC 2 cut(s) 568, 760
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 138, 303
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 6 cut(s) 157, 206, 269, 331, 422, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 4 cut(s) 146, 233, 341, 496
HspAI GCGC 2 cut(s) 150, 496
Kzo9I GATC 3 cut(s) 64, 145, 654
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 5 cut(s) 97, 162, 216, 261, 629
LweI GCATC 2 cut(s) 14, 177
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 2 cut(s) 308, 631
MalI GATC 3 cut(s) 66, 147, 656
MboI GATC 3 cut(s) 64, 145, 654
MboII GAAGA 6 cut(s) 41, 48, 51, 54, 257, 695
MfeI CAATTG 2 cut(s) 371, 636
MhlI GDGCHC 2 cut(s) 380, 511
MluCI AATT 4 cut(s) 45, 371, 636, 715
MmeI TCCRAC 1 cut(s) 561
MseI TTAA 1 cut(s) 464
MspI CCGG 1 cut(s) 84
MunI CAATTG 2 cut(s) 371, 636
Mva1269I GAATGC 1 cut(s) 521
MvnI CGCG 2 cut(s) 20, 150
MwoI GCNNNNNNNGC 1 cut(s) 124
NcoI CCATGG 1 cut(s) 337
NdeII GATC 3 cut(s) 64, 145, 654
NheI GCTAGC 1 cut(s) 236
NlaIII CATG 4 cut(s) 146, 233, 341, 496
NlaIV GGNNCC 3 cut(s) 199, 352, 399
NmuCI GTSAC 1 cut(s) 308
NsbI TGCGCA 1 cut(s) 497
NspI RCATGY 1 cut(s) 496
NspV TTCGAA 1 cut(s) 455
PceI AGGCCT 1 cut(s) 604
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 4 cut(s) 59, 90, 209, 482
PspN4I GGNNCC 3 cut(s) 199, 352, 399
PspPI GGNCC 1 cut(s) 290
PsrI GAACNNNNNNTAC 2 cut(s) 624, 656
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 181, 228, 611
RsaNI GTAC 3 cut(s) 180, 227, 610
SaqAI TTAA 1 cut(s) 464
Sau3AI GATC 3 cut(s) 64, 145, 654
Sau96I GGNCC 1 cut(s) 290
SduI GDGCHC 2 cut(s) 380, 511
SetI ASST 5 cut(s) 238, 295, 446, 633, 738
SfaNI GCATC 2 cut(s) 14, 177
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 598, 702
SmoI CTYRAG 2 cut(s) 598, 702
Sse9I AATT 4 cut(s) 45, 371, 636, 715
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 237
StuI AGGCCT 1 cut(s) 604
StyI CCWWGG 1 cut(s) 337
TaiI ACGT 1 cut(s) 633
TaqI TCGA 2 cut(s) 8, 455
TasI AATT 4 cut(s) 45, 371, 636, 715
TatI WGTACW 2 cut(s) 226, 609
TfiI GAWTC 4 cut(s) 59, 90, 209, 482
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 120, 258, 285, 772
TspRI CASTG 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 290
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 2 cut(s) 344, 770
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.