Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015169

Physical Location & Seq

Genomic Coordinates Forward (+)

60472186 .. 60483314

Gene Structure 11129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG416400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCCCTTATCACGGGTCAGATCCAATCTCTCCCTCCCTCACCACCCCTTTCACCTGTATTACCACAACAACCCGGACCTCCAATCAATGTTGGTACTCGGTTCAAGGATGATAACCGTAAAGGTTCGACATTGCAAACACAAGAAACTAGCAATGAAGTTTCAACACAAACCAACATTGAAACTAAGCAATCCGAAGGTGTGAATGAAAGCACCAAAACACAACTACCAGCGGACACAACAATAGTATCGAAGTCACCAACCAATACGGATCAACCTCAGAGCCAGCGTAGGGTCCTCAATTTTTTCAGTTCGAAAAGATTAAACTTGTGCATAGTAGAATCAGAAAACATGAGAATTGTGTGTTCTCTCATAATAGCTTTGTTGGTAGTCTTGTCTTACGTTGATTACACATTGTTTGGAATGAACATAGTGAACTCGGAGAGTGTCGTGGCCTCGAGGCCTCTATACATTATTTTGCTGACTGACATAACAGTTGTGATGGCGCGATTAGTGTACTTCAGGGAGGCAGACGAAGAAGAAAGAATGGTGAGTAGTAGTCAAGATAACGAGGGACACAGTTGGGCTGGAGCAGTTAAGCTTTTGGAGAGGGGTTTGGTGGTCTATCAAGCCATTCGTGGGATTTTCATAGATTTTAGTGTTTATGCTGTGGTTTTCTACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.33

Weight (kDa)

5.13

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52343
fragaria_vesca	FvH4_6g31220 FvH4_6g31220
malus_domestica	MD17G1194800.v1.1
prunus_persica	Prupe.3G070800_v2.0.a1
pyrus_communis	pycom17g20060
rosa_chinensis	RchiOBHm_Chr2g0137891
rosa_laevigata	RLG00000019688
rosa_multiflora	Rmu_sc0002170.1_g000022
rosa_roxburghii	Rroxscaffold_2G00106670
rosa_rugosa	Rorug02G0348000
rosa_samantha	Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana	Rw2G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	457
AccII	CGCG	1 cut(s)	508
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	2 cut(s)	16, 279
AcuI	CTGAAG	1 cut(s)	505
AfaI	GTAC	2 cut(s)	97, 518
AfiI	CCNNNNNNNGG	3 cut(s)	13, 292, 639
AgsI	TTSAA	3 cut(s)	106, 165, 182
AluBI	AGCT	2 cut(s)	380, 601
AluI	AGCT	2 cut(s)	380, 601
AlwI	GGATC	2 cut(s)	16, 279
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	3 cut(s)	3, 453, 461
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	3 cut(s)	4, 77, 295
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	4 cut(s)	33, 45, 249, 562
AsuII	TTCGAA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	2 cut(s)	77, 295
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BccI	CCATC	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	2 cut(s)	77, 295
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	3 cut(s)	4, 77, 295
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 292, 639
Bse3DI	GCAATG	2 cut(s)	131, 160
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	3 cut(s)	13, 292, 639
BseMI	GCAATG	2 cut(s)	131, 160
BseMII	CTCAG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	3 cut(s)	5, 455, 463
BsiHKCI	CYCGRG	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	3 cut(s)	13, 292, 639
BsmFI	GGGAC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	5, 455, 463
BsoBI	CYCGRG	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	21, 271
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	5, 455, 463
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	16, 279
BspT104I	TTCGAA	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	131, 160
BssMI	GATC	2 cut(s)	21, 271
Bst4CI	ACNGT	3 cut(s)	119, 496, 581
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	186, 279
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	2 cut(s)	24, 274
BstMBI	GATC	2 cut(s)	21, 271
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	5, 455, 463
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	3 cut(s)	4, 77, 295
Csp6I	GTAC	2 cut(s)	96, 517
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	8 cut(s)	5, 285, 380, 455, 463, 587, 601, 632
CviKI_1	RGCY	8 cut(s)	5, 285, 380, 455, 463, 587, 601, 632
CviQI	GTAC	2 cut(s)	96, 517
DdeI	CTNAG	2 cut(s)	186, 279
DpnI	GATC	2 cut(s)	23, 273
DpnII	GATC	2 cut(s)	21, 271
Eco147I	AGGCCT	1 cut(s)	463
Eco47I	GGWCC	2 cut(s)	77, 295
Eco57I	CTGAAG	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	295
FaeI	CATG	1 cut(s)	355
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	1 cut(s)	351
FokI	GGATG	1 cut(s)	122
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	5, 455, 463
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	4 cut(s)	33, 45, 249, 562
Hpy166II	GTNNAC	2 cut(s)	436, 517
Hpy188I	TCNGA	5 cut(s)	21, 196, 282, 346, 442
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	2 cut(s)	436, 517
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	3 cut(s)	119, 496, 581
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	2 cut(s)	136, 333
HpyF3I	CTNAG	2 cut(s)	186, 279
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	2 cut(s)	21, 271
LmnI	GCTCC	1 cut(s)	590
LpnPI	CCDG	6 cut(s)	69, 88, 243, 299, 508, 573
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	2 cut(s)	23, 273
MboI	GATC	2 cut(s)	21, 271
MboII	GAAGA	2 cut(s)	548, 551
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	2 cut(s)	301, 357
MseI	TTAA	2 cut(s)	323, 597
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	508
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	21, 271
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	457
PceI	AGGCCT	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	3 cut(s)	4, 77, 295
PspPPI	RGGWCCY	1 cut(s)	295
PspXI	VCTCGAGB	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	2 cut(s)	97, 518
RsaNI	GTAC	2 cut(s)	96, 517
SaqAI	TTAA	2 cut(s)	323, 597
Sau3AI	GATC	2 cut(s)	21, 271
Sau96I	GGNCC	3 cut(s)	4, 77, 295
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	8 cut(s)	58, 82, 127, 202, 280, 382, 405, 603
Sfr274I	CTCGAG	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	2 cut(s)	77, 295
SlaI	CTCGAG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	2 cut(s)	301, 357
SseBI	AGGCCT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	119, 496, 581
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	4 cut(s)	128, 251, 314, 458
TasI	AATT	2 cut(s)	301, 357
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	323, 597
Tru9I	TTAA	2 cut(s)	323, 597
TseFI	GTSAC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	171, 222, 440, 637
TspGWI	ACGGA	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	77, 295
XhoI	CTCGAG	1 cut(s)	457
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.