Rh2BG401600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
56982063 .. 56984270
2208 bp
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UTR
Exon/CDS
Intron
Rh2BG401600.1

Sequence Viewer

Length: 348 bp
ATGGCCCTTATCACGGGTCAGATCCAATCTCTCCCTCCCTCACCACCCCTTTCACCTGTATTACCACAACAACCCGGACCTCCAATCAATGTTGGTACTCGGATCAAGGATGTTAACCGTGAAGGTTCGACATTGCAGACACAAGAAGCTAGCAATAAAGTTCCAACACAAACCAACATTGAAACTAAGCAATCCGAAGGTGTGGATGGAAGCACCAAAACACAACTACCAGCGGACACAACAATAGTTTCGAAGTCACCAACCAATACGGATCAACCTCAGAGCCAGCGTAGGACGGAAGCGTGGAATCGGTTTATAGAATTGGGAGTGTGCAACGGTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.32

Weight (kDa)

6.19

Isoelectric Point (pI)

77.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52343
fragaria_vesca FvH4_6g31220 FvH4_6g31220
malus_domestica MD17G1194800.v1.1
prunus_persica Prupe.3G070800_v2.0.a1
pyrus_communis pycom17g20060
rosa_chinensis RchiOBHm_Chr2g0137891
rosa_laevigata RLG00000019688
rosa_multiflora Rmu_sc0002170.1_g000022
rosa_roxburghii Rroxscaffold_2G00106670
rosa_rugosa Rorug02G0348000
rosa_samantha Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana Rw2G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AclWI GGATC 3 cut(s) 16, 110, 279
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 13
AgsI TTSAA 2 cut(s) 182, 342
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 3 cut(s) 16, 110, 279
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 2 cut(s) 4, 77
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 33, 45, 249
AsuII TTCGAA 1 cut(s) 251
AsuNHI GCTAGC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 77
BccI CCATC 1 cut(s) 200
BcnI CCSGG 1 cut(s) 75
BfaI CTAG 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 4, 77
BmrFI CCNGG 1 cut(s) 75
BmtI GCTAGC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 131
BseGI GGATG 2 cut(s) 115, 211
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 13
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 3 cut(s) 21, 102, 271
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 153
BspPI GGATC 3 cut(s) 16, 110, 279
BspT104I TTCGAA 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 131
BssMI GATC 3 cut(s) 21, 102, 271
Bst4CI ACNGT 2 cut(s) 119, 338
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 151, 287
BstDEI CTNAG 2 cut(s) 186, 279
BstF5I GGATG 2 cut(s) 115, 211
BstKTI GATC 3 cut(s) 24, 105, 274
BstMBI GATC 3 cut(s) 21, 102, 271
BstSCI CCNGG 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 115, 211
Cac8I GCNNGC 2 cut(s) 151, 287
Cfr13I GGNCC 2 cut(s) 4, 77
Csp6I GTAC 1 cut(s) 96
CviJI RGCY 3 cut(s) 5, 149, 285
CviKI_1 RGCY 3 cut(s) 5, 149, 285
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 2 cut(s) 186, 279
DpnI GATC 3 cut(s) 23, 104, 273
DpnII GATC 3 cut(s) 21, 102, 271
Eco47I GGWCC 1 cut(s) 77
FaiI YATR 1 cut(s) 317
FokI GGATG 2 cut(s) 122, 218
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 75
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 307
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 75
HphI GGTGA 3 cut(s) 33, 45, 249
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 21, 102, 196, 282
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 116, 191
HpyCH4III ACNGT 2 cut(s) 119, 338
HpyCH4V TGCA 2 cut(s) 136, 333
HpyF3I CTNAG 2 cut(s) 186, 279
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 21, 102, 271
LpnPI CCDG 4 cut(s) 69, 88, 243, 299
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 255
MalI GATC 3 cut(s) 23, 104, 273
MboI GATC 3 cut(s) 21, 102, 271
MflI RGATCY 1 cut(s) 21
MluCI AATT 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 4 cut(s) 45, 49, 90, 288
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 75
NciI CCSGG 1 cut(s) 75
NdeII GATC 3 cut(s) 21, 102, 271
NheI GCTAGC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 255
NspV TTCGAA 1 cut(s) 251
PfeI GAWTC 1 cut(s) 307
PspPI GGNCC 2 cut(s) 4, 77
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 114
Sau3AI GATC 3 cut(s) 21, 102, 271
Sau96I GGNCC 2 cut(s) 4, 77
ScrFI CCNGG 1 cut(s) 75
SetI ASST 6 cut(s) 58, 82, 127, 151, 202, 280
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 1 cut(s) 77
Sse9I AATT 1 cut(s) 320
SsiI CCGC 1 cut(s) 233
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 119, 338
TaqI TCGA 2 cut(s) 128, 251
TasI AATT 1 cut(s) 320
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 255
TspGWI ACGGA 2 cut(s) 284, 311
VpaK11BI GGWCC 1 cut(s) 77
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.