RchiOBHm_Chr2g0137891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015169
Physical Location & Seq
Forward (+)
55704828 .. 55706405
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50860

Sequence Viewer

Length: 792 bp
ATGTCGACCGGTGAAGATGAGATGGCAAAGAAATTGGCGAGAGAAGAAAGAAGAAGAAGAATTGCAGAAAGAGGATCGGATCGCATGGCCCTTATCACGGGTCAGATCCAATCTCTCCCTCCCTCACCACCCCTTTCACCTGTATTACCACAACAACCCGGACCTCCAATCAATGTTGGTACTCGGATCAAGGATGATAACCGTGAAGGTTCGACATTGCAGACACAAGAAGCTAGCAATAAAGTTCCAACACAAACCAACATTGAAACTAAGCAATCCGAAGGTGTGGATGGAAGCACCAAAACACAACTACCAGCGGACACAACAATAGTTTCGAAGTCACCAACCAATACGGATCAACCTCAGAGCCAGCGTAGGGTCCTCAATTTTTTCAGTTCGAAAAGATTAAACTTGTGCATAGTAGAATCAGAAAACATGAGAATTGTGTGTTCTCTCATAATAGCTTTGTTGGTAGTCTTGTCTTACGTTGATTACGCATTGTTTGGAATGAACATAGTGAACTCGGAGAGTGTCGTGGCCTCGAGGCCTCTATACATTATTTTGCTGACTGATGTAACAGTTGTGATGGCGCGATTAGTGTACTTCAGGGAGGCAGACGAAGAAGAAAGAATGGTGAGTAGTAGTCAAGATAATGAGGGACACAGTTGGGCTGGAGCAGTTAAGCTTTTGGAGAGGGGTTTGGTGGTCTATCAAGCCATTCGTGGGATTTTCATAGATTTTAGTGTTTATGCTGTGGTTGTTATTTGTGGCCTCTCTTTTTTTATAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.14

Weight (kDa)

5.65

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52343
fragaria_vesca FvH4_6g31220 FvH4_6g31220
malus_domestica MD17G1194800.v1.1
prunus_persica Prupe.3G070800_v2.0.a1
pyrus_communis pycom17g20060
rosa_chinensis RchiOBHm_Chr2g0137891
rosa_laevigata RLG00000019688
rosa_multiflora Rmu_sc0002170.1_g000022
rosa_roxburghii Rroxscaffold_2G00106670
rosa_rugosa Rorug02G0348000
rosa_samantha Rh2AG394400 Rh2BG401600 Rh2CG381100 Rh2DG416400
rosa_wichuraiana Rw2G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 785
AbsI CCTCGAGG 1 cut(s) 541
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 592
AciI CCGC 1 cut(s) 317
AclWI GGATC 5 cut(s) 82, 87, 100, 194, 363
AcuI CTGAAG 1 cut(s) 589
AfaI GTAC 2 cut(s) 181, 602
AfiI CCNNNNNNNGG 3 cut(s) 97, 376, 723
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 266
AluBI AGCT 3 cut(s) 233, 464, 685
AluI AGCT 3 cut(s) 233, 464, 685
AlwI GGATC 5 cut(s) 82, 87, 100, 194, 363
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 4 cut(s) 87, 537, 545, 769
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 3 cut(s) 88, 161, 379
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 5 cut(s) 23, 117, 129, 333, 646
AsuII TTCGAA 2 cut(s) 335, 398
AsuNHI GCTAGC 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 2 cut(s) 161, 379
BccI CCATC 3 cut(s) 16, 284, 580
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 2 cut(s) 161, 379
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 3 cut(s) 88, 161, 379
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 159
BmtI GCTAGC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 693
Bpu14I TTCGAA 2 cut(s) 335, 398
BpuMI CCSGG 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 376, 723
Bse118I RCCGGY 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 215
BseGI GGATG 2 cut(s) 199, 295
BseLI CCNNNNNNNGG 3 cut(s) 97, 376, 723
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 592
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 89, 539, 547, 771
BshTI ACCGGT 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 2 cut(s) 9, 159
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 3 cut(s) 97, 376, 723
BsmFI GGGAC 1 cut(s) 672
BsnI GGCC 4 cut(s) 89, 539, 547, 771
BsoBI CYCGRG 1 cut(s) 541
Bsp119I TTCGAA 2 cut(s) 335, 398
Bsp143I GATC 5 cut(s) 74, 79, 105, 186, 355
BspACI CCGC 1 cut(s) 317
BspANI GGCC 4 cut(s) 89, 539, 547, 771
BspCNI CTCAG 1 cut(s) 376
BspFNI CGCG 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 380
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 5 cut(s) 82, 87, 100, 194, 363
BspT104I TTCGAA 2 cut(s) 335, 398
BsrDI GCAATG 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 5 cut(s) 74, 79, 105, 186, 355
Bst4CI ACNGT 3 cut(s) 203, 580, 665
BstBI TTCGAA 2 cut(s) 335, 398
BstC8I GCNNGC 2 cut(s) 235, 371
BstDEI CTNAG 2 cut(s) 270, 363
BstF5I GGATG 2 cut(s) 199, 295
BstFNI CGCG 1 cut(s) 592
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 5 cut(s) 77, 82, 108, 189, 358
BstMBI GATC 5 cut(s) 74, 79, 105, 186, 355
BstMCI CGRYCG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 157
BstUI CGCG 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 4 cut(s) 89, 539, 547, 771
BtsCI GGATG 2 cut(s) 199, 295
Cac8I GCNNGC 2 cut(s) 235, 371
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 88, 161, 379
Csp6I GTAC 2 cut(s) 180, 601
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 2 cut(s) 85, 436
CviQI GTAC 2 cut(s) 180, 601
DdeI CTNAG 2 cut(s) 270, 363
DpnI GATC 5 cut(s) 76, 81, 107, 188, 357
DpnII GATC 5 cut(s) 74, 79, 105, 186, 355
Eco147I AGGCCT 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 161, 379
Eco57I CTGAAG 1 cut(s) 589
Eco88I CYCGRG 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 379
FaeI CATG 2 cut(s) 88, 439
FaiI YATR 9 cut(s) 86, 419, 437, 458, 515, 553, 734, 750, 785
FaqI GGGAC 1 cut(s) 672
FatI CATG 2 cut(s) 84, 435
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 206, 302
FspBI CTAG 1 cut(s) 234
GlaI GCGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 4 cut(s) 89, 539, 547, 771
HapII CCGG 2 cut(s) 9, 159
HhaI GCGC 1 cut(s) 592
Hin1II CATG 2 cut(s) 88, 439
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 1 cut(s) 425
HpaII CCGG 2 cut(s) 9, 159
HphI GGTGA 5 cut(s) 23, 117, 129, 333, 646
Hpy166II GTNNAC 3 cut(s) 6, 520, 601
Hpy188I TCNGA 7 cut(s) 79, 105, 186, 280, 366, 430, 526
Hpy188III TCNNGA 1 cut(s) 647
Hpy8I GTNNAC 3 cut(s) 6, 520, 601
HpyAV CCTTC 2 cut(s) 200, 275
HpyCH4III ACNGT 3 cut(s) 203, 580, 665
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 3 cut(s) 65, 220, 417
HpyF3I CTNAG 2 cut(s) 270, 363
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 2 cut(s) 88, 439
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 5 cut(s) 74, 79, 105, 186, 355
LmnI GCTCC 1 cut(s) 674
LpnPI CCDG 7 cut(s) 22, 153, 172, 327, 383, 592, 657
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 2 cut(s) 339, 574
MalI GATC 5 cut(s) 76, 81, 107, 188, 357
MboI GATC 5 cut(s) 74, 79, 105, 186, 355
MboII GAAGA 7 cut(s) 26, 56, 63, 66, 69, 632, 635
MflI RGATCY 1 cut(s) 105
MluCI AATT 4 cut(s) 32, 60, 385, 441
MmeI TCCRAC 1 cut(s) 272
MseI TTAA 2 cut(s) 407, 681
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 9, 159
MspR9I CCNGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 592
NciI CCSGG 1 cut(s) 159
NdeII GATC 5 cut(s) 74, 79, 105, 186, 355
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 88, 439
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 339
NspV TTCGAA 2 cut(s) 335, 398
PaeR7I CTCGAG 1 cut(s) 541
PceI AGGCCT 1 cut(s) 547
PfeI GAWTC 1 cut(s) 425
PinAI ACCGGT 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 379
PsiI TTATAA 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 3 cut(s) 88, 161, 379
PspPPI RGGWCCY 1 cut(s) 379
PspXI VCTCGAGB 1 cut(s) 541
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 2 cut(s) 181, 602
RsaNI GTAC 2 cut(s) 180, 601
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 407, 681
Sau3AI GATC 5 cut(s) 74, 79, 105, 186, 355
Sau96I GGNCC 3 cut(s) 88, 161, 379
ScrFI CCNGG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 541
SfuI TTCGAA 2 cut(s) 335, 398
SinI GGWCC 2 cut(s) 161, 379
SlaI CTCGAG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 4 cut(s) 32, 60, 385, 441
SseBI AGGCCT 1 cut(s) 547
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 234
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 3 cut(s) 203, 580, 665
TaiI ACGT 1 cut(s) 489
TaqI TCGA 5 cut(s) 5, 212, 335, 398, 542
TasI AATT 4 cut(s) 32, 60, 385, 441
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 407, 681
Tru9I TTAA 2 cut(s) 407, 681
TseFI GTSAC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 2 cut(s) 524, 721
TspGWI ACGGA 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 161, 379
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.