Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014770

Physical Location & Seq

Genomic Coordinates Forward (+)

24397657 .. 24401768

Gene Structure 4112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31240.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCCCGACCTGGAAACAAGATCATACAAGCCAAATTGGTGCTTCTAGGAGACATGGGAACTGGGAAAACAAGTTTGGTACTAAGATTTGTCAAAGGCCAGTTTTTTGATCACCAGGAACCAACCATAGGAGCAGCCTTTTTCACTCAGATTCTATCTTTAAGTGAAGCCACTGTTAAATTTGATATTTGGGACACAGCAGGACAAGAACGATACCATAGCTTGGCTCCTATGTACTATCGCGGTGCAGCAGCAGCTGTAGTTGTATATGACATCTCAAGCACGGATACATTCACTCGAGCTAAAAAATGGGTTCAAGAATTGCAAAGGCAAGGGAATTTAAATTTGGTGATGGCATTGGTTGCAAACAAGTCTGACTTGGAGGCAAAAAGGGAGGTGGACAATGAGGAAGGGGAGCAATTTGCACAAGATAATGGGATGTTTTACATGGAAACTTCAGCCAAAACCTCACAGAATATTAATGAACTTTTCCACGAAATAGCAAAGAGATTAGCAAGAGCTTCCCCAGCAAAGCCTATTGGAATGACTCTAAACAATGAAACACGAGATAGAAGAAGAAAATCATTTTGTTGCTTGGTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

202

Amino Acids

22.56

Weight (kDa)

8.85

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	10 - 169	4.5e-16	ADP-ribosylation factor family
Ras	PF00071	12 - 171	1.6e-59	Ras family
Roc	PF08477	12 - 126	2.2e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014770)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31240 FvH4_6g31240
malus_domestica	MD09G1212500.v1.1 MD17G1194500.v1.1
prunus_persica	Prupe.3G070500_v2.0.a1
pyrus_communis	pycom09g12980 pycom17g20030
rosa_chinensis	RchiOBHm_Chr2g0137961
rosa_laevigata	RLG00000019694
rosa_multiflora	Rmu_sc0002170.1_g000053
rosa_roxburghii	Rroxscaffold_2G00106620
rosa_rugosa	Rorug02G0348300 Rorug02G0348400 Rorug02G0348500
rosa_samantha	Rh2AG394800 Rh2CG381400
rosa_wichuraiana	Rw2G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	243
AcsI	RAATTY	3 cut(s)	179, 337, 343
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	2 cut(s)	81, 236
AfiI	CCNNNNNNNGG	2 cut(s)	128, 223
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	10, 114
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 329, 361
AluBI	AGCT	4 cut(s)	222, 257, 302, 521
AluI	AGCT	4 cut(s)	222, 257, 302, 521
Alw26I	GTCTC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	3, 97
ApeKI	GCWGC	4 cut(s)	134, 248, 251, 254
ApoI	RAATTY	3 cut(s)	179, 337, 343
AseI	ATTAAT	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	104, 361
AvaI	CYCGRG	1 cut(s)	297
BauI	CACGAG	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	146, 260, 263, 266
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	2 cut(s)	12, 116
BciVI	GTATCC	1 cut(s)	280
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	4 cut(s)	135, 249, 252, 255
BlsI	GCNGC	4 cut(s)	136, 250, 253, 256
Bme1390I	CCNGG	2 cut(s)	12, 116
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	120, 228
BmrFI	CCNGG	2 cut(s)	12, 116
BmrI	ACTGGG	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 223
Bse1I	ACTGG	2 cut(s)	67, 100
BseBI	CCWGG	2 cut(s)	12, 116
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	128, 223
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	67, 100
BseXI	GCAGC	4 cut(s)	146, 260, 263, 266
BseYI	CCCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	5, 99
BsiHKCI	CYCGRG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	128, 223
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	5, 99
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	21, 109
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	2 cut(s)	5, 99
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	120, 228
BsrI	ACTGG	2 cut(s)	67, 100
BssMI	GATC	2 cut(s)	21, 109
BssSI	CACGAG	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	12, 116
Bst4CI	ACNGT	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	83, 147
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	24, 112
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	21, 109
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 362, 527
BstNI	CCWGG	2 cut(s)	12, 116
BstSCI	CCNGG	2 cut(s)	10, 114
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	146, 260, 263, 266
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	5, 99
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	80, 235
CviAII	CATG	2 cut(s)	55, 448
CviQI	GTAC	2 cut(s)	80, 235
DdeI	CTNAG	2 cut(s)	83, 147
DpnI	GATC	2 cut(s)	23, 111
DpnII	GATC	2 cut(s)	21, 109
DraI	TTTAAA	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	10, 114
FaeI	CATG	2 cut(s)	58, 451
FaiI	YATR	8 cut(s)	26, 56, 128, 219, 233, 268, 270, 449
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	54, 447
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	135, 249, 252, 255
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	4 cut(s)	135, 249, 252, 255
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	4 cut(s)	135, 249, 252, 255
GsaI	CCCAGC	1 cut(s)	530
HaeIII	GGCC	2 cut(s)	5, 99
Hin1II	CATG	2 cut(s)	58, 451
HinfI	GANTC	2 cut(s)	151, 547
HphI	GGTGA	2 cut(s)	104, 361
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	150, 376
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	248, 325, 365, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 362, 527
HpyF3I	CTNAG	2 cut(s)	83, 147
Hsp92II	CATG	2 cut(s)	58, 451
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	21, 109
LmnI	GCTCC	3 cut(s)	131, 232, 415
LpnPI	CCDG	7 cut(s)	24, 48, 101, 113, 128, 186, 540
Lsp1109I	GCAGC	4 cut(s)	146, 260, 263, 266
MaeI	CTAG	1 cut(s)	47
MalI	GATC	2 cut(s)	23, 111
MboI	GATC	2 cut(s)	21, 109
MboII	GAAGA	2 cut(s)	585, 588
MluCI	AATT	6 cut(s)	35, 179, 320, 337, 343, 419
MlyI	GAGTC	1 cut(s)	541
MnlI	CCTC	4 cut(s)	376, 388, 400, 478
MseI	TTAA	4 cut(s)	161, 177, 341, 480
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	12, 116
MvaI	CCWGG	2 cut(s)	12, 116
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	254, 362, 527
NdeII	GATC	2 cut(s)	21, 109
NlaIII	CATG	2 cut(s)	58, 451
NlaIV	GGNNCC	2 cut(s)	120, 228
PaeR7I	CTCGAG	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	136, 250, 253, 256
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PshBI	ATTAAT	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	10, 114
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	2 cut(s)	10, 114
PspN4I	GGNNCC	2 cut(s)	120, 228
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	81, 236
RsaNI	GTAC	2 cut(s)	80, 235
SaqAI	TTAA	4 cut(s)	161, 177, 341, 480
SatI	GCNGC	4 cut(s)	135, 249, 252, 255
Sau3AI	GATC	2 cut(s)	21, 109
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	12, 116
SetI	ASST	7 cut(s)	13, 224, 259, 304, 399, 470, 523
SfcI	CTRYAG	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmiI	ATTTAAAT	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	277, 297
SmoI	CTYRAG	2 cut(s)	277, 297
Sse9I	AATT	6 cut(s)	35, 179, 320, 337, 343, 419
SsiI	CCGC	1 cut(s)	243
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	10, 114
SwaI	ATTTAAAT	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	298
TasI	AATT	6 cut(s)	35, 179, 320, 337, 343, 419
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	4 cut(s)	161, 177, 341, 480
Tru9I	TTAA	4 cut(s)	161, 177, 341, 480
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	4 cut(s)	134, 248, 251, 254
TspDTI	ATGAA	2 cut(s)	498, 573
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	3 cut(s)	179, 337, 343
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.