Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014770

Physical Location & Seq

Genomic Coordinates Reverse (-)

20837648 .. 20841544

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1212500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCAGGCCTGGCAACAAGATCATACAAGCCAAACTGGTACTTCTGGGGGACATGGGAACTGGGAAAACCAGTTTGGTGCTAAGATTTGTCAAAGGCCAGTTTTTCGATAACCAGGAACCAACCATTGGAGCAGCTTTTTTCACTCAGATATTGTCTTTAAGTGAAGCCACTGTGAAGTTTGACATATGGGACACCGCAGGACAAGAACGATACCATAGCTTGGCTCCTATGTACTATCGTGGTGCAGCAGCAGCAGTAGTCGCGTATGACATCTCAAGCGCGGATACATTTACTCGAGCCAAAAAATGGGTTCAAGAATTGCAGAGGCAAGGGAATTTAAACTTGGTGATGGCATTGGTTGGGAACAAGTGCGACTTGGAGGCGAAAAGGGAGGTCGAGAGTGAGGAAGGGGAGCAATTTGCTCAAGAGAATGGGATGTTTTTCTTGGAAACATCAGCCAAAACCGCACAGAACATCAACGAGCTTTTCCATGAAATAGCAAAGAGATTAGCAAGAGCTTGCCCCCCAAGGCCTGCTGGAGTGAATCTAAACAGCGTAACACGAGACAGAAGAAGAAAGGCGTTTTGCTGCTTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

201

Amino Acids

22.27

Weight (kDa)

8.91

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	10 - 169	1.5e-14	ADP-ribosylation factor family
Ras	PF00071	12 - 171	3.1e-60	Ras family
Roc	PF08477	12 - 126	3.2e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014770)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31240 FvH4_6g31240
malus_domestica	MD09G1212500.v1.1 MD17G1194500.v1.1
prunus_persica	Prupe.3G070500_v2.0.a1
pyrus_communis	pycom09g12980 pycom17g20030
rosa_chinensis	RchiOBHm_Chr2g0137961
rosa_laevigata	RLG00000019694
rosa_multiflora	Rmu_sc0002170.1_g000053
rosa_roxburghii	Rroxscaffold_2G00106620
rosa_rugosa	Rorug02G0348300 Rorug02G0348400 Rorug02G0348500
rosa_samantha	Rh2AG394800 Rh2CG381400
rosa_wichuraiana	Rw2G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	128, 223, 309
AccII	CGCG	2 cut(s)	266, 284
AciI	CCGC	3 cut(s)	198, 284, 468
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	2 cut(s)	42, 236
AfiI	CCNNNNNNNGG	3 cut(s)	128, 223, 309
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	3 cut(s)	5, 10, 114
AjuI	GAANNNNNNNTTGG	6 cut(s)	59, 91, 111, 143, 329, 361
AluBI	AGCT	4 cut(s)	137, 222, 487, 521
AluI	AGCT	4 cut(s)	137, 222, 487, 521
Alw26I	GTCTC	1 cut(s)	561
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	4 cut(s)	3, 8, 97, 533
ApeKI	GCWGC	5 cut(s)	134, 248, 251, 254, 591
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	146, 260, 263, 266, 578
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	3 cut(s)	7, 12, 116
BciVI	GTATCC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	280
BisI	GCNGC	5 cut(s)	135, 249, 252, 255, 592
BlsI	GCNGC	5 cut(s)	136, 250, 253, 256, 593
Bme1390I	CCNGG	3 cut(s)	7, 12, 116
BmeT110I	CYCGRG	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	120, 228
BmrFI	CCNGG	3 cut(s)	7, 12, 116
BmrI	ACTGGG	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	262, 411
BsaJI	CCNNGG	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 223, 309
Bse1I	ACTGG	4 cut(s)	42, 67, 72, 100
BseBI	CCWGG	3 cut(s)	7, 12, 116
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	128, 223, 309
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	4 cut(s)	42, 67, 72, 100
BseXI	GCAGC	5 cut(s)	146, 260, 263, 266, 578
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	2 cut(s)	266, 284
BshFI	GGCC	4 cut(s)	5, 10, 99, 535
BsiHKCI	CYCGRG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	65, 206
BslI	CCNNNNNNNGG	3 cut(s)	128, 223, 309
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	2 cut(s)	65, 206
BsnI	GGCC	4 cut(s)	5, 10, 99, 535
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	198, 284, 468
BspANI	GGCC	4 cut(s)	5, 10, 99, 535
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	2 cut(s)	266, 284
BspLI	GGNNCC	2 cut(s)	120, 228
BsrI	ACTGG	4 cut(s)	42, 67, 72, 100
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	530
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	3 cut(s)	7, 12, 116
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	523, 537
BstDEI	CTNAG	2 cut(s)	83, 147
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	2 cut(s)	266, 284
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 263, 467
BstNI	CCWGG	3 cut(s)	7, 12, 116
BstSCI	CCNGG	3 cut(s)	5, 10, 114
BstUI	CGCG	2 cut(s)	266, 284
BstV1I	GCAGC	5 cut(s)	146, 260, 263, 266, 578
BsuI	GTATCC	1 cut(s)	280
BsuRI	GGCC	4 cut(s)	5, 10, 99, 535
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	523, 537
CfoI	GCGC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	41, 235
CviAII	CATG	2 cut(s)	55, 494
CviQI	GTAC	2 cut(s)	41, 235
DdeI	CTNAG	2 cut(s)	83, 147
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
DraI	TTTAAA	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	530
Eco147I	AGGCCT	2 cut(s)	10, 535
Eco88I	CYCGRG	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	5, 10, 114
EcoT14I	CCWWGG	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	2 cut(s)	58, 497
FaiI	YATR	8 cut(s)	26, 56, 188, 190, 219, 233, 270, 495
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	2 cut(s)	65, 206
FatI	CATG	2 cut(s)	54, 493
FauNDI	CATATG	1 cut(s)	188
Fnu4HI	GCNGC	5 cut(s)	135, 249, 252, 255, 592
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	5 cut(s)	135, 249, 252, 255, 592
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	5 cut(s)	135, 249, 252, 255, 592
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	4 cut(s)	5, 10, 99, 535
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	2 cut(s)	58, 497
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	1 cut(s)	547
HphI	GGTGA	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	317, 400, 428
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	248, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 263, 467
HpyF3I	CTNAG	2 cut(s)	83, 147
Hsp92II	CATG	2 cut(s)	58, 497
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	131, 232, 415
Lsp1109I	GCAGC	5 cut(s)	146, 260, 263, 266, 578
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	2 cut(s)	585, 588
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	320, 337, 419
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	321, 376, 388, 400
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	161, 341
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	7, 12, 116
MvaI	CCWGG	3 cut(s)	7, 12, 116
MvnI	CGCG	2 cut(s)	266, 284
MwoI	GCNNNNNNNGC	3 cut(s)	254, 263, 467
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	2 cut(s)	58, 497
NlaIV	GGNNCC	2 cut(s)	120, 228
PaeR7I	CTCGAG	1 cut(s)	297
PceI	AGGCCT	2 cut(s)	10, 535
PfeI	GAWTC	1 cut(s)	547
PflMI	CCANNNNNTGG	3 cut(s)	128, 223, 309
PkrI	GCNGC	5 cut(s)	136, 250, 253, 256, 593
Psp6I	CCWGG	3 cut(s)	5, 10, 114
PspGI	CCWGG	3 cut(s)	5, 10, 114
PspN4I	GGNNCC	2 cut(s)	120, 228
PspXI	VCTCGAGB	1 cut(s)	297
RsaI	GTAC	2 cut(s)	42, 236
RsaNI	GTAC	2 cut(s)	41, 235
SaqAI	TTAA	2 cut(s)	161, 341
SatI	GCNGC	5 cut(s)	135, 249, 252, 255, 592
Sau3AI	GATC	1 cut(s)	21
ScrFI	CCNGG	3 cut(s)	7, 12, 116
SetI	ASST	5 cut(s)	139, 224, 399, 489, 523
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	3 cut(s)	277, 297, 426
SmoI	CTYRAG	3 cut(s)	277, 297, 426
Sse9I	AATT	3 cut(s)	320, 337, 419
SseBI	AGGCCT	2 cut(s)	10, 535
SsiI	CCGC	3 cut(s)	198, 284, 468
StuI	AGGCCT	2 cut(s)	10, 535
StyD4I	CCNGG	3 cut(s)	5, 10, 114
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	108, 298, 399
TasI	AATT	3 cut(s)	320, 337, 419
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	161, 341
Tru9I	TTAA	2 cut(s)	161, 341
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	5 cut(s)	134, 248, 251, 254, 591
TspDTI	ATGAA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	3 cut(s)	128, 223, 309
XapI	RAATTY	1 cut(s)	337
XhoI	CTCGAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.