Rorug02G0348400

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014770
Physical Location & Seq
Reverse (-)
43680865 .. 43683579
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0348400.1

Sequence Viewer

Length: 558 bp
ATGGTAGCCCAGACATTGGTCTTTTCTTTCGATCGCAAAACATATCGATTCATTCGATCCCCAAAACAAACAGACCCAGCTCTTCACTCGTCTTCTGCTCTTCGCTCCCTCCCCCGCCCCCAAGCCACCGCAGCTGCACCGCACCTCTGCTCCACGCCTCCACTGCGTCTCTACCTCAGACTCCCTCTGGTCCGCGCCTCTGCCTCTAAACGATTTAGAAGCATTCTGTTCAATTTAGATGCATTCTGTTCAGATGCAGATGCATTCTGTCTAGGAGGCTCTCGCTATATTGTGTTGCATGTGGTGTATCAGGAAGAGATACTGATTGGTTTATGCATTTGTCAGGTTGCAGTCATTTACTTCCATGATGAATTTACTATGTTAAAAGGCGTTGGACTCTTCACAATTATTCTTGGGGTGAGTTTATTCAACTGGTACAAGTATGAAAAACTAAAGAAGGGTCATACAAGTGAAGACGACATGGAGGAATCAGTCGAGATGAATGCTGCAAAATATGTTATTCTTGAAGAGACAGATGAGCAAGATGATGGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

185

Amino Acids

20.95

Weight (kDa)

6.2

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31240 FvH4_6g31240
malus_domestica MD09G1212500.v1.1 MD17G1194500.v1.1
prunus_persica Prupe.3G070500_v2.0.a1
pyrus_communis pycom09g12980 pycom17g20030
rosa_chinensis RchiOBHm_Chr2g0137961
rosa_laevigata RLG00000019694
rosa_multiflora Rmu_sc0002170.1_g000053
rosa_roxburghii Rroxscaffold_2G00106620
rosa_rugosa Rorug02G0348300 Rorug02G0348400 Rorug02G0348500
rosa_samantha Rh2AG394800 Rh2CG381400
rosa_wichuraiana Rw2G032290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 195
AciI CCGC 4 cut(s) 115, 129, 140, 193
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 232, 430, 527
AluBI AGCT 2 cut(s) 80, 134
AluI AGCT 2 cut(s) 80, 134
Alw26I GTCTC 2 cut(s) 173, 524
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 131, 134, 506
ApoI RAATTY 1 cut(s) 371
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 190
BbsI GAAGAC 2 cut(s) 84, 480
BbvI GCAGC 3 cut(s) 121, 143, 493
BccI CCATC 1 cut(s) 542
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BcoDI GTCTC 2 cut(s) 173, 524
BfaI CTAG 1 cut(s) 272
BisI GCNGC 3 cut(s) 132, 135, 507
BlsI GCNGC 3 cut(s) 133, 136, 508
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmsI GCATC 3 cut(s) 229, 244, 250
BoxI GACNNNNGTC 1 cut(s) 17
BpiI GAAGAC 2 cut(s) 84, 480
Bsa29I ATCGAT 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 437
BseCI ATCGAT 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 437
BseXI GCAGC 3 cut(s) 121, 143, 493
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 34
BshVI ATCGAT 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 173, 524
BsmBI CGTCTC 1 cut(s) 173
BsmI GAATGC 4 cut(s) 222, 242, 263, 508
Bsp143I GATC 2 cut(s) 31, 56
BspACI CCGC 4 cut(s) 115, 129, 140, 193
BspCNI CTCAG 1 cut(s) 189
BspDI ATCGAT 1 cut(s) 46
BspFNI CGCG 1 cut(s) 195
BspPI GGATC 1 cut(s) 51
BspQI GCTCTTC 2 cut(s) 87, 105
BsrI ACTGG 1 cut(s) 437
BssMI GATC 2 cut(s) 31, 56
Bst6I CTCTTC 5 cut(s) 87, 105, 309, 404, 522
BstDEI CTNAG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 34, 59
BstMAI GTCTC 2 cut(s) 173, 524
BstMBI GATC 2 cut(s) 31, 56
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 131, 163
BstNSI RCATGY 1 cut(s) 302
BstPAI GACNNNNGTC 1 cut(s) 17
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 121, 143, 493
BstV2I GAAGAC 2 cut(s) 84, 480
Bsu15I ATCGAT 1 cut(s) 46
BsuTUI ATCGAT 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 46
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 436
CviAII CATG 3 cut(s) 299, 365, 481
CviJI RGCY 5 cut(s) 8, 80, 125, 134, 279
CviKI_1 RGCY 5 cut(s) 8, 80, 125, 134, 279
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 33, 58
DpnII GATC 2 cut(s) 31, 56
Eam1104I CTCTTC 5 cut(s) 87, 105, 309, 404, 522
EarI CTCTTC 5 cut(s) 87, 105, 309, 404, 522
Eco47I GGWCC 1 cut(s) 190
EcoT22I ATGCAT 3 cut(s) 244, 265, 338
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 302, 368, 484
FatI CATG 3 cut(s) 298, 364, 480
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 3 cut(s) 132, 135, 507
Fsp4HI GCNGC 3 cut(s) 132, 135, 507
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 196
GluI GCNGC 3 cut(s) 132, 135, 507
GsaI CCCAGC 1 cut(s) 80
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 197
Hin1II CATG 3 cut(s) 302, 368, 484
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 4 cut(s) 48, 180, 396, 488
HphI GGTGA 1 cut(s) 430
Hpy188I TCNGA 2 cut(s) 179, 253
Hpy188III TCNNGA 3 cut(s) 311, 496, 524
HpyAV CCTTC 1 cut(s) 451
HpyCH4V TGCA 8 cut(s) 137, 242, 257, 263, 298, 336, 350, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 163
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 3 cut(s) 302, 368, 484
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 31, 56
LguI GCTCTTC 2 cut(s) 87, 105
LmnI GCTCC 2 cut(s) 110, 155
LpnPI CCDG 6 cut(s) 23, 90, 173, 296, 329, 418
Lsp1109I GCAGC 3 cut(s) 121, 143, 493
LweI GCATC 3 cut(s) 229, 244, 250
MaeI CTAG 1 cut(s) 272
MalI GATC 2 cut(s) 33, 58
MboI GATC 2 cut(s) 31, 56
MboII GAAGA 7 cut(s) 74, 84, 92, 326, 391, 485, 539
MluCI AATT 3 cut(s) 232, 371, 405
MlyI GAGTC 2 cut(s) 174, 390
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 9 cut(s) 119, 155, 168, 185, 195, 208, 214, 269, 478
Mph1103I ATGCAT 3 cut(s) 244, 265, 338
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 134
Mva1269I GAATGC 4 cut(s) 222, 242, 263, 508
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 131, 163
NdeII GATC 2 cut(s) 31, 56
NlaIII CATG 3 cut(s) 302, 368, 484
NsiI ATGCAT 3 cut(s) 244, 265, 338
NspI RCATGY 1 cut(s) 302
PciSI GCTCTTC 2 cut(s) 87, 105
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 4 cut(s) 222, 242, 263, 508
PfeI GAWTC 2 cut(s) 48, 488
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 3 cut(s) 133, 136, 508
Ple19I CGATCG 1 cut(s) 34
PleI GAGTC 2 cut(s) 174, 390
PpsI GAGTC 2 cut(s) 174, 390
PshAI GACNNNNGTC 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 190
PvuI CGATCG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 468
SapI GCTCTTC 2 cut(s) 87, 105
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 3 cut(s) 132, 135, 507
Sau3AI GATC 2 cut(s) 31, 56
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 174, 390
SetI ASST 5 cut(s) 82, 136, 147, 177, 348
SfaNI GCATC 3 cut(s) 229, 244, 250
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 468
Sse9I AATT 3 cut(s) 232, 371, 405
SsiI CCGC 4 cut(s) 115, 129, 140, 193
SspMI CTAG 1 cut(s) 272
TaqI TCGA 4 cut(s) 30, 46, 55, 495
TasI AATT 3 cut(s) 232, 371, 405
TfiI GAWTC 2 cut(s) 48, 488
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 168
TseI GCWGC 3 cut(s) 131, 134, 506
TspDTI ATGAA 4 cut(s) 40, 384, 459, 515
TspRI CASTG 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 302
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 3 cut(s) 244, 265, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.