Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014770

Physical Location & Seq

Genomic Coordinates Reverse (-)

18136826 .. 18139486

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGAGGCCTGGCAACAAGATCATACAAGCCAAACTGGTGCTTCTAGGGGACATGGGAACTGGGAAAACCAGCTTGGTGTTAAGATTTGTCAAAGGCCAGTTCTTCGATAACCAGGAACCAACGATAGGAGCAGCTTTTTTCACTCAAATACTGTCTTTAAGTGAAGCCACTGTGAAGTTTGATATATGGGACACCGCAGGACAAGAACGATACCATAGCTTGGCTCCTATGTACTATCGTGGTGCAGCATCGGCTGTAGTCGTGTATGACATCTCAAGCACGATGATCCATTATTTATCACATTCTCTAGGGAATTTGAACTTGGTGATGGCATTGGTTGCAAATAAGTGCGACTTGGAGGCAAAAAGGGAGGTCGAGAGTGAGGAAGGGGAGCAATTTGCTCAAGAGAATGGGATGTTTTTCTTGGAAACGTCAGCCAAAACCGCGCAGAACATTAACGAGCTTTTCCATGAAATAGCAAAGAGATTAGCAAGAGCTGCTCCCGCAAAGCCTGCCAGAGCGAATCTAAACAGCGAAACACGAGACAGAAGAAGACTGGGATTTTGCTGCTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

194

Amino Acids

21.41

Weight (kDa)

7.73

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014770)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31240 FvH4_6g31240
malus_domestica	MD09G1212500.v1.1 MD17G1194500.v1.1
prunus_persica	Prupe.3G070500_v2.0.a1
pyrus_communis	pycom09g12980 pycom17g20030
rosa_chinensis	RchiOBHm_Chr2g0137961
rosa_laevigata	RLG00000019694
rosa_multiflora	Rmu_sc0002170.1_g000053
rosa_roxburghii	Rroxscaffold_2G00106620
rosa_rugosa	Rorug02G0348300 Rorug02G0348400 Rorug02G0348500
rosa_samantha	Rh2AG394800 Rh2CG381400
rosa_wichuraiana	Rw2G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	1 cut(s)	449
AciI	CCGC	3 cut(s)	198, 447, 507
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	128, 223
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	10, 114
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 308, 340
AluBI	AGCT	5 cut(s)	75, 137, 222, 466, 500
AluI	AGCT	5 cut(s)	75, 137, 222, 466, 500
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	2 cut(s)	8, 97
ApeKI	GCWGC	4 cut(s)	134, 248, 500, 570
ApoI	RAATTY	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AspLEI	GCGC	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	340
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	562
BbvI	GCAGC	4 cut(s)	146, 260, 487, 557
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	12, 116
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	2 cut(s)	47, 311
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	4 cut(s)	135, 249, 501, 571
BlsI	GCNGC	4 cut(s)	136, 250, 502, 572
Bme1390I	CCNGG	2 cut(s)	12, 116
BmiI	GGNNCC	2 cut(s)	120, 228
BmrFI	CCNGG	2 cut(s)	12, 116
BmrI	ACTGGG	2 cut(s)	72, 569
BmsI	GCATC	1 cut(s)	260
BmuI	ACTGGG	2 cut(s)	72, 569
BpiI	GAAGAC	1 cut(s)	562
BpuEI	CTTGAG	2 cut(s)	262, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 223
Bse1I	ACTGG	4 cut(s)	42, 67, 100, 564
BseBI	CCWGG	2 cut(s)	12, 116
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	128, 223
BseNI	ACTGG	4 cut(s)	42, 67, 100, 564
BseXI	GCAGC	4 cut(s)	146, 260, 487, 557
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	2 cut(s)	10, 99
BslFI	GGGAC	2 cut(s)	65, 206
BslI	CCNNNNNNNGG	2 cut(s)	128, 223
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	65, 206
BsnI	GGCC	2 cut(s)	10, 99
Bsp143I	GATC	2 cut(s)	21, 288
BspACI	CCGC	3 cut(s)	198, 447, 507
BspANI	GGCC	2 cut(s)	10, 99
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	120, 228
BspPI	GGATC	1 cut(s)	283
BsrI	ACTGG	4 cut(s)	42, 67, 100, 564
BssMI	GATC	2 cut(s)	21, 288
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	12, 116
Bst4CI	ACNGT	2 cut(s)	156, 175
BstAPI	GCANNNNNTGC	3 cut(s)	341, 500, 515
BstC8I	GCNNGC	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	423
BstFNI	CGCG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	24, 291
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	2 cut(s)	21, 288
BstMWI	GCNNNNNNNGC	6 cut(s)	254, 341, 446, 500, 506, 515
BstNI	CCWGG	2 cut(s)	12, 116
BstSCI	CCNGG	2 cut(s)	10, 114
BstSFI	CTRYAG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	4 cut(s)	146, 260, 487, 557
BstV2I	GAAGAC	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	10, 99
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	55, 473
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	23, 290
DpnII	GATC	2 cut(s)	21, 288
Eco147I	AGGCCT	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	10, 114
FaeI	CATG	2 cut(s)	58, 476
FaiI	YATR	8 cut(s)	26, 56, 188, 190, 219, 233, 270, 474
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	2 cut(s)	65, 206
FatI	CATG	2 cut(s)	54, 472
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	135, 249, 501, 571
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	4 cut(s)	135, 249, 501, 571
FspBI	CTAG	2 cut(s)	47, 311
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	4 cut(s)	135, 249, 501, 571
HaeIII	GGCC	2 cut(s)	10, 99
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	58, 476
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	1 cut(s)	526
HphI	GGTGA	1 cut(s)	340
Hpy188III	TCNNGA	2 cut(s)	379, 407
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	156, 175
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	248, 344
HpyF10VI	GCNNNNNNNGC	6 cut(s)	254, 341, 446, 500, 506, 515
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	58, 476
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	21, 288
LmnI	GCTCC	4 cut(s)	131, 232, 394, 508
Lsp1109I	GCAGC	4 cut(s)	146, 260, 487, 557
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	2 cut(s)	47, 311
MaeII	ACGT	1 cut(s)	434
MalI	GATC	2 cut(s)	23, 290
MboI	GATC	2 cut(s)	21, 288
MboII	GAAGA	3 cut(s)	97, 564, 567
MluCI	AATT	2 cut(s)	316, 398
MnlI	CCTC	3 cut(s)	355, 367, 379
MseI	TTAA	3 cut(s)	83, 161, 459
MspR9I	CCNGG	2 cut(s)	12, 116
MvaI	CCWGG	2 cut(s)	12, 116
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	6 cut(s)	254, 341, 446, 500, 506, 515
NdeII	GATC	2 cut(s)	21, 288
NlaIII	CATG	2 cut(s)	58, 476
NlaIV	GGNNCC	2 cut(s)	120, 228
PceI	AGGCCT	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	526
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	136, 250, 502, 572
Psp6I	CCWGG	2 cut(s)	10, 114
PspGI	CCWGG	2 cut(s)	10, 114
PspN4I	GGNNCC	2 cut(s)	120, 228
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	83, 161, 459
SatI	GCNGC	4 cut(s)	135, 249, 501, 571
Sau3AI	GATC	2 cut(s)	21, 288
ScrFI	CCNGG	2 cut(s)	12, 116
SetI	ASST	7 cut(s)	77, 139, 224, 378, 437, 468, 502
SfaNI	GCATC	1 cut(s)	260
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	277, 405
SmoI	CTYRAG	2 cut(s)	277, 405
Sse9I	AATT	2 cut(s)	316, 398
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	3 cut(s)	198, 447, 507
SspMI	CTAG	2 cut(s)	47, 311
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	10, 114
TaaI	ACNGT	2 cut(s)	156, 175
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	108, 378
TasI	AATT	2 cut(s)	316, 398
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	3 cut(s)	83, 161, 459
Tru9I	TTAA	3 cut(s)	83, 161, 459
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	4 cut(s)	134, 248, 500, 570
TspDTI	ATGAA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	316
XspI	CTAG	2 cut(s)	47, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.