pycom09g12980

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014770
Physical Location & Seq
Reverse (-)
11511719 .. 11515055
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12980.4

Sequence Viewer

Length: 825 bp
ATGGAGAAGTGCAAAGTGCTACTAAACTACCAGTCAATACAACAACCAGTCCACTTTCTAGTTTCTCCATCTATTCACTTTCATTTTCTAGCAAAATCCACACAAAAAATTCTTGTCACTTGTATTGCAACTTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAACCTTGTACAATTTTGATCAAAGTAGTGCTCCAATGGCCAGGCCTGGCAACAACGATCATACAAGCCAAACTGGTGCTTCTGGGGGACATGGGAACTGGGAAAACCAGTTTGGTGTTAAGATTTGTCAAAGGCCAGTTTTTCGATAACCAGGAACCAACAATTGGAGCAGCTTTTTTCACTCAGATACTGTCTTTAAGCGAAGCCACTGTGAAGTTTGACATATGGGACACCGCAGGACAAGAACGATACCATAGCTTGGCTCCTATGTACTATCGTGGTGCAGCAGCAGCAGTAGTCGCGTACGACATCTCAAGCGCGACATTTACTCGAGCCAAAAAATGGGTTCAAGAATTGCAGAGGCAAGGGAATTTAAACTTGGTGATGGCATTGGTTGGAACTAAGTGCGACTTGGAGGCGAAAAGGGAGGTCGAGAGTGAGGAAGGGGAGCAATTTGCTCAAGAGAATGGGATGTTTTTCTTGGAAACATCAGCCAAAACCGCACAGAACATCAACGAGCTTTTCCATGAAATAGCAAAGAGATTAGCAAGAGCTTGCCCCCCAAGGCCTGCCGGAGTGAACCTAAATAGCGTAACACGAGACAGAAGAAGAAAGGCATTTTGCTGCTTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

275

Amino Acids

30.36

Weight (kDa)

9.17

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g31240 FvH4_6g31240
malus_domestica MD09G1212500.v1.1 MD17G1194500.v1.1
prunus_persica Prupe.3G070500_v2.0.a1
pyrus_communis pycom09g12980 pycom17g20030
rosa_chinensis RchiOBHm_Chr2g0137961
rosa_laevigata RLG00000019694
rosa_multiflora Rmu_sc0002170.1_g000053
rosa_roxburghii Rroxscaffold_2G00106620
rosa_rugosa Rorug02G0348300 Rorug02G0348400 Rorug02G0348500
rosa_samantha Rh2AG394800 Rh2CG381400
rosa_wichuraiana Rw2G032290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 353, 448, 531
AccII CGCG 2 cut(s) 491, 509
AciI CCGC 2 cut(s) 423, 690
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 2 cut(s) 108, 559
AfaI GTAC 3 cut(s) 199, 461, 494
AfiI CCNNNNNNNGG 3 cut(s) 353, 448, 531
AgsI TTSAA 1 cut(s) 539
AjnI CCWGG 3 cut(s) 229, 234, 339
AjuI GAANNNNNNNTTGG 6 cut(s) 284, 316, 336, 368, 551, 583
AluBI AGCT 4 cut(s) 362, 447, 709, 743
AluI AGCT 4 cut(s) 362, 447, 709, 743
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 783
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 4 cut(s) 227, 232, 322, 755
ApeKI GCWGC 5 cut(s) 359, 473, 476, 479, 813
ApoI RAATTY 2 cut(s) 108, 559
AspLEI GCGC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 583
AvaI CYCGRG 1 cut(s) 519
BalI TGGCCA 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BauI CACGAG 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 5 cut(s) 371, 485, 488, 491, 800
BccI CCATC 2 cut(s) 76, 568
BciT130I CCWGG 3 cut(s) 231, 236, 341
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 2 cut(s) 59, 89
BisI GCNGC 5 cut(s) 360, 474, 477, 480, 814
BlsI GCNGC 5 cut(s) 361, 475, 478, 481, 815
Bme1390I CCNGG 3 cut(s) 231, 236, 341
BmeT110I CYCGRG 1 cut(s) 519
BmiI GGNNCC 2 cut(s) 345, 453
BmrFI CCNGG 3 cut(s) 231, 236, 341
BmrI ACTGGG 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 487, 633
BsaJI CCNNGG 1 cut(s) 752
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 448, 531
Bse1I ACTGG 6 cut(s) 31, 47, 267, 292, 297, 325
BseBI CCWGG 3 cut(s) 231, 236, 341
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 3 cut(s) 353, 448, 531
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 6 cut(s) 31, 47, 267, 292, 297, 325
BseXI GCAGC 5 cut(s) 371, 485, 488, 491, 800
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 2 cut(s) 491, 509
BshFI GGCC 4 cut(s) 229, 234, 324, 757
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 1 cut(s) 762
BsiWI CGTACG 1 cut(s) 492
BslFI GGGAC 2 cut(s) 290, 431
BslI CCNNNNNNNGG 3 cut(s) 353, 448, 531
BsmAI GTCTC 1 cut(s) 783
BsmFI GGGAC 2 cut(s) 290, 431
BsnI GGCC 4 cut(s) 229, 234, 324, 757
BsoBI CYCGRG 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 197
Bsp143I GATC 2 cut(s) 207, 246
BspACI CCGC 2 cut(s) 423, 690
BspANI GGCC 4 cut(s) 229, 234, 324, 757
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 2 cut(s) 491, 509
BspLI GGNNCC 2 cut(s) 345, 453
BsrGI TGTACA 1 cut(s) 197
BsrI ACTGG 6 cut(s) 31, 47, 267, 292, 297, 325
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 2 cut(s) 207, 246
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 1 cut(s) 752
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 3 cut(s) 231, 236, 341
Bst4CI ACNGT 2 cut(s) 381, 400
BstAUI TGTACA 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 745, 759
BstDEI CTNAG 2 cut(s) 372, 591
BstF5I GGATG 1 cut(s) 666
BstFNI CGCG 2 cut(s) 491, 509
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 2 cut(s) 210, 249
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 2 cut(s) 207, 246
BstMWI GCNNNNNNNGC 4 cut(s) 226, 479, 488, 689
BstNI CCWGG 3 cut(s) 231, 236, 341
BstSCI CCNGG 3 cut(s) 229, 234, 339
BstUI CGCG 2 cut(s) 491, 509
BstV1I GCAGC 5 cut(s) 371, 485, 488, 491, 800
BsuRI GGCC 4 cut(s) 229, 234, 324, 757
BtsCI GGATG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 745, 759
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 509
Csp6I GTAC 3 cut(s) 198, 460, 493
CviAII CATG 2 cut(s) 280, 716
CviQI GTAC 3 cut(s) 198, 460, 493
DdeI CTNAG 2 cut(s) 372, 591
DpnI GATC 2 cut(s) 209, 248
DpnII GATC 2 cut(s) 207, 246
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 752
Eco147I AGGCCT 2 cut(s) 234, 757
Eco88I CYCGRG 1 cut(s) 519
EcoRII CCWGG 3 cut(s) 229, 234, 339
EcoT14I CCWWGG 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 752
FaeI CATG 2 cut(s) 283, 719
FaiI YATR 7 cut(s) 251, 281, 413, 415, 444, 458, 717
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FaqI GGGAC 2 cut(s) 290, 431
FatI CATG 2 cut(s) 279, 715
FauNDI CATATG 1 cut(s) 413
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 5 cut(s) 360, 474, 477, 480, 814
FokI GGATG 1 cut(s) 673
Fsp4HI GCNGC 5 cut(s) 360, 474, 477, 480, 814
FspBI CTAG 2 cut(s) 59, 89
GlaI GCGC 1 cut(s) 508
GluI GCNGC 5 cut(s) 360, 474, 477, 480, 814
HaeIII GGCC 4 cut(s) 229, 234, 324, 757
HapII CCGG 1 cut(s) 762
HhaI GCGC 1 cut(s) 509
Hin1II CATG 2 cut(s) 283, 719
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HpaII CCGG 1 cut(s) 762
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 52, 769
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 3 cut(s) 539, 622, 650
Hpy8I GTNNAC 2 cut(s) 52, 769
HpyAV CCTTC 1 cut(s) 626
HpyCH4III ACNGT 2 cut(s) 381, 400
HpyCH4V TGCA 4 cut(s) 12, 128, 473, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 226, 479, 488, 689
HpyF3I CTNAG 2 cut(s) 372, 591
Hsp92II CATG 2 cut(s) 283, 719
HspAI GCGC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 2 cut(s) 207, 246
LmnI GCTCC 4 cut(s) 225, 356, 457, 637
Lsp1109I GCAGC 5 cut(s) 371, 485, 488, 491, 800
MaeI CTAG 2 cut(s) 59, 89
MaeIII GTNAC 2 cut(s) 115, 781
MalI GATC 2 cut(s) 209, 248
MboI GATC 2 cut(s) 207, 246
MboII GAAGA 2 cut(s) 807, 810
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 6 cut(s) 108, 201, 351, 542, 559, 641
MluNI TGGCCA 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 4 cut(s) 543, 598, 610, 622
Mox20I TGGCCA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 229
MseI TTAA 3 cut(s) 308, 386, 563
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 1 cut(s) 762
MspR9I CCNGG 3 cut(s) 231, 236, 341
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 3 cut(s) 231, 236, 341
MvnI CGCG 2 cut(s) 491, 509
MwoI GCNNNNNNNGC 4 cut(s) 226, 479, 488, 689
NdeI CATATG 1 cut(s) 413
NdeII GATC 2 cut(s) 207, 246
NlaIII CATG 2 cut(s) 283, 719
NlaIV GGNNCC 2 cut(s) 345, 453
NmuCI GTSAC 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 519
PceI AGGCCT 2 cut(s) 234, 757
Pfl23II CGTACG 1 cut(s) 492
PflMI CCANNNNNTGG 3 cut(s) 353, 448, 531
PkrI GCNGC 5 cut(s) 361, 475, 478, 481, 815
Psp6I CCWGG 3 cut(s) 229, 234, 339
PspGI CCWGG 3 cut(s) 229, 234, 339
PspLI CGTACG 1 cut(s) 492
PspN4I GGNNCC 2 cut(s) 345, 453
PspXI VCTCGAGB 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 379
RsaI GTAC 3 cut(s) 199, 461, 494
RsaNI GTAC 3 cut(s) 198, 460, 493
SaqAI TTAA 3 cut(s) 308, 386, 563
SatI GCNGC 5 cut(s) 360, 474, 477, 480, 814
Sau3AI GATC 2 cut(s) 207, 246
ScrFI CCNGG 3 cut(s) 231, 236, 341
SduI GDGCHC 1 cut(s) 222
SetI ASST 7 cut(s) 196, 364, 449, 621, 711, 745, 774
Sfr274I CTCGAG 1 cut(s) 519
SlaI CTCGAG 1 cut(s) 519
SmlI CTYRAG 3 cut(s) 502, 519, 648
SmoI CTYRAG 3 cut(s) 502, 519, 648
Sse9I AATT 6 cut(s) 108, 201, 351, 542, 559, 641
SseBI AGGCCT 2 cut(s) 234, 757
SsiI CCGC 2 cut(s) 423, 690
SspMI CTAG 2 cut(s) 59, 89
StuI AGGCCT 2 cut(s) 234, 757
StyD4I CCNGG 3 cut(s) 229, 234, 339
StyI CCWWGG 1 cut(s) 752
TaaI ACNGT 2 cut(s) 381, 400
TaqI TCGA 3 cut(s) 333, 520, 621
TasI AATT 6 cut(s) 108, 201, 351, 542, 559, 641
TatI WGTACW 2 cut(s) 197, 459
Tru1I TTAA 3 cut(s) 308, 386, 563
Tru9I TTAA 3 cut(s) 308, 386, 563
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 5 cut(s) 359, 473, 476, 479, 813
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 71, 732
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 3 cut(s) 353, 448, 531
XapI RAATTY 2 cut(s) 108, 559
XhoI CTCGAG 1 cut(s) 519
XspI CTAG 2 cut(s) 59, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.