Rw2G032290

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
53199568 .. 53203640
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032290.1

Sequence Viewer

Length: 597 bp
ATGGCAAGACCTGGAAACAAGATCATACAAGCCAAATTGGTGCTTCTAGGAGACATGGGAACTGGGAAAACAAGTTTGGTACTTAGATTTGTCAAAGGCCAGTTTTTCGATCACCAGGAGCCAACCATAGGAGCAGCTTTTTTCACTCAGATACTATCTTTAAGTGAAGCCACTGTGAAATTTGATATATGGGACACAGCAGGACAAGAACGATACCATAGCTTGGCTCCTATGTACTATCGTGGTGCAGCAGCAGCTGTAGTCGTCTATGACATCTCAAGCACGGATACATTCACTCGAGCCAAAAAATGGGTTCAAGAATTGCAGAGGCAAGGGAATTTAAATTTGGTGATGGCATTGGTTGCAAATAAGTCTGACTTGGAGGCAAAAAGGGAGGTGGACAATGAGGAAGGGGAGCAATTTGCTCAAGATAATGGGATGTTTTACATGGAAACTTCAGCCAAAACCTCGCAGAATATTAATGAACTTTTCCACGAAATAGCAAAGAGATTAGCAAGAGCTTGCCCATCAAAGCCTATTGGAATGACTCTAGCAACACGAGACAGAAGAAGAAAATCATTTTGTTGCTTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

198

Amino Acids

22.21

Weight (kDa)

8.97

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 10 - 169 4.3e-16 ADP-ribosylation factor family
Ras PF00071 12 - 171 1.5e-59 Ras family
Roc PF08477 12 - 126 2.1e-34 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014770)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 223, 309
AcsI RAATTY 3 cut(s) 179, 337, 343
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 2 cut(s) 81, 236
AfiI CCNNNNNNNGG 3 cut(s) 128, 223, 309
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 2 cut(s) 10, 114
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 329, 361
AluBI AGCT 4 cut(s) 137, 222, 257, 521
AluI AGCT 4 cut(s) 137, 222, 257, 521
Alw26I GTCTC 2 cut(s) 45, 555
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 4 cut(s) 134, 248, 251, 254
ApoI RAATTY 3 cut(s) 179, 337, 343
AseI ATTAAT 1 cut(s) 480
AsuHPI GGTGA 2 cut(s) 104, 361
AvaI CYCGRG 1 cut(s) 297
BauI CACGAG 1 cut(s) 558
BbvI GCAGC 4 cut(s) 146, 260, 263, 266
BccI CCATC 2 cut(s) 346, 535
BciT130I CCWGG 2 cut(s) 12, 116
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 45, 555
BfaI CTAG 2 cut(s) 47, 551
BfmI CTRYAG 1 cut(s) 258
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 4 cut(s) 135, 249, 252, 255
BlsI GCNGC 4 cut(s) 136, 250, 253, 256
Bme1390I CCNGG 2 cut(s) 12, 116
BmeT110I CYCGRG 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 120, 228
BmrFI CCNGG 2 cut(s) 12, 116
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 262, 411
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 223, 309
Bse1I ACTGG 2 cut(s) 67, 100
BseBI CCWGG 2 cut(s) 12, 116
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 3 cut(s) 128, 223, 309
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 67, 100
BseXI GCAGC 4 cut(s) 146, 260, 263, 266
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 128, 223, 309
BsmAI GTCTC 2 cut(s) 45, 555
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 297
Bsp143I GATC 2 cut(s) 21, 109
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 120, 228
BsrI ACTGG 2 cut(s) 67, 100
BssMI GATC 2 cut(s) 21, 109
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 12, 116
Bst4CI ACNGT 1 cut(s) 175
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 83, 147
BstF5I GGATG 1 cut(s) 444
BstKTI GATC 2 cut(s) 24, 112
BstMAI GTCTC 2 cut(s) 45, 555
BstMBI GATC 2 cut(s) 21, 109
BstMWI GCNNNNNNNGC 2 cut(s) 254, 362
BstNI CCWGG 2 cut(s) 12, 116
BstSCI CCNGG 2 cut(s) 10, 114
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 146, 260, 263, 266
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 523
CaiI CAGNNNCTG 1 cut(s) 257
Csp6I GTAC 2 cut(s) 80, 235
CviAII CATG 2 cut(s) 55, 448
CviQI GTAC 2 cut(s) 80, 235
DdeI CTNAG 2 cut(s) 83, 147
DpnI GATC 2 cut(s) 23, 111
DpnII GATC 2 cut(s) 21, 109
DraI TTTAAA 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 10, 114
FaeI CATG 2 cut(s) 58, 451
FaiI YATR 9 cut(s) 26, 56, 128, 188, 190, 219, 233, 270, 449
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 54, 447
Fnu4HI GCNGC 4 cut(s) 135, 249, 252, 255
FokI GGATG 1 cut(s) 451
Fsp4HI GCNGC 4 cut(s) 135, 249, 252, 255
FspBI CTAG 2 cut(s) 47, 551
GluI GCNGC 4 cut(s) 135, 249, 252, 255
HaeIII GGCC 1 cut(s) 99
Hin1II CATG 2 cut(s) 58, 451
HinfI GANTC 1 cut(s) 547
HphI GGTGA 2 cut(s) 104, 361
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 2 cut(s) 150, 376
Hpy188III TCNNGA 2 cut(s) 317, 428
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 248, 325, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 362
HpyF3I CTNAG 2 cut(s) 83, 147
Hsp92II CATG 2 cut(s) 58, 451
Kzo9I GATC 2 cut(s) 21, 109
LmnI GCTCC 4 cut(s) 118, 131, 232, 415
LpnPI CCDG 6 cut(s) 24, 48, 101, 113, 128, 186
Lsp1109I GCAGC 4 cut(s) 146, 260, 263, 266
MaeI CTAG 2 cut(s) 47, 551
MalI GATC 2 cut(s) 23, 111
MboI GATC 2 cut(s) 21, 109
MboII GAAGA 2 cut(s) 579, 582
MluCI AATT 6 cut(s) 35, 179, 320, 337, 343, 419
MlyI GAGTC 1 cut(s) 541
MnlI CCTC 5 cut(s) 321, 376, 388, 400, 478
MseI TTAA 3 cut(s) 161, 341, 480
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 12, 116
MvaI CCWGG 2 cut(s) 12, 116
MwoI GCNNNNNNNGC 2 cut(s) 254, 362
NdeII GATC 2 cut(s) 21, 109
NlaIII CATG 2 cut(s) 58, 451
NlaIV GGNNCC 2 cut(s) 120, 228
PaeR7I CTCGAG 1 cut(s) 297
PflMI CCANNNNNTGG 2 cut(s) 223, 309
PkrI GCNGC 4 cut(s) 136, 250, 253, 256
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 10, 114
PspGI CCWGG 2 cut(s) 10, 114
PspN4I GGNNCC 2 cut(s) 120, 228
PspXI VCTCGAGB 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 2 cut(s) 81, 236
RsaNI GTAC 2 cut(s) 80, 235
SaqAI TTAA 3 cut(s) 161, 341, 480
SatI GCNGC 4 cut(s) 135, 249, 252, 255
Sau3AI GATC 2 cut(s) 21, 109
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 2 cut(s) 12, 116
SetI ASST 7 cut(s) 13, 139, 224, 259, 399, 470, 523
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 297
SlaI CTCGAG 1 cut(s) 297
SmiI ATTTAAAT 1 cut(s) 342
SmlI CTYRAG 3 cut(s) 277, 297, 426
SmoI CTYRAG 3 cut(s) 277, 297, 426
Sse9I AATT 6 cut(s) 35, 179, 320, 337, 343, 419
SspI AATATT 1 cut(s) 478
SspMI CTAG 2 cut(s) 47, 551
StyD4I CCNGG 2 cut(s) 10, 114
SwaI ATTTAAAT 1 cut(s) 342
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 108, 298
TasI AATT 6 cut(s) 35, 179, 320, 337, 343, 419
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 3 cut(s) 161, 341, 480
Tru9I TTAA 3 cut(s) 161, 341, 480
TscAI CASTG 1 cut(s) 178
TseI GCWGC 4 cut(s) 134, 248, 251, 254
TspDTI ATGAA 1 cut(s) 498
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 2 cut(s) 223, 309
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 3 cut(s) 179, 337, 343
XhoI CTCGAG 1 cut(s) 297
XspI CTAG 2 cut(s) 47, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.