FvH4_6g32020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014145
Physical Location & Seq
Reverse (-)
25115964 .. 25118734
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32020.t1

Sequence Viewer

Length: 1014 bp
ATGGATGGCGCCGGAGAGTATCACATGGGCCCCGACGAGTCGTACCGGTCTCTGCCGTCGGTTTACTTGGCCTTCTTGACAATCTGGTTCATCTCCGCTTGCTCTTGGACCTTCAACACCTACAAAAACCGCCACCTCCAGACGAATAATTTGCAGTGGACGCTCGCATCTGTACCATTAATTAAAGCCTTGCAACTCACATTATCTTTCCTCTTCTGGTATTCATGCTTTCATCTACAGATATGCTCTTTGTGGATGTCATTTGGGGTGTATGTAACTGGAGTGATATTTCAAACAGCTTCTTTTGTGTCTTTCTTACTCATATCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAATCACTGAGCGGCGTACTACTGCTTCCCTTGGCTGTGTGTTTTACTTGACTCTAGTTGGATACAGGGCTTCTGTACCTTATTTTTCAGTCCTGCTGTTACTTAATTATGTTATCTCATTCTACGTGATATTCCATCATATATCTCAAAATCTGTTAGTGTTGCGGGAACAGTTAAGTTTCATAGATAATGAGGATGTGCATGCAATGCATGATGCAGTCTATACAAAGTACGTCATGTTCAAAAAATTTCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTATGATATACATTAACATGGATGACTCTTCAGAAAATTACTGGATTCGATTGTTAGTTCGAGAATGGGCACAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGACCTGGCACCACGTTTCTCAGTCATGCCAACTTTGAAATCTAAAGGAGAACTAGCAGTAGCTCCTGTCTATAGCATTGAAATGGATGCAGAAACTTTCAAAGATTTTACTCGGCATGAATGGCACATTGGTGTGCCCACTTTGAAATCTTCTGATGAGAGCTCAAAGGATTCTGTCTTGGTCATAATTCAGCATCCTCGCGCATTTACATTGACTAAAGCTGGAGCTGGAAAATCTTCTCAAAGCCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

338

Amino Acids

38.82

Weight (kDa)

7.15

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 751
AccB1I GGYRCC 2 cut(s) 8, 766
AccBSI CCGCTC 1 cut(s) 370
AccII CGCG 1 cut(s) 960
AciI CCGC 4 cut(s) 96, 130, 370, 523
AcsI RAATTY 1 cut(s) 605
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 5 cut(s) 44, 174, 376, 435, 590
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 9 cut(s) 115, 293, 360, 601, 611, 796, 839, 859, 904
AjnI CCWGG 1 cut(s) 762
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AleI CACNNNNGTG 1 cut(s) 888
AluBI AGCT 6 cut(s) 299, 821, 921, 980, 986, 1010
AluI AGCT 6 cut(s) 299, 821, 921, 980, 986, 1010
Alw21I GWGCWC 1 cut(s) 923
Alw26I GTCTC 2 cut(s) 54, 635
AoxI GGCC 2 cut(s) 28, 69
ApaI GGGCCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 605
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AseI ATTAAT 1 cut(s) 179
AsiGI ACCGGT 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 994
AspLEI GCGC 2 cut(s) 11, 962
AspS9I GGNCC 4 cut(s) 28, 29, 108, 760
AvaII GGWCC 2 cut(s) 108, 760
BaeGI GKGCMC 3 cut(s) 32, 715, 897
BanI GGYRCC 2 cut(s) 8, 766
BanII GRGCYC 2 cut(s) 32, 923
BarI GAAGNNNNNNTAC 2 cut(s) 367, 399
Bbv12I GWGCWC 1 cut(s) 923
BccI CCATC 1 cut(s) 501
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 1 cut(s) 764
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 54, 635
BfaI CTAG 2 cut(s) 413, 812
BfmI CTRYAG 2 cut(s) 236, 829
BfoI RGCGCY 1 cut(s) 12
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 764
Bme18I GGWCC 2 cut(s) 108, 760
BmgT120I GGNCC 4 cut(s) 28, 29, 108, 760
BmiI GGNNCC 5 cut(s) 10, 30, 31, 761, 768
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 6 cut(s) 176, 348, 562, 732, 835, 961
BpmI CTGGAG 3 cut(s) 122, 300, 1002
BsaAI YACGTR 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 388, 633
BsaWI WCCGGW 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 283, 689
Bse3DI GCAATG 2 cut(s) 570, 624
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 2 cut(s) 388, 633
BseGI GGATG 6 cut(s) 10, 261, 559, 670, 850, 952
BseMI GCAATG 2 cut(s) 570, 624
BseMII CTCAG 2 cut(s) 357, 792
BseNI ACTGG 2 cut(s) 283, 689
BseSI GKGCMC 3 cut(s) 32, 715, 897
Bsh1236I CGCG 1 cut(s) 960
BshFI GGCC 2 cut(s) 30, 71
BshNI GGYRCC 2 cut(s) 8, 766
BshTI ACCGGT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 923
BsiSI CCGG 2 cut(s) 12, 46
BslFI GGGAC 1 cut(s) 773
BsmAI GTCTC 2 cut(s) 54, 635
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 2 cut(s) 30, 71
Bso31I GGTCTC 1 cut(s) 54
Bsp120I GGGCCC 1 cut(s) 28
Bsp1286I GDGCHC 4 cut(s) 32, 715, 897, 923
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 4 cut(s) 96, 130, 370, 523
BspANI GGCC 2 cut(s) 30, 71
BspCNI CTCAG 2 cut(s) 358, 791
BspFNI CGCG 1 cut(s) 960
BspLI GGNNCC 5 cut(s) 10, 30, 31, 761, 768
BspT107I GGYRCC 2 cut(s) 8, 766
BspTNI GGTCTC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 370
BsrDI GCAATG 2 cut(s) 570, 624
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 2 cut(s) 283, 689
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 388, 633
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 388, 633
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 2 cut(s) 531, 717
Bst6I CTCTTC 2 cut(s) 218, 676
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 2 cut(s) 345, 565
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 4 cut(s) 100, 165, 350, 561
BstDEI CTNAG 3 cut(s) 366, 778, 1011
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 6 cut(s) 10, 261, 559, 670, 850, 952
BstFNI CGCG 1 cut(s) 960
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 962
BstMAI GTCTC 2 cut(s) 54, 635
BstMWI GCNNNNNNNGC 4 cut(s) 160, 345, 565, 880
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 2 cut(s) 236, 829
BstSLI GKGCMC 3 cut(s) 32, 715, 897
BstUI CGCG 1 cut(s) 960
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 2 cut(s) 30, 71
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 6 cut(s) 10, 261, 559, 670, 850, 952
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 2 cut(s) 161, 363
Cac8I GCNNGC 4 cut(s) 100, 165, 350, 561
CfoI GCGC 2 cut(s) 11, 962
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 4 cut(s) 28, 29, 108, 760
CseI GACGC 2 cut(s) 169, 341
Csp6I GTAC 5 cut(s) 43, 173, 375, 434, 589
CspAI ACCGGT 1 cut(s) 45
CviQI GTAC 5 cut(s) 43, 173, 375, 434, 589
DdeI CTNAG 3 cut(s) 366, 778, 1011
DinI GGCGCC 1 cut(s) 10
DrdI GACNNNNNNGTC 1 cut(s) 751
DseDI GACNNNNNNGTC 1 cut(s) 751
Eam1104I CTCTTC 2 cut(s) 218, 676
EarI CTCTTC 2 cut(s) 218, 676
Ecl136II GAGCTC 1 cut(s) 921
Eco130I CCWWGG 2 cut(s) 388, 633
Eco24I GRGCYC 2 cut(s) 32, 923
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 108, 760
Eco53kI GAGCTC 1 cut(s) 921
Eco57I CTGAAG 1 cut(s) 657
EcoICRI GAGCTC 1 cut(s) 921
EcoO109I RGGNCCY 2 cut(s) 29, 760
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 2 cut(s) 388, 633
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 2 cut(s) 32, 923
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 388, 633
FalI AAGNNNNNCTT 1 cut(s) 994
FaqI GGGAC 1 cut(s) 773
FauI CCCGC 1 cut(s) 516
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 6 cut(s) 17, 268, 566, 677, 857, 939
FriOI GRGCYC 2 cut(s) 32, 923
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 2 cut(s) 413, 812
GlaI GCGC 2 cut(s) 10, 961
GluI GCNGC 1 cut(s) 371
GsuI CTGGAG 3 cut(s) 122, 300, 1002
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 30, 71
HapII CCGG 2 cut(s) 12, 46
HgaI GACGC 2 cut(s) 169, 341
HhaI GCGC 2 cut(s) 11, 962
Hin1I GRCGYC 1 cut(s) 9
Hin6I GCGC 2 cut(s) 9, 960
HinP1I GCGC 2 cut(s) 9, 960
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 5 cut(s) 38, 409, 668, 688, 929
HpaII CCGG 2 cut(s) 12, 46
Hpy166II GTNNAC 4 cut(s) 64, 159, 733, 744
Hpy188I TCNGA 2 cut(s) 676, 913
Hpy188III TCNNGA 3 cut(s) 76, 139, 704
Hpy8I GTNNAC 4 cut(s) 64, 159, 733, 744
Hpy99I CGWCG 2 cut(s) 38, 61
HpyAV CCTTC 2 cut(s) 82, 121
HpyCH4III ACNGT 2 cut(s) 531, 717
HpyCH4IV ACGT 3 cut(s) 483, 591, 772
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 345, 565, 880
HpyF3I CTNAG 3 cut(s) 366, 778, 1011
HpySE526I ACGT 3 cut(s) 483, 591, 772
Hsp92I GRCGYC 1 cut(s) 9
HspAI GCGC 2 cut(s) 9, 960
KasI GGCGCC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 826, 983
LweI GCATC 6 cut(s) 176, 348, 562, 732, 835, 961
MaeI CTAG 2 cut(s) 413, 812
MaeII ACGT 3 cut(s) 483, 591, 772
MaeIII GTNAC 3 cut(s) 274, 332, 456
MbiI CCGCTC 1 cut(s) 370
MboII GAAGA 4 cut(s) 205, 663, 900, 987
MhlI GDGCHC 4 cut(s) 32, 715, 897, 923
MluCI AATT 6 cut(s) 148, 180, 463, 605, 679, 945
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 3 cut(s) 47, 403, 662
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 4 cut(s) 146, 221, 544, 966
Mph1103I ATGCAT 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 994
MseI TTAA 5 cut(s) 179, 183, 462, 533, 657
MslI CAYNNNNRTG 4 cut(s) 659, 839, 888, 890
MspI CCGG 2 cut(s) 12, 46
MspR9I CCNGG 1 cut(s) 764
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 4 cut(s) 160, 345, 565, 880
NarI GGCGCC 1 cut(s) 9
NcoI CCATGG 1 cut(s) 633
NlaIV GGNNCC 5 cut(s) 10, 30, 31, 761, 768
NmeAIII GCCGAG 1 cut(s) 850
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 1 cut(s) 563
OliI CACNNNNGTG 1 cut(s) 888
PacI TTAATTAA 1 cut(s) 183
PaeI GCATGC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 994
PfeI GAWTC 2 cut(s) 688, 929
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 1 cut(s) 372
PleI GAGTC 3 cut(s) 46, 403, 662
PluTI GGCGCC 1 cut(s) 12
PpsI GAGTC 3 cut(s) 46, 403, 662
Ppu21I YACGTR 1 cut(s) 484
PpuMI RGGWCCY 1 cut(s) 760
PshBI ATTAAT 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 923
Psp5II RGGWCCY 1 cut(s) 760
Psp6I CCWGG 1 cut(s) 762
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 5 cut(s) 10, 30, 31, 761, 768
PspOMI GGGCCC 1 cut(s) 28
PspPI GGNCC 4 cut(s) 28, 29, 108, 760
PspPPI RGGWCCY 1 cut(s) 760
PsrI GAACNNNNNNTAC 2 cut(s) 581, 613
RsaI GTAC 5 cut(s) 44, 174, 376, 435, 590
RsaNI GTAC 5 cut(s) 43, 173, 375, 434, 589
RseI CAYNNNNRTG 4 cut(s) 659, 839, 888, 890
SacI GAGCTC 1 cut(s) 923
SaqAI TTAA 5 cut(s) 179, 183, 462, 533, 657
SatI GCNGC 1 cut(s) 371
Sau96I GGNCC 4 cut(s) 28, 29, 108, 760
SchI GAGTC 3 cut(s) 47, 403, 662
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 4 cut(s) 32, 715, 897, 923
SfaNI GCATC 6 cut(s) 176, 348, 562, 732, 835, 961
SfcI CTRYAG 2 cut(s) 236, 829
SfoI GGCGCC 1 cut(s) 10
SinI GGWCC 2 cut(s) 108, 760
SmiMI CAYNNNNRTG 4 cut(s) 659, 839, 888, 890
SphI GCATGC 1 cut(s) 563
Sse9I AATT 6 cut(s) 148, 180, 463, 605, 679, 945
SsiI CCGC 4 cut(s) 96, 130, 370, 523
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 2 cut(s) 413, 812
SstI GAGCTC 1 cut(s) 923
StyD4I CCNGG 1 cut(s) 762
StyI CCWWGG 2 cut(s) 388, 633
TaaI ACNGT 2 cut(s) 531, 717
TaiI ACGT 3 cut(s) 486, 594, 775
TaqI TCGA 2 cut(s) 691, 703
TasI AATT 6 cut(s) 148, 180, 463, 605, 679, 945
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 2 cut(s) 688, 929
Tru1I TTAA 5 cut(s) 179, 183, 462, 533, 657
Tru9I TTAA 5 cut(s) 179, 183, 462, 533, 657
TscAI CASTG 2 cut(s) 161, 370
TspDTI ATGAA 5 cut(s) 79, 213, 221, 529, 891
TspRI CASTG 2 cut(s) 161, 370
VpaK11BI GGWCC 2 cut(s) 108, 760
VspI ATTAAT 1 cut(s) 179
XapI RAATTY 1 cut(s) 605
XceI RCATGY 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 994
XspI CTAG 2 cut(s) 413, 812
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.