Rroxscaffold_2G00105330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014145
Physical Location & Seq
Forward (+)
28764733 .. 28774441
9709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105330.1

Sequence Viewer

Length: 1026 bp
ATGACGGAAATGGAGAGCGCCGGAGAGTATCATATCGGCCCCGACGAGTCGTACCGATCTCTGCCGTCCGTTTACTTGGCCTTCTTGACAATCTGGTTCATCTCCGCCTGCTCCTGGACCTTCAACACCTACAAAAACCGACACCTCCAGCAGTCGAATAATTTGCAGTGGACGCTCACATCTGTACCATTAATTAAAGCCTTACAACTCACATTGTCTTTCTTCTTCTGGTATTCATGCTTTCATCTACAGATATGCTCTCTGTGGATGTCATTTGGGGTGTATGTAACTGGAGTGATATTTCAAACAGCTTCTTTTGTGTCCTTTTTACTCATATCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAGTGACTGAGCGGCGTACTACTGCTTCCCTTGGCTGTGTGTTTTACTTGACTCTAGTTGGATACAGAGCTTCTGTACCTTATTTTTCTGTCCTGCTGCTGCTTAACTATTTTATCTCATTCTACGTGATATTCCACCATATATCTCAAAATCTGTTAGTATTGCGGGAACAGTTAAATTTCATAGATAATGAGGACGTGCATGCAATGCATGATGCAGTCTATACAAAGTACGTCATGTTCAAAAAATTCCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATACATTAACATGGATGACTCATCAGAAAATTACTGGATTCGATTATTAGTTCGAGAGTGGGCACAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGATTTGGCACCACGATTTTCAGTTATGCCAACTTTGAAATCTAAAGGGGAACTAGCAGTCACCCCCATTTATAGCATTGAAATGGATGCAGAAACTTTCAGAGATTTTACTCGGCATGAATGGCACATTGGTGTGCCAACTGTAAAATCTACTGATGAGAGCTCAAAGGATTCTGTCTTGGTAATAATTCAGCATCCTCGTGCATTTAGGCTGACCGAAGCTGGAGCTGGAAAATCTTCTCAAAGCCAAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

341

Amino Acids

39.55

Weight (kDa)

6.59

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 763
AccB1I GGYRCC 1 cut(s) 778
AccBSI CCGCTC 1 cut(s) 382
AciI CCGC 3 cut(s) 105, 382, 535
AcsI RAATTY 2 cut(s) 547, 617
AfaI GTAC 5 cut(s) 53, 186, 388, 447, 602
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 5 cut(s) 124, 305, 613, 808, 851
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AleI CACNNNNGTG 1 cut(s) 900
AluBI AGCT 5 cut(s) 311, 440, 933, 992, 998
AluI AGCT 5 cut(s) 311, 440, 933, 992, 998
Alw21I GWGCWC 1 cut(s) 935
Alw26I GTCTC 1 cut(s) 647
AlwNI CAGNNNCTG 2 cut(s) 377, 656
AoxI GGCC 2 cut(s) 37, 78
ApeKI GCWGC 2 cut(s) 466, 469
ApoI RAATTY 2 cut(s) 547, 617
AseI ATTAAT 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 1006
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 38, 117
AsuHPI GGTGA 1 cut(s) 823
AvaII GGWCC 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 727
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BanI GGYRCC 1 cut(s) 778
BanII GRGCYC 1 cut(s) 935
BarI GAAGNNNNNNTAC 2 cut(s) 379, 411
BauI CACGAG 1 cut(s) 969
Bbv12I GWGCWC 1 cut(s) 935
BbvI GCAGC 2 cut(s) 453, 456
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 115
BciVI GTATCC 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 2 cut(s) 425, 824
BfmI CTRYAG 1 cut(s) 248
BfoI RGCGCY 1 cut(s) 21
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 3 cut(s) 383, 467, 470
BlsI GCNGC 3 cut(s) 384, 468, 471
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 38, 117
BmiI GGNNCC 2 cut(s) 40, 780
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 5 cut(s) 360, 574, 744, 847, 973
BpmI CTGGAG 3 cut(s) 131, 312, 1014
BsaAI YACGTR 1 cut(s) 496
BsaJI CCNNGG 3 cut(s) 400, 622, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 295, 701
Bse3DI GCAATG 2 cut(s) 582, 636
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 400, 622, 645
BseGI GGATG 4 cut(s) 273, 682, 862, 964
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 2 cut(s) 582, 636
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 295, 701
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 2 cut(s) 453, 456
BshFI GGCC 2 cut(s) 39, 80
BshNI GGYRCC 1 cut(s) 778
BsiHKAI GWGCWC 1 cut(s) 935
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 647
BsnI GGCC 2 cut(s) 39, 80
Bsp1286I GDGCHC 2 cut(s) 727, 935
Bsp143I GATC 1 cut(s) 56
Bsp19I CCATGG 1 cut(s) 645
BspACI CCGC 3 cut(s) 105, 382, 535
BspANI GGCC 2 cut(s) 39, 80
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 40, 780
BspT107I GGYRCC 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 582, 636
BsrI ACTGG 2 cut(s) 295, 701
BssECI CCNNGG 3 cut(s) 400, 622, 645
BssMI GATC 1 cut(s) 56
BssSI CACGAG 1 cut(s) 969
BssT1I CCWWGG 3 cut(s) 400, 622, 645
Bst2BI CACGAG 1 cut(s) 969
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 4 cut(s) 543, 658, 729, 913
BstAPI GCANNNNNTGC 2 cut(s) 357, 577
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 3 cut(s) 109, 362, 573
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 645
BstF5I GGATG 4 cut(s) 273, 682, 862, 964
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 172, 357, 577, 892
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 248
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 2 cut(s) 453, 456
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 2 cut(s) 39, 80
BtgI CCRYGG 1 cut(s) 645
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 4 cut(s) 273, 682, 862, 964
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 2 cut(s) 173, 378
Cac8I GCNNGC 3 cut(s) 109, 362, 573
CaiI CAGNNNCTG 2 cut(s) 377, 656
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 38, 117
CseI GACGC 2 cut(s) 181, 353
Csp6I GTAC 5 cut(s) 52, 185, 387, 446, 601
CviAII CATG 9 cut(s) 237, 341, 355, 572, 581, 607, 646, 673, 887
CviQI GTAC 5 cut(s) 52, 185, 387, 446, 601
DdeI CTNAG 1 cut(s) 378
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
DrdI GACNNNNNNGTC 1 cut(s) 763
DseDI GACNNNNNNGTC 1 cut(s) 763
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 933
Eco130I CCWWGG 3 cut(s) 400, 622, 645
Eco24I GRGCYC 1 cut(s) 935
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 933
EcoICRI GAGCTC 1 cut(s) 933
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 3 cut(s) 400, 622, 645
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 935
ErhI CCWWGG 3 cut(s) 400, 622, 645
FaeI CATG 9 cut(s) 240, 344, 358, 575, 584, 610, 649, 676, 890
FatI CATG 9 cut(s) 236, 340, 354, 571, 580, 606, 645, 672, 886
FauI CCCGC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 383, 467, 470
FokI GGATG 4 cut(s) 280, 689, 869, 951
FriOI GRGCYC 1 cut(s) 935
Fsp4HI GCNGC 3 cut(s) 383, 467, 470
FspBI CTAG 2 cut(s) 425, 824
GlaI GCGC 1 cut(s) 19
GluI GCNGC 3 cut(s) 383, 467, 470
GsuI CTGGAG 3 cut(s) 131, 312, 1014
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 39, 80
HapII CCGG 1 cut(s) 21
HgaI GACGC 2 cut(s) 181, 353
HhaI GCGC 1 cut(s) 20
Hin1II CATG 9 cut(s) 240, 344, 358, 575, 584, 610, 649, 676, 890
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 5 cut(s) 47, 421, 680, 700, 941
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 823
Hpy166II GTNNAC 4 cut(s) 73, 171, 745, 756
Hpy188I TCNGA 2 cut(s) 688, 872
Hpy188III TCNNGA 2 cut(s) 85, 716
Hpy8I GTNNAC 4 cut(s) 73, 171, 745, 756
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 91, 130
HpyCH4III ACNGT 4 cut(s) 543, 658, 729, 913
HpyCH4IV ACGT 3 cut(s) 495, 567, 603
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 357, 577, 892
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 3 cut(s) 495, 567, 603
Hsp92II CATG 9 cut(s) 240, 344, 358, 575, 584, 610, 649, 676, 890
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 2 cut(s) 116, 995
Lsp1109I GCAGC 2 cut(s) 453, 456
LweI GCATC 5 cut(s) 360, 574, 744, 847, 973
MaeI CTAG 2 cut(s) 425, 824
MaeII ACGT 3 cut(s) 495, 567, 603
MaeIII GTNAC 4 cut(s) 286, 344, 373, 829
MalI GATC 1 cut(s) 58
MbiI CCGCTC 1 cut(s) 382
MboI GATC 1 cut(s) 56
MboII GAAGA 3 cut(s) 214, 217, 999
MhlI GDGCHC 2 cut(s) 727, 935
MluCI AATT 6 cut(s) 160, 192, 547, 617, 691, 957
MlyI GAGTC 3 cut(s) 56, 415, 674
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 3 cut(s) 155, 556, 978
Mph1103I ATGCAT 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 1006
MseI TTAA 5 cut(s) 191, 195, 474, 545, 669
MslI CAYNNNNRTG 5 cut(s) 671, 851, 900, 902, 969
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 4 cut(s) 172, 357, 577, 892
NcoI CCATGG 1 cut(s) 645
NdeII GATC 1 cut(s) 56
NlaIII CATG 9 cut(s) 240, 344, 358, 575, 584, 610, 649, 676, 890
NlaIV GGNNCC 2 cut(s) 40, 780
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 2 cut(s) 373, 829
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 1 cut(s) 575
OliI CACNNNNGTG 1 cut(s) 900
PacI TTAATTAA 1 cut(s) 195
PaeI GCATGC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 1006
PfeI GAWTC 2 cut(s) 700, 941
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 3 cut(s) 384, 468, 471
PleI GAGTC 3 cut(s) 55, 415, 674
PpsI GAGTC 3 cut(s) 55, 415, 674
Ppu21I YACGTR 1 cut(s) 496
PshBI ATTAAT 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 935
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 40, 780
PspPI GGNCC 2 cut(s) 38, 117
PsrI GAACNNNNNNTAC 2 cut(s) 593, 625
PstNI CAGNNNCTG 2 cut(s) 377, 656
RsaI GTAC 5 cut(s) 53, 186, 388, 447, 602
RsaNI GTAC 5 cut(s) 52, 185, 387, 446, 601
RseI CAYNNNNRTG 5 cut(s) 671, 851, 900, 902, 969
SacI GAGCTC 1 cut(s) 935
SaqAI TTAA 5 cut(s) 191, 195, 474, 545, 669
SatI GCNGC 3 cut(s) 383, 467, 470
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 2 cut(s) 38, 117
SchI GAGTC 3 cut(s) 56, 415, 674
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 2 cut(s) 727, 935
SfaNI GCATC 5 cut(s) 360, 574, 744, 847, 973
SfcI CTRYAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 5 cut(s) 671, 851, 900, 902, 969
SphI GCATGC 1 cut(s) 575
Sse9I AATT 6 cut(s) 160, 192, 547, 617, 691, 957
SsiI CCGC 3 cut(s) 105, 382, 535
SspMI CTAG 2 cut(s) 425, 824
SstI GAGCTC 1 cut(s) 935
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 3 cut(s) 400, 622, 645
TaaI ACNGT 4 cut(s) 543, 658, 729, 913
TaiI ACGT 3 cut(s) 498, 570, 606
TaqI TCGA 3 cut(s) 155, 703, 715
TaqII GACCGA 1 cut(s) 1001
TasI AATT 6 cut(s) 160, 192, 547, 617, 691, 957
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 2 cut(s) 700, 941
Tru1I TTAA 5 cut(s) 191, 195, 474, 545, 669
Tru9I TTAA 5 cut(s) 191, 195, 474, 545, 669
TscAI CASTG 2 cut(s) 173, 378
TseFI GTSAC 2 cut(s) 373, 829
TseI GCWGC 2 cut(s) 466, 469
Tsp45I GTSAC 2 cut(s) 373, 829
TspDTI ATGAA 5 cut(s) 88, 225, 233, 541, 903
TspGWI ACGGA 2 cut(s) 20, 58
TspRI CASTG 2 cut(s) 173, 378
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 1 cut(s) 191
XapI RAATTY 2 cut(s) 547, 617
XceI RCATGY 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 1006
XspI CTAG 2 cut(s) 425, 824
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.