Rh2AG408800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014145
Physical Location & Seq
Reverse (-)
60755491 .. 60757121
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG408800.1

Sequence Viewer

Length: 759 bp
ATGTCATTTGGGGTGTATGTAACTGGAGTGATATTTCAAACAGCTTCTTTTGTGTCCTTTTTACTCATATCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAGTGACTGAGCGGCGCACTACTGCTTCCCTTGGCTGTGTGTTTTACTTGACTCTAGTTGGATACAGAGCTTCTGTACCTTATTTTTCTGTCCTGCTGCTGCTTAACTATTTTATCTCATTCTACGTGATATTCCACCATATATCTCAAAATCTGTTAGTCTTGCGGGAACAGTTAAATTTCATAGATAATGAGGACGTGCATACAATGCATGATGCAGTCTATACAAAGTACGTCATGTTCAAAAAATTCCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATACATTAACATGGATGACTCATCAGAAAATTACTGGATTCGATTATTAGTTCGAGAGTGGGCACAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGACTTGGCACCACGTTTTTCAGTTATGCCAACTTTGAAATCTAAAGGGGAACTAGCAGTCGCTCCCATTTATAGCATTGAAATGGATGCAGAAACTTTCAGAGATTTTACTCGGCATGAATGGCACATTGGTGTGCCAACTGTAAAATCTAGTGATGAGAGCTCAAAGGATTCTGTCTTGGTAATAATTCAGCATCCTCGTGCATTTAGGCTGACCGAAGCTGGAGCTGGAAAATCTTCTCAAGGCCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

252

Amino Acids

28.97

Weight (kDa)

6.7

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 115
AciI CCGC 2 cut(s) 115, 268
AcsI RAATTY 2 cut(s) 280, 350
AfaI GTAC 2 cut(s) 180, 335
AgsI TTSAA 4 cut(s) 38, 346, 541, 584
AjiI CACGTC 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AleI CACNNNNGTG 1 cut(s) 633
AluBI AGCT 6 cut(s) 44, 173, 666, 725, 731, 755
AluI AGCT 6 cut(s) 44, 173, 666, 725, 731, 755
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 1 cut(s) 380
AlwNI CAGNNNCTG 2 cut(s) 110, 389
AoxI GGCC 1 cut(s) 748
ApeKI GCWGC 2 cut(s) 199, 202
ApoI RAATTY 2 cut(s) 280, 350
Asp700I GAANNNNTTC 1 cut(s) 739
AspLEI GCGC 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 668
BauI CACGAG 1 cut(s) 702
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 2 cut(s) 186, 189
BciVI GTATCC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 3 cut(s) 158, 557, 654
BfuI GTATCC 1 cut(s) 158
BisI GCNGC 3 cut(s) 116, 200, 203
BlsI GCNGC 3 cut(s) 117, 201, 204
BmgBI CACGTC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 513
BmsI GCATC 5 cut(s) 93, 307, 477, 580, 706
BpmI CTGGAG 2 cut(s) 45, 747
BpuEI CTTGAG 1 cut(s) 729
BsaAI YACGTR 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 133, 355, 378
Bse1I ACTGG 2 cut(s) 28, 434
Bse3DI GCAATG 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 133, 355, 378
BseGI GGATG 3 cut(s) 415, 595, 697
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 28, 434
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 2 cut(s) 186, 189
BshFI GGCC 1 cut(s) 750
BshNI GGYRCC 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 668
BslFI GGGAC 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 1 cut(s) 750
Bsp1286I GDGCHC 2 cut(s) 460, 668
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 2 cut(s) 115, 268
BspANI GGCC 1 cut(s) 750
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 511
BsrBI CCGCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 2 cut(s) 28, 434
BssECI CCNNGG 3 cut(s) 133, 355, 378
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 3 cut(s) 133, 355, 378
Bst2BI CACGAG 1 cut(s) 702
Bst4CI ACNGT 4 cut(s) 276, 391, 462, 646
BstAPI GCANNNNNTGC 2 cut(s) 90, 310
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 111, 756
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 3 cut(s) 415, 595, 697
BstHHI GCGC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 380
BstMWI GCNNNNNNNGC 3 cut(s) 90, 310, 625
BstSLI GKGCMC 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 186, 189
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 750
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 3 cut(s) 415, 595, 697
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 2 cut(s) 110, 389
CfoI GCGC 1 cut(s) 120
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 179, 334
CviAII CATG 7 cut(s) 74, 88, 314, 340, 379, 406, 620
CviQI GTAC 2 cut(s) 179, 334
DdeI CTNAG 2 cut(s) 111, 756
DrdI GACNNNNNNGTC 1 cut(s) 496
DseDI GACNNNNNNGTC 1 cut(s) 496
Ecl136II GAGCTC 1 cut(s) 666
Eco130I CCWWGG 3 cut(s) 133, 355, 378
Eco24I GRGCYC 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 666
EcoICRI GAGCTC 1 cut(s) 666
EcoT14I CCWWGG 3 cut(s) 133, 355, 378
EcoT22I ATGCAT 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 668
ErhI CCWWGG 3 cut(s) 133, 355, 378
FaeI CATG 7 cut(s) 77, 91, 317, 343, 382, 409, 623
FaqI GGGAC 1 cut(s) 518
FatI CATG 7 cut(s) 73, 87, 313, 339, 378, 405, 619
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 116, 200, 203
FokI GGATG 3 cut(s) 422, 602, 684
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 3 cut(s) 116, 200, 203
FspBI CTAG 3 cut(s) 158, 557, 654
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 116, 200, 203
GsuI CTGGAG 2 cut(s) 45, 747
HaeIII GGCC 1 cut(s) 750
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 120
Hin1II CATG 7 cut(s) 77, 91, 317, 343, 382, 409, 623
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 4 cut(s) 154, 413, 433, 674
Hpy166II GTNNAC 2 cut(s) 478, 489
Hpy188I TCNGA 2 cut(s) 421, 605
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 2 cut(s) 478, 489
HpyCH4III ACNGT 4 cut(s) 276, 391, 462, 646
HpyCH4IV ACGT 4 cut(s) 228, 300, 336, 517
HpyCH4V TGCA 9 cut(s) 84, 304, 313, 320, 362, 367, 468, 593, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 310, 625
HpyF3I CTNAG 2 cut(s) 111, 756
HpySE526I ACGT 4 cut(s) 228, 300, 336, 517
Hsp92II CATG 7 cut(s) 77, 91, 317, 343, 382, 409, 623
HspAI GCGC 1 cut(s) 118
LmnI GCTCC 2 cut(s) 571, 728
LpnPI CCDG 5 cut(s) 9, 209, 415, 711, 717
Lsp1109I GCAGC 2 cut(s) 186, 189
LweI GCATC 5 cut(s) 93, 307, 477, 580, 706
MaeI CTAG 3 cut(s) 158, 557, 654
MaeII ACGT 4 cut(s) 228, 300, 336, 517
MaeIII GTNAC 3 cut(s) 19, 77, 106
MbiI CCGCTC 1 cut(s) 115
MboII GAAGA 1 cut(s) 732
MhlI GDGCHC 2 cut(s) 460, 668
MluCI AATT 4 cut(s) 280, 350, 424, 690
MlyI GAGTC 2 cut(s) 148, 407
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 289, 711
Mph1103I ATGCAT 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 739
MseI TTAA 3 cut(s) 207, 278, 402
MslI CAYNNNNRTG 5 cut(s) 404, 584, 633, 635, 702
MwoI GCNNNNNNNGC 3 cut(s) 90, 310, 625
NcoI CCATGG 1 cut(s) 378
NlaIII CATG 7 cut(s) 77, 91, 317, 343, 382, 409, 623
NlaIV GGNNCC 1 cut(s) 513
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 739
PfeI GAWTC 2 cut(s) 433, 674
PkrI GCNGC 3 cut(s) 117, 201, 204
PleI GAGTC 2 cut(s) 148, 407
PpsI GAGTC 2 cut(s) 148, 407
Ppu21I YACGTR 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 668
PspN4I GGNNCC 1 cut(s) 513
PsrI GAACNNNNNNTAC 2 cut(s) 326, 358
PstNI CAGNNNCTG 2 cut(s) 110, 389
RsaI GTAC 2 cut(s) 180, 335
RsaNI GTAC 2 cut(s) 179, 334
RseI CAYNNNNRTG 5 cut(s) 404, 584, 633, 635, 702
SacI GAGCTC 1 cut(s) 668
SaqAI TTAA 3 cut(s) 207, 278, 402
SatI GCNGC 3 cut(s) 116, 200, 203
SchI GAGTC 2 cut(s) 148, 407
SduI GDGCHC 2 cut(s) 460, 668
SfaNI GCATC 5 cut(s) 93, 307, 477, 580, 706
SmiMI CAYNNNNRTG 5 cut(s) 404, 584, 633, 635, 702
SmlI CTYRAG 1 cut(s) 744
SmoI CTYRAG 1 cut(s) 744
Sse9I AATT 4 cut(s) 280, 350, 424, 690
SsiI CCGC 2 cut(s) 115, 268
SspMI CTAG 3 cut(s) 158, 557, 654
SstI GAGCTC 1 cut(s) 668
StyI CCWWGG 3 cut(s) 133, 355, 378
TaaI ACNGT 4 cut(s) 276, 391, 462, 646
TaiI ACGT 4 cut(s) 231, 303, 339, 520
TaqI TCGA 2 cut(s) 436, 448
TaqII GACCGA 1 cut(s) 734
TasI AATT 4 cut(s) 280, 350, 424, 690
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 2 cut(s) 433, 674
Tru1I TTAA 3 cut(s) 207, 278, 402
Tru9I TTAA 3 cut(s) 207, 278, 402
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 199, 202
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 274, 636
TspRI CASTG 1 cut(s) 111
XapI RAATTY 2 cut(s) 280, 350
XmnI GAANNNNTTC 1 cut(s) 739
XspI CTAG 3 cut(s) 158, 557, 654
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.