MD09G1206800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014145
Physical Location & Seq
Forward (+)
19828415 .. 19831248
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1206800.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGATTAAGATCCCGATTCGCAGAATGGCCGAATTGGAGAGCGTCGGAGAGTATCGTATCGGACTCGACGAGTCGTATCGGTATCTCCCGTCGGTCTACTTAGCCTTCTTGACAATCTGGTTTGTCTCGGCCTGCTCCTGGACCTTCAACACCTACAAAAACCGCCATCTCCAGACGAATAATTTGCAATGGACGCTCGCATCCGTTCCGTTGATTAAAGCCTTGCAACTCACATTGTCTTTCCTCTTTTGGTATTCGTGTTTTCATCTTCAAATATGCTCCCTGTGGATGTCATTTGGGGTGTACGTTACCGGAGTGATATTTCAGACAGCTTCTTTTGTGTCGTTTTTACTCATCTCTCATGGTTACTGCATCATGTGTGAGCGTCTTTCAGTGACTGAGCGGCGTACTACTGCTTCCCTTGGCTGTTTCATTTACTTGACTCTTGTCGGATACAGGGCTTCTGTACCTTATTTCTCTGTCTTGCTGCTGCTTAACTATTTAATCTCATTCTATGTGATATTTCACCATATATCGCAAAATCTTTTAGTATTGCGCCACCAATTAAGCTTCATAGATGACGAGGATGTTCGCGCAATGCATGATGCAGTCTATACGAAGTACATCATGTTCAAAAAGTTTCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATACATTAACATGGACGACTCATCAGAAAATTACTGGATACGCTTGTTAGTTCGAGAATGGGCACAGTTCTGCATCTTTGTTTACATCGGGTGGACTTTTAGGTCAAGGGACTTGGCACCGCGATTTTCTATTATGCCGGCACTGAAATCTAAAGGGGAACTAGTGGTGCCTCCCGTTTATAGCATCGAAATGGATGCAGAAACTTTCAGAGATTTCACTAAGCATGAATGGCACATCGGAGTGCCAACTTCACCTTCTTGTGCCAAAAGCACTAAGGATTCCGTCTTGGTAATAATTCAGCATCCTCACGCACATAGAATGACTGCGGCCGGAGAATCCTCTCAAAGCCAAGACCAGAAGCCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

351

Amino Acids

40.64

Weight (kDa)

8.34

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 784
AccB1I GGYRCC 2 cut(s) 799, 850
AccBSI CCGCTC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 594, 805
AciI CCGC 4 cut(s) 163, 403, 803, 1010
AclWI GGATC 1 cut(s) 4
AcoI YGGCCR 2 cut(s) 27, 1011
AfaI GTAC 4 cut(s) 305, 409, 468, 623
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 4 cut(s) 148, 272, 634, 644
AhlI ACTAGT 1 cut(s) 844
AjnI CCWGG 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
AluBI AGCT 2 cut(s) 332, 570
AluI AGCT 2 cut(s) 332, 570
Alw26I GTCTC 2 cut(s) 130, 668
AlwI GGATC 1 cut(s) 4
AlwNI CAGNNNCTG 2 cut(s) 398, 677
AoxI GGCC 3 cut(s) 27, 129, 1011
ApeKI GCWGC 2 cut(s) 487, 490
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspLEI GCGC 2 cut(s) 558, 596
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 518, 927
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 748
BaeI ACNNNNGTAYC 2 cut(s) 713, 746
BanI GGYRCC 2 cut(s) 799, 850
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbvI GCAGC 2 cut(s) 474, 477
BccI CCATC 1 cut(s) 174
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 860, 894
BciT130I CCWGG 1 cut(s) 139
BciVI GTATCC 2 cut(s) 446, 714
BcoDI GTCTC 2 cut(s) 130, 668
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 1 cut(s) 845
BfuI GTATCC 2 cut(s) 446, 714
BisI GCNGC 4 cut(s) 404, 488, 491, 1011
BlsI GCNGC 4 cut(s) 405, 489, 492, 1012
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 801, 852
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 7 cut(s) 209, 381, 595, 765, 868, 876, 994
BoxI GACNNNNGTC 1 cut(s) 446
BpmI CTGGAG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 421, 666
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 820
Bse1I ACTGG 2 cut(s) 722, 1046
Bse3DI GCAATG 3 cut(s) 194, 603, 657
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 421, 666
BseGI GGATG 5 cut(s) 200, 294, 592, 883, 985
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 3 cut(s) 194, 603, 657
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 722, 1046
BseSI GKGCMC 1 cut(s) 748
BseX3I CGGCCG 1 cut(s) 1011
BseXI GCAGC 2 cut(s) 474, 477
Bsh1236I CGCG 2 cut(s) 594, 805
Bsh1285I CGRYCG 1 cut(s) 1014
BshFI GGCC 3 cut(s) 29, 131, 1013
BshNI GGYRCC 2 cut(s) 799, 850
BsiEI CGRYCG 1 cut(s) 1014
BsiSI CCGG 3 cut(s) 312, 821, 1014
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 130, 668
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 3 cut(s) 29, 131, 1013
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 4 cut(s) 163, 403, 803, 1010
BspANI GGCC 3 cut(s) 29, 131, 1013
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 2 cut(s) 594, 805
BspLI GGNNCC 2 cut(s) 801, 852
BspPI GGATC 1 cut(s) 4
BspT107I GGYRCC 2 cut(s) 799, 850
BsrBI CCGCTC 1 cut(s) 403
BsrDI GCAATG 3 cut(s) 194, 603, 657
BsrFI RCCGGY 1 cut(s) 820
BsrI ACTGG 2 cut(s) 722, 1046
BssAI RCCGGY 1 cut(s) 820
BssECI CCNNGG 2 cut(s) 421, 666
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 421, 666
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 679, 750
BstC8I GCNNGC 3 cut(s) 133, 198, 822
BstDEI CTNAG 4 cut(s) 100, 399, 903, 957
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 5 cut(s) 200, 294, 592, 883, 985
BstFNI CGCG 2 cut(s) 594, 805
BstHHI GCGC 2 cut(s) 558, 596
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 130, 668
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 1014
BstMWI GCNNNNNNNGC 2 cut(s) 193, 913
BstNI CCWGG 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 748
BstUI CGCG 2 cut(s) 594, 805
BstV1I GCAGC 2 cut(s) 474, 477
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BstZI CGGCCG 1 cut(s) 1011
BsuI GTATCC 2 cut(s) 446, 714
BsuRI GGCC 3 cut(s) 29, 131, 1013
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 5 cut(s) 200, 294, 592, 883, 985
BtsIMutI CAGTG 3 cut(s) 399, 824, 1053
Cac8I GCNNGC 3 cut(s) 133, 198, 822
CaiI CAGNNNCTG 2 cut(s) 398, 677
CfoI GCGC 2 cut(s) 558, 596
Cfr10I RCCGGY 1 cut(s) 820
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 3 cut(s) 31, 202, 374
Csp6I GTAC 4 cut(s) 304, 408, 467, 622
CviAII CATG 7 cut(s) 362, 376, 602, 628, 667, 694, 908
CviQI GTAC 4 cut(s) 304, 408, 467, 622
DdeI CTNAG 4 cut(s) 100, 399, 903, 957
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DrdI GACNNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 784
EaeI YGGCCR 2 cut(s) 27, 1011
EagI CGGCCG 1 cut(s) 1011
EclXI CGGCCG 1 cut(s) 1011
Eco130I CCWWGG 2 cut(s) 421, 666
Eco47I GGWCC 1 cut(s) 141
Eco52I CGGCCG 1 cut(s) 1011
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 2 cut(s) 421, 666
EcoT22I ATGCAT 1 cut(s) 603
ErhI CCWWGG 2 cut(s) 421, 666
FaeI CATG 7 cut(s) 365, 379, 605, 631, 670, 697, 911
FaqI GGGAC 1 cut(s) 806
FatI CATG 7 cut(s) 361, 375, 601, 627, 666, 693, 907
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 404, 488, 491, 1011
FokI GGATG 5 cut(s) 187, 301, 599, 890, 972
Fsp4HI GCNGC 4 cut(s) 404, 488, 491, 1011
FspBI CTAG 1 cut(s) 845
GlaI GCGC 2 cut(s) 557, 595
GluI GCNGC 4 cut(s) 404, 488, 491, 1011
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 3 cut(s) 29, 131, 1013
HapII CCGG 3 cut(s) 312, 821, 1014
HgaI GACGC 3 cut(s) 31, 202, 374
HhaI GCGC 2 cut(s) 558, 596
Hin1II CATG 7 cut(s) 365, 379, 605, 631, 670, 697, 911
Hin6I GCGC 2 cut(s) 556, 594
HinP1I GCGC 2 cut(s) 556, 594
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 7 cut(s) 16, 63, 71, 442, 701, 962, 1019
HpaII CCGG 3 cut(s) 312, 821, 1014
HphI GGTGA 2 cut(s) 518, 927
Hpy166II GTNNAC 4 cut(s) 97, 304, 766, 777
Hpy188I TCNGA 7 cut(s) 47, 62, 327, 452, 709, 893, 923
Hpy188III TCNNGA 4 cut(s) 13, 109, 172, 737
Hpy8I GTNNAC 4 cut(s) 97, 304, 766, 777
Hpy99I CGWCG 3 cut(s) 47, 71, 94
HpyAV CCTTC 3 cut(s) 115, 154, 948
HpyCH4III ACNGT 2 cut(s) 679, 750
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 9 cut(s) 187, 226, 372, 601, 608, 650, 655, 756, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 913
HpyF3I CTNAG 4 cut(s) 100, 399, 903, 957
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 7 cut(s) 365, 379, 605, 631, 670, 697, 911
HspAI GCGC 2 cut(s) 556, 594
KroI GCCGGC 1 cut(s) 820
KroNI GCCGGC 1 cut(s) 822
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 140, 284
Lsp1109I GCAGC 2 cut(s) 474, 477
LweI GCATC 7 cut(s) 209, 381, 595, 765, 868, 876, 994
MaeI CTAG 1 cut(s) 845
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 307, 365, 394
MalI GATC 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 403
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 260
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 5 cut(s) 32, 181, 563, 712, 978
MlyI GAGTC 4 cut(s) 57, 80, 436, 695
MmeI TCCRAC 2 cut(s) 25, 430
MnlI CCTC 5 cut(s) 254, 577, 864, 999, 1033
Mph1103I ATGCAT 1 cut(s) 603
MroNI GCCGGC 1 cut(s) 820
MseI TTAA 6 cut(s) 6, 216, 495, 503, 566, 690
MslI CAYNNNNRTG 3 cut(s) 692, 872, 923
MspI CCGG 3 cut(s) 312, 821, 1014
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 2 cut(s) 594, 805
MwoI GCNNNNNNNGC 2 cut(s) 193, 913
NaeI GCCGGC 1 cut(s) 822
NcoI CCATGG 1 cut(s) 666
NdeII GATC 1 cut(s) 9
NgoMIV GCCGGC 1 cut(s) 820
NlaIII CATG 7 cut(s) 365, 379, 605, 631, 670, 697, 911
NlaIV GGNNCC 2 cut(s) 801, 852
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 822
PfeI GAWTC 3 cut(s) 16, 962, 1019
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 4 cut(s) 405, 489, 492, 1012
PleI GAGTC 4 cut(s) 57, 79, 436, 695
PpsI GAGTC 4 cut(s) 57, 79, 436, 695
PshAI GACNNNNGTC 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 801, 852
PspPI GGNCC 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PstNI CAGNNNCTG 2 cut(s) 398, 677
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 4 cut(s) 305, 409, 468, 623
RsaNI GTAC 4 cut(s) 304, 408, 467, 622
RseI CAYNNNNRTG 3 cut(s) 692, 872, 923
SaqAI TTAA 6 cut(s) 6, 216, 495, 503, 566, 690
SatI GCNGC 4 cut(s) 404, 488, 491, 1011
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 4 cut(s) 57, 80, 436, 695
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 748
SetI ASST 9 cut(s) 146, 155, 309, 334, 472, 572, 649, 788, 940
SfaNI GCATC 7 cut(s) 209, 381, 595, 765, 868, 876, 994
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 3 cut(s) 692, 872, 923
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 5 cut(s) 32, 181, 563, 712, 978
SsiI CCGC 4 cut(s) 163, 403, 803, 1010
SspMI CTAG 1 cut(s) 845
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 2 cut(s) 421, 666
TaaI ACNGT 2 cut(s) 679, 750
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 66, 736, 870
TaqII GACCGA 1 cut(s) 82
TasI AATT 5 cut(s) 32, 181, 563, 712, 978
TatI WGTACW 1 cut(s) 621
TauI GCSGC 2 cut(s) 406, 1013
TfiI GAWTC 3 cut(s) 16, 962, 1019
Tru1I TTAA 6 cut(s) 6, 216, 495, 503, 566, 690
Tru9I TTAA 6 cut(s) 6, 216, 495, 503, 566, 690
TscAI CASTG 3 cut(s) 399, 831, 1053
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 2 cut(s) 487, 490
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 254, 421, 562, 924
TspGWI ACGGA 3 cut(s) 193, 198, 955
TspRI CASTG 3 cut(s) 399, 831, 1053
VpaK11BI GGWCC 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 845
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.