RchiOBHm_Chr2g0139631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014145
Physical Location & Seq
Reverse (-)
57161338 .. 57164695
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51016

Sequence Viewer

Length: 1047 bp
ATGATTAAGCTTCCGATTCGGAGAATGACGGAAATGGAGAGCGCCGGAGAGTATCATATCGGCCCCGACGAGTCGTACCGGTCTCTGCCGTCGGTTTACTTGGCCTTCTTGACAATCTGGTTCATCTCCGCCTGCTCCTGGACCTTCAACACCTACAAAAACCGCCACCTCCAGTCGAATAATTTGCAGTGGACCCTCACATCTGTACCATTAATTAAAGCCTTGCAACTCACATTGTCTTTCCTCTTCTGGTATTCATGCTTTCATCTACAGATATGCTCTCTGTGGATGTCATTTGGGGTGTATGTAACTGGAGTGATATTTCAAACAGCTTCTTTTGTGTCCTTTTTACTCATATCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAGTGACTGAGCGGCGTACTACTGCTTCCCTTGGCTGTGTGTTTTACTTGACTCTAGTTGGATACAGAGCTTCTGTACCTTATTTTTCTGTCCTGCTGCTGCTTAACTATTTTATCTCATTCTACGTGATATTCCACCATATATCTCAAAATCTGTTAGTATTGCGGGAACAGTTAAATTTCATTGATAATGAGGACGTGCATGCAATGCATGATGCAGTCTATACAAAGTACATCATGTTCAAAAAATTCCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATATATTAACATGGATGACTCATCAGAAAATTACTGGATTCGATTATTAGTTCGAGAGTGGGCACAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGACTTGGCTCCACGTTTTTCAGTTATGCCAACTTTGAAATCTAAAGGGGAACTAGCAGTCGCTCCCATTTATAGCATTGAAATGGATGCAGAAACTTTCAGAGATTTTACTCGGCATGAATGGCACATTGGTGTGCCAACTGTAAAATCTAGTGATGAGAGCTCAAAGGATTCTGTCTTGGTAATAATCCAGCATCCTCGTGCATTTAGGGTGACCGAACCTGGTGCTGGAAAATCTTCTCAAGGCCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

348

Amino Acids

40.34

Weight (kDa)

7.65

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 784
AccBSI CCGCTC 1 cut(s) 403
AciI CCGC 4 cut(s) 129, 163, 403, 556
AcsI RAATTY 2 cut(s) 568, 638
AfaI GTAC 5 cut(s) 77, 207, 409, 468, 623
AfiI CCNNNNNNNGG 2 cut(s) 138, 1019
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 5 cut(s) 148, 326, 634, 829, 872
AjiI CACGTC 1 cut(s) 589
AjnI CCWGG 2 cut(s) 137, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
AleI CACNNNNGTG 1 cut(s) 921
AluBI AGCT 5 cut(s) 10, 332, 461, 954, 1043
AluI AGCT 5 cut(s) 10, 332, 461, 954, 1043
Alw21I GWGCWC 1 cut(s) 956
Alw26I GTCTC 2 cut(s) 87, 668
AlwNI CAGNNNCTG 2 cut(s) 398, 677
AoxI GGCC 3 cut(s) 61, 102, 1036
ApeKI GCWGC 2 cut(s) 487, 490
ApoI RAATTY 2 cut(s) 568, 638
AseI ATTAAT 1 cut(s) 212
AsiGI ACCGGT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 1027
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 3 cut(s) 62, 141, 192
AsuHPI GGTGA 1 cut(s) 1015
AvaII GGWCC 2 cut(s) 141, 192
BaeGI GKGCMC 1 cut(s) 748
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BanII GRGCYC 1 cut(s) 956
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BauI CACGAG 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 956
BbvI GCAGC 2 cut(s) 474, 477
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 998, 1032
BciT130I CCWGG 2 cut(s) 139, 1014
BciVI GTATCC 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 87, 668
BfaI CTAG 3 cut(s) 446, 845, 942
BfmI CTRYAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 45
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 3 cut(s) 404, 488, 491
BlsI GCNGC 3 cut(s) 405, 489, 492
Bme1390I CCNGG 2 cut(s) 139, 1014
Bme18I GGWCC 2 cut(s) 141, 192
BmgBI CACGTC 1 cut(s) 589
BmgT120I GGNCC 3 cut(s) 62, 141, 192
BmiI GGNNCC 3 cut(s) 64, 194, 801
BmrFI CCNGG 2 cut(s) 139, 1014
BmsI GCATC 5 cut(s) 381, 595, 765, 868, 994
BpmI CTGGAG 2 cut(s) 155, 333
BpuEI CTTGAG 1 cut(s) 1017
BsaAI YACGTR 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 421, 643, 666
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 1019
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 3 cut(s) 172, 316, 722
Bse3DI GCAATG 2 cut(s) 603, 657
BseBI CCWGG 2 cut(s) 139, 1014
BseDI CCNNGG 3 cut(s) 421, 643, 666
BseGI GGATG 4 cut(s) 294, 703, 883, 985
BseLI CCNNNNNNNGG 2 cut(s) 138, 1019
BseMI GCAATG 2 cut(s) 603, 657
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 3 cut(s) 172, 316, 722
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 2 cut(s) 474, 477
BshFI GGCC 3 cut(s) 63, 104, 1038
BshTI ACCGGT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 956
BsiSI CCGG 2 cut(s) 45, 79
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 2 cut(s) 138, 1019
BsmAI GTCTC 2 cut(s) 87, 668
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 3 cut(s) 63, 104, 1038
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 748, 956
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 4 cut(s) 129, 163, 403, 556
BspANI GGCC 3 cut(s) 63, 104, 1038
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 64, 194, 801
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 403
BsrDI GCAATG 2 cut(s) 603, 657
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 3 cut(s) 172, 316, 722
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 421, 643, 666
BssSI CACGAG 1 cut(s) 990
BssT1I CCWWGG 3 cut(s) 421, 643, 666
Bst2BI CACGAG 1 cut(s) 990
Bst2UI CCWGG 2 cut(s) 139, 1014
Bst4CI ACNGT 4 cut(s) 564, 679, 750, 934
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 2 cut(s) 378, 598
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 3 cut(s) 133, 383, 594
BstDEI CTNAG 2 cut(s) 399, 1044
BstDSI CCRYGG 1 cut(s) 666
BstEII GGTNACC 1 cut(s) 1003
BstF5I GGATG 4 cut(s) 294, 703, 883, 985
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstMAI GTCTC 2 cut(s) 87, 668
BstMWI GCNNNNNNNGC 3 cut(s) 378, 598, 913
BstNI CCWGG 2 cut(s) 139, 1014
BstNSI RCATGY 1 cut(s) 596
BstPI GGTNACC 1 cut(s) 1003
BstSCI CCNGG 2 cut(s) 137, 1012
BstSFI CTRYAG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 2 cut(s) 474, 477
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 3 cut(s) 63, 104, 1038
BtgI CCRYGG 1 cut(s) 666
BtrI CACGTC 1 cut(s) 589
BtsCI GGATG 4 cut(s) 294, 703, 883, 985
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 194, 399
Cac8I GCNNGC 3 cut(s) 133, 383, 594
CaiI CAGNNNCTG 2 cut(s) 398, 677
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 62, 141, 192
CseI GACGC 1 cut(s) 374
CsiI ACCWGGT 1 cut(s) 1012
Csp6I GTAC 5 cut(s) 76, 206, 408, 467, 622
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 9 cut(s) 258, 362, 376, 593, 602, 628, 667, 694, 908
CviQI GTAC 5 cut(s) 76, 206, 408, 467, 622
DdeI CTNAG 2 cut(s) 399, 1044
DrdI GACNNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 954
Eco130I CCWWGG 3 cut(s) 421, 643, 666
Eco24I GRGCYC 1 cut(s) 956
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 141, 192
Eco53kI GAGCTC 1 cut(s) 954
Eco91I GGTNACC 1 cut(s) 1003
EcoICRI GAGCTC 1 cut(s) 954
EcoO65I GGTNACC 1 cut(s) 1003
EcoRII CCWGG 2 cut(s) 137, 1012
EcoT14I CCWWGG 3 cut(s) 421, 643, 666
EcoT22I ATGCAT 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 3 cut(s) 421, 643, 666
FaeI CATG 9 cut(s) 261, 365, 379, 596, 605, 631, 670, 697, 911
FaqI GGGAC 1 cut(s) 806
FatI CATG 9 cut(s) 257, 361, 375, 592, 601, 627, 666, 693, 907
FauI CCCGC 1 cut(s) 549
Fnu4HI GCNGC 3 cut(s) 404, 488, 491
FokI GGATG 4 cut(s) 301, 710, 890, 972
FriOI GRGCYC 1 cut(s) 956
Fsp4HI GCNGC 3 cut(s) 404, 488, 491
FspBI CTAG 3 cut(s) 446, 845, 942
GlaI GCGC 1 cut(s) 43
GluI GCNGC 3 cut(s) 404, 488, 491
GsuI CTGGAG 2 cut(s) 155, 333
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 63, 104, 1038
HapII CCGG 2 cut(s) 45, 79
HgaI GACGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 44
Hin1II CATG 9 cut(s) 261, 365, 379, 596, 605, 631, 670, 697, 911
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 2 cut(s) 8, 1041
HinfI GANTC 6 cut(s) 16, 71, 442, 701, 721, 962
HpaII CCGG 2 cut(s) 45, 79
HphI GGTGA 1 cut(s) 1015
Hpy166II GTNNAC 4 cut(s) 97, 192, 766, 777
Hpy188I TCNGA 4 cut(s) 15, 21, 709, 893
Hpy188III TCNNGA 2 cut(s) 109, 737
Hpy8I GTNNAC 4 cut(s) 97, 192, 766, 777
Hpy99I CGWCG 2 cut(s) 71, 94
HpyAV CCTTC 2 cut(s) 115, 154
HpyCH4III ACNGT 4 cut(s) 564, 679, 750, 934
HpyCH4IV ACGT 3 cut(s) 516, 588, 805
HpyF10VI GCNNNNNNNGC 3 cut(s) 378, 598, 913
HpyF3I CTNAG 2 cut(s) 399, 1044
HpySE526I ACGT 3 cut(s) 516, 588, 805
Hsp92II CATG 9 cut(s) 261, 365, 379, 596, 605, 631, 670, 697, 911
HspAI GCGC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 140, 805, 859
Lsp1109I GCAGC 2 cut(s) 474, 477
LweI GCATC 5 cut(s) 381, 595, 765, 868, 994
MabI ACCWGGT 1 cut(s) 1012
MaeI CTAG 3 cut(s) 446, 845, 942
MaeII ACGT 3 cut(s) 516, 588, 805
MaeIII GTNAC 4 cut(s) 307, 365, 394, 1003
MbiI CCGCTC 1 cut(s) 403
MboII GAAGA 2 cut(s) 238, 1020
MhlI GDGCHC 2 cut(s) 748, 956
MluCI AATT 5 cut(s) 181, 213, 568, 638, 712
MlyI GAGTC 3 cut(s) 80, 436, 695
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 5 cut(s) 179, 206, 254, 577, 999
Mph1103I ATGCAT 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 1027
MseI TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
MslI CAYNNNNRTG 4 cut(s) 872, 921, 923, 990
MspI CCGG 2 cut(s) 45, 79
MspR9I CCNGG 2 cut(s) 139, 1014
MvaI CCWGG 2 cut(s) 139, 1014
MwoI GCNNNNNNNGC 3 cut(s) 378, 598, 913
NcoI CCATGG 1 cut(s) 666
NlaIII CATG 9 cut(s) 261, 365, 379, 596, 605, 631, 670, 697, 911
NlaIV GGNNCC 3 cut(s) 64, 194, 801
NmeAIII GCCGAG 1 cut(s) 883
NmuCI GTSAC 2 cut(s) 394, 1003
NsiI ATGCAT 1 cut(s) 603
NspI RCATGY 1 cut(s) 596
OliI CACNNNNGTG 1 cut(s) 921
PacI TTAATTAA 1 cut(s) 216
PaeI GCATGC 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 1027
PfeI GAWTC 3 cut(s) 16, 721, 962
PfoI TCCNGGA 1 cut(s) 137
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 3 cut(s) 405, 489, 492
PleI GAGTC 3 cut(s) 79, 436, 695
PpsI GAGTC 3 cut(s) 79, 436, 695
Ppu21I YACGTR 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 137, 1012
PspEI GGTNACC 1 cut(s) 1003
PspGI CCWGG 2 cut(s) 137, 1012
PspN4I GGNNCC 3 cut(s) 64, 194, 801
PspPI GGNCC 3 cut(s) 62, 141, 192
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PstNI CAGNNNCTG 2 cut(s) 398, 677
RsaI GTAC 5 cut(s) 77, 207, 409, 468, 623
RsaNI GTAC 5 cut(s) 76, 206, 408, 467, 622
RseI CAYNNNNRTG 4 cut(s) 872, 921, 923, 990
SacI GAGCTC 1 cut(s) 956
SaqAI TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
SatI GCNGC 3 cut(s) 404, 488, 491
Sau96I GGNCC 3 cut(s) 62, 141, 192
SchI GAGTC 3 cut(s) 80, 436, 695
ScrFI CCNGG 2 cut(s) 139, 1014
SduI GDGCHC 2 cut(s) 748, 956
SexAI ACCWGGT 1 cut(s) 1012
SfaNI GCATC 5 cut(s) 381, 595, 765, 868, 994
SfcI CTRYAG 1 cut(s) 269
SinI GGWCC 2 cut(s) 141, 192
SmiMI CAYNNNNRTG 4 cut(s) 872, 921, 923, 990
SmlI CTYRAG 1 cut(s) 1032
SmoI CTYRAG 1 cut(s) 1032
SphI GCATGC 1 cut(s) 596
Sse9I AATT 5 cut(s) 181, 213, 568, 638, 712
SsiI CCGC 4 cut(s) 129, 163, 403, 556
SspMI CTAG 3 cut(s) 446, 845, 942
SstI GAGCTC 1 cut(s) 956
StyD4I CCNGG 2 cut(s) 137, 1012
StyI CCWWGG 3 cut(s) 421, 643, 666
TaaI ACNGT 4 cut(s) 564, 679, 750, 934
TaiI ACGT 3 cut(s) 519, 591, 808
TaqI TCGA 3 cut(s) 176, 724, 736
TaqII GACCGA 1 cut(s) 1022
TasI AATT 5 cut(s) 181, 213, 568, 638, 712
TatI WGTACW 1 cut(s) 621
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 3 cut(s) 16, 721, 962
Tru1I TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
Tru9I TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
TscAI CASTG 2 cut(s) 194, 399
TseFI GTSAC 2 cut(s) 394, 1003
TseI GCWGC 2 cut(s) 487, 490
Tsp45I GTSAC 2 cut(s) 394, 1003
TspDTI ATGAA 5 cut(s) 112, 246, 254, 562, 924
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 2 cut(s) 194, 399
VpaK11BI GGWCC 2 cut(s) 141, 192
VspI ATTAAT 1 cut(s) 212
XapI RAATTY 2 cut(s) 568, 638
XceI RCATGY 1 cut(s) 596
XmnI GAANNNNTTC 1 cut(s) 1027
XspI CTAG 3 cut(s) 446, 845, 942
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.