Rh2CG394700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014145
Physical Location & Seq
Reverse (-)
53728733 .. 53732711
3979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG394700.1

Sequence Viewer

Length: 951 bp
ATGATTAAGCTTCCGATTCGGAGAATGACGGAAATGGAGAGCGCCGGAGAGTATCATATCGGCCCCGACGAGTCGTACCGGTCTCTGCCGTCGGTTTACTTGGCCTTCTTGACAATCTGGTTCATCTCCGCCTGCTCCTGGACCTTCAACACCTACAAAAACCGCCACCTCCAGTCGAATAATTTGCAGTGGACGCTCACATCTGTACCATTAATTAAAGCCTTGCAACTCACATTGTCTTTCATCTTCTGGTATTCATGCTTTCATCTACAGATATGCTCTCTGTGGATGTCATTTGGGGTGTATGTAACTGGAGTGATATTTCAAACAGCTTCTTTTGTGTCCTTTTTACTCATATCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAGTGACTGAGCGGCGCACTACTGCTTCCCTTGGCTGTGTGTTTTACTTGACTCTAGTTGGATACAGAGCTTCTGTACCTTATTTTTCTGTCCTGCTGCTGCTTAACTATTTTATCTCATTCTACGTGATATTCCACCATATATCTCAAAATCTGTTAGTCTTGCGGGAACAGTTAAATTTCATAGATAATGAGGACGTGCATACAATGCATGATGCAGTCTATACAAAGTACGTCATGTTCAAAAAATTCCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATACATTAACATGGATGACTCATCAGAAAATTACTGGATTCGATTATTAGTTCGAGAGTGGGCACAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGACTTGGCACCACGTTTTTCAGTTATGCCAACTTTGAAATCTAAAGGGGAACTAGCAGTCGCTCCCATTTATAGCATTGAAATGGATGCAGAAACTTTCAGAGATTTTACTCGGCATGAATGGCACATTGGTGTGGTAAGCAATAGGAACATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

316

Amino Acids

37.1

Weight (kDa)

7.64

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 784
AccB1I GGYRCC 1 cut(s) 799
AccBSI CCGCTC 1 cut(s) 403
AciI CCGC 4 cut(s) 129, 163, 403, 556
AcsI RAATTY 2 cut(s) 568, 638
AfaI GTAC 4 cut(s) 77, 207, 468, 623
AfiI CCNNNNNNNGG 1 cut(s) 138
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 5 cut(s) 148, 326, 634, 829, 872
AjiI CACGTC 1 cut(s) 589
AjnI CCWGG 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
AleI CACNNNNGTG 1 cut(s) 921
AluBI AGCT 3 cut(s) 10, 332, 461
AluI AGCT 3 cut(s) 10, 332, 461
Alw26I GTCTC 2 cut(s) 87, 668
AlwNI CAGNNNCTG 2 cut(s) 398, 677
AoxI GGCC 2 cut(s) 61, 102
ApeKI GCWGC 2 cut(s) 487, 490
ApoI RAATTY 2 cut(s) 568, 638
AseI ATTAAT 1 cut(s) 212
AsiGI ACCGGT 1 cut(s) 78
AspLEI GCGC 2 cut(s) 44, 408
AspS9I GGNCC 2 cut(s) 62, 141
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 748
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BanI GGYRCC 1 cut(s) 799
BbvI GCAGC 2 cut(s) 474, 477
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 139
BciVI GTATCC 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 87, 668
BfaI CTAG 2 cut(s) 446, 845
BfmI CTRYAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 45
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 3 cut(s) 404, 488, 491
BlsI GCNGC 3 cut(s) 405, 489, 492
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 589
BmgT120I GGNCC 2 cut(s) 62, 141
BmiI GGNNCC 2 cut(s) 64, 801
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 4 cut(s) 381, 595, 765, 868
BpmI CTGGAG 2 cut(s) 155, 333
BsaAI YACGTR 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 421, 643, 666
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 78
Bse1I ACTGG 3 cut(s) 172, 316, 722
Bse3DI GCAATG 1 cut(s) 657
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 3 cut(s) 421, 643, 666
BseGI GGATG 3 cut(s) 294, 703, 883
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 657
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 3 cut(s) 172, 316, 722
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 2 cut(s) 474, 477
BshFI GGCC 2 cut(s) 63, 104
BshNI GGYRCC 1 cut(s) 799
BshTI ACCGGT 1 cut(s) 78
BsiSI CCGG 2 cut(s) 45, 79
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 87, 668
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 2 cut(s) 63, 104
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 748
Bsp19I CCATGG 1 cut(s) 666
BspACI CCGC 4 cut(s) 129, 163, 403, 556
BspANI GGCC 2 cut(s) 63, 104
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 64, 801
BspT107I GGYRCC 1 cut(s) 799
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 657
BsrFI RCCGGY 1 cut(s) 78
BsrI ACTGG 3 cut(s) 172, 316, 722
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 421, 643, 666
BssT1I CCWWGG 3 cut(s) 421, 643, 666
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 564, 679, 750
BstAPI GCANNNNNTGC 2 cut(s) 378, 598
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 133, 383
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 294, 703, 883
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 2 cut(s) 44, 408
BstMAI GTCTC 2 cut(s) 87, 668
BstMWI GCNNNNNNNGC 4 cut(s) 193, 378, 598, 913
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 2 cut(s) 474, 477
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 2 cut(s) 63, 104
BtgI CCRYGG 1 cut(s) 666
BtrI CACGTC 1 cut(s) 589
BtsCI GGATG 3 cut(s) 294, 703, 883
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 194, 399
Cac8I GCNNGC 2 cut(s) 133, 383
CaiI CAGNNNCTG 2 cut(s) 398, 677
CfoI GCGC 2 cut(s) 44, 408
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 62, 141
CseI GACGC 2 cut(s) 202, 374
Csp6I GTAC 4 cut(s) 76, 206, 467, 622
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 9 cut(s) 258, 362, 376, 602, 628, 667, 694, 908, 943
CviJI RGCY 8 cut(s) 10, 63, 104, 221, 332, 426, 461, 665
CviKI_1 RGCY 8 cut(s) 10, 63, 104, 221, 332, 426, 461, 665
CviQI GTAC 4 cut(s) 76, 206, 467, 622
DdeI CTNAG 1 cut(s) 399
DrdI GACNNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 784
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 421, 643, 666
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 3 cut(s) 421, 643, 666
EcoT22I ATGCAT 1 cut(s) 603
ErhI CCWWGG 3 cut(s) 421, 643, 666
FaeI CATG 9 cut(s) 261, 365, 379, 605, 631, 670, 697, 911, 946
FaqI GGGAC 1 cut(s) 806
FatI CATG 9 cut(s) 257, 361, 375, 601, 627, 666, 693, 907, 942
FauI CCCGC 1 cut(s) 549
Fnu4HI GCNGC 3 cut(s) 404, 488, 491
FokI GGATG 3 cut(s) 301, 710, 890
Fsp4HI GCNGC 3 cut(s) 404, 488, 491
FspBI CTAG 2 cut(s) 446, 845
GlaI GCGC 2 cut(s) 43, 407
GluI GCNGC 3 cut(s) 404, 488, 491
GsuI CTGGAG 2 cut(s) 155, 333
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 2 cut(s) 63, 104
HapII CCGG 2 cut(s) 45, 79
HgaI GACGC 2 cut(s) 202, 374
HhaI GCGC 2 cut(s) 44, 408
Hin1II CATG 9 cut(s) 261, 365, 379, 605, 631, 670, 697, 911, 946
Hin6I GCGC 2 cut(s) 42, 406
HinP1I GCGC 2 cut(s) 42, 406
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 5 cut(s) 16, 71, 442, 701, 721
HpaII CCGG 2 cut(s) 45, 79
Hpy166II GTNNAC 4 cut(s) 97, 192, 766, 777
Hpy188I TCNGA 4 cut(s) 15, 21, 709, 893
Hpy188III TCNNGA 2 cut(s) 109, 737
Hpy8I GTNNAC 4 cut(s) 97, 192, 766, 777
Hpy99I CGWCG 2 cut(s) 71, 94
HpyAV CCTTC 2 cut(s) 115, 154
HpyCH4III ACNGT 3 cut(s) 564, 679, 750
HpyCH4IV ACGT 4 cut(s) 516, 588, 624, 805
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 378, 598, 913
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 4 cut(s) 516, 588, 624, 805
Hsp92II CATG 9 cut(s) 261, 365, 379, 605, 631, 670, 697, 911, 946
HspAI GCGC 2 cut(s) 42, 406
LmnI GCTCC 2 cut(s) 140, 859
Lsp1109I GCAGC 2 cut(s) 474, 477
LweI GCATC 4 cut(s) 381, 595, 765, 868
MaeI CTAG 2 cut(s) 446, 845
MaeII ACGT 4 cut(s) 516, 588, 624, 805
MaeIII GTNAC 3 cut(s) 307, 365, 394
MbiI CCGCTC 1 cut(s) 403
MboII GAAGA 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 5 cut(s) 181, 213, 568, 638, 712
MlyI GAGTC 3 cut(s) 80, 436, 695
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 2 cut(s) 179, 577
Mph1103I ATGCAT 1 cut(s) 603
MseI TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
MslI CAYNNNNRTG 4 cut(s) 692, 872, 921, 923
MspI CCGG 2 cut(s) 45, 79
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 4 cut(s) 193, 378, 598, 913
NcoI CCATGG 1 cut(s) 666
NlaIII CATG 9 cut(s) 261, 365, 379, 605, 631, 670, 697, 911, 946
NlaIV GGNNCC 2 cut(s) 64, 801
NmeAIII GCCGAG 1 cut(s) 883
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 603
OliI CACNNNNGTG 1 cut(s) 921
PacI TTAATTAA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 2 cut(s) 16, 721
PfoI TCCNGGA 1 cut(s) 137
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 3 cut(s) 405, 489, 492
PleI GAGTC 3 cut(s) 79, 436, 695
PpsI GAGTC 3 cut(s) 79, 436, 695
Ppu21I YACGTR 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 64, 801
PspPI GGNCC 2 cut(s) 62, 141
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PstNI CAGNNNCTG 2 cut(s) 398, 677
RsaI GTAC 4 cut(s) 77, 207, 468, 623
RsaNI GTAC 4 cut(s) 76, 206, 467, 622
RseI CAYNNNNRTG 4 cut(s) 692, 872, 921, 923
SaqAI TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
SatI GCNGC 3 cut(s) 404, 488, 491
Sau96I GGNCC 2 cut(s) 62, 141
SchI GAGTC 3 cut(s) 80, 436, 695
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 4 cut(s) 381, 595, 765, 868
SfcI CTRYAG 1 cut(s) 269
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 4 cut(s) 692, 872, 921, 923
Sse9I AATT 5 cut(s) 181, 213, 568, 638, 712
SsiI CCGC 4 cut(s) 129, 163, 403, 556
SspMI CTAG 2 cut(s) 446, 845
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 3 cut(s) 421, 643, 666
TaaI ACNGT 3 cut(s) 564, 679, 750
TaiI ACGT 4 cut(s) 519, 591, 627, 808
TaqI TCGA 3 cut(s) 176, 724, 736
TasI AATT 5 cut(s) 181, 213, 568, 638, 712
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 2 cut(s) 16, 721
Tru1I TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
Tru9I TTAA 6 cut(s) 6, 212, 216, 495, 566, 690
TscAI CASTG 2 cut(s) 194, 399
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 2 cut(s) 487, 490
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 6 cut(s) 112, 232, 246, 254, 562, 924
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 2 cut(s) 194, 399
VpaK11BI GGWCC 1 cut(s) 141
VspI ATTAAT 1 cut(s) 212
XapI RAATTY 2 cut(s) 568, 638
XspI CTAG 2 cut(s) 446, 845
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.