Rh2DG428400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014145
Physical Location & Seq
Reverse (-)
61966493 .. 61970385
3893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG428400.1

Sequence Viewer

Length: 927 bp
ATGACGGAAATGGAGAGCGCCGGAGAGTATCATATCGGCCCCGACGAGTCGTACCGGTCTCTGCCGTCGGTTTACTTGGCCTTCTTGACAATCTGGTTCATCTCCGCCTGCTCCTGGACCTTCAACACCTACAAAAACCGCCACCTGCAGTCGAATAATTTGCAGTGGACGCTCACATCTGTACCATTAATTAAAGCCTTGCAACTCACACTGTCTTTCCTCTTCTGGTATTCATGCTTTCATCTACAGATATGCTCTCTGTGGATGTCATTTGGGGTGTATGTAACTGGAGTGATATTTCAAACAGCTTCTTTTGTGTCCTTTTTACTCATATCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAGTGACTGAGCGGCGTACTACTGCTTCCCTTGGCTGTGTGTTTTACTTGACTCTAGTTGGATACAGAGCTTCTGTACCTTATTTTTCTGTCCTGCTGCTGCTTAACTATTTTATCTCATTCTACGTGATATTCCACCATATATCTCAAAATCTGTTAGTATTGCGGGAACAGTTAAATTTCATAGATAATGAGGACGTGCATGCAATGCATGATGCAGTCTATACAAAGTACGTCATGTTCAAAAAATTCCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATACATTAACATGGATGACTCATCAGAAAATTACTGGATTCGATTATTAGTTCGAGAGTGGGCACAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGACTCGGCACCACGTTTTTCAGTTATGCCAACTTTGAAATCTAAAGGGGAACTAGCTGTCGCTCCCATTTATAGCATTGAAATGGATGCTGAAACTTTCAGAGATTTTACTCGGCATGAATGGCACATTGGTGTGGTAAGCAATAGGAACATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

308

Amino Acids

36.03

Weight (kDa)

6.54

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 153
AasI GACNNNNNNGTC 1 cut(s) 760
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 775
AccBSI CCGCTC 1 cut(s) 379
AciI CCGC 4 cut(s) 105, 139, 379, 532
AcsI RAATTY 2 cut(s) 544, 614
AfaI GTAC 5 cut(s) 53, 183, 385, 444, 599
AfiI CCNNNNNNNGG 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 5 cut(s) 124, 302, 610, 805, 848
AjiI CACGTC 1 cut(s) 565
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AleI CACNNNNGTG 1 cut(s) 897
AluBI AGCT 3 cut(s) 308, 437, 824
AluI AGCT 3 cut(s) 308, 437, 824
Alw26I GTCTC 2 cut(s) 63, 644
AlwNI CAGNNNCTG 2 cut(s) 374, 653
AoxI GGCC 2 cut(s) 37, 78
ApeKI GCWGC 2 cut(s) 463, 466
ApoI RAATTY 2 cut(s) 544, 614
AseI ATTAAT 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 38, 117
AvaII GGWCC 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 724
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanI GGYRCC 1 cut(s) 775
BarI GAAGNNNNNNTAC 2 cut(s) 376, 408
BbvI GCAGC 2 cut(s) 450, 453
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 1 cut(s) 115
BciVI GTATCC 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 63, 644
BfaI CTAG 2 cut(s) 422, 821
BfmI CTRYAG 2 cut(s) 146, 245
BfoI RGCGCY 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 153
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 3 cut(s) 380, 464, 467
BlsI GCNGC 3 cut(s) 381, 465, 468
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 2 cut(s) 38, 117
BmiI GGNNCC 2 cut(s) 40, 777
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 4 cut(s) 357, 571, 741, 844
BpmI CTGGAG 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 493
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 397, 619, 642
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 2 cut(s) 292, 698
Bse3DI GCAATG 2 cut(s) 579, 633
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 397, 619, 642
BseGI GGATG 3 cut(s) 270, 679, 859
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 2 cut(s) 579, 633
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 292, 698
BseSI GKGCMC 1 cut(s) 724
BseXI GCAGC 2 cut(s) 450, 453
BshFI GGCC 2 cut(s) 39, 80
BshNI GGYRCC 1 cut(s) 775
BshTI ACCGGT 1 cut(s) 54
BsiSI CCGG 2 cut(s) 21, 55
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 63, 644
BsmFI GGGAC 1 cut(s) 782
BsnI GGCC 2 cut(s) 39, 80
Bso31I GGTCTC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 724
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 4 cut(s) 105, 139, 379, 532
BspANI GGCC 2 cut(s) 39, 80
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 40, 777
BspMAI CTGCAG 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 775
BspTNI GGTCTC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 2 cut(s) 579, 633
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 2 cut(s) 292, 698
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 397, 619, 642
BssT1I CCWWGG 3 cut(s) 397, 619, 642
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 4 cut(s) 213, 540, 655, 726
Bst6I CTCTTC 1 cut(s) 227
BstAPI GCANNNNNTGC 2 cut(s) 354, 574
BstBAI YACGTR 1 cut(s) 493
BstC8I GCNNGC 3 cut(s) 109, 359, 570
BstDEI CTNAG 1 cut(s) 375
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 3 cut(s) 270, 679, 859
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstMAI GTCTC 2 cut(s) 63, 644
BstMWI GCNNNNNNNGC 4 cut(s) 169, 354, 574, 889
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 2 cut(s) 146, 245
BstSLI GKGCMC 1 cut(s) 724
BstV1I GCAGC 2 cut(s) 450, 453
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 2 cut(s) 39, 80
BtgI CCRYGG 1 cut(s) 642
BtrI CACGTC 1 cut(s) 565
BtsCI GGATG 3 cut(s) 270, 679, 859
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 3 cut(s) 170, 209, 375
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 3 cut(s) 109, 359, 570
CaiI CAGNNNCTG 2 cut(s) 374, 653
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 38, 117
CseI GACGC 2 cut(s) 178, 350
Csp6I GTAC 5 cut(s) 52, 182, 384, 443, 598
CspAI ACCGGT 1 cut(s) 54
CviJI RGCY 8 cut(s) 39, 80, 197, 308, 402, 437, 641, 824
CviKI_1 RGCY 8 cut(s) 39, 80, 197, 308, 402, 437, 641, 824
CviQI GTAC 5 cut(s) 52, 182, 384, 443, 598
DdeI CTNAG 1 cut(s) 375
DrdI GACNNNNNNGTC 1 cut(s) 760
DseDI GACNNNNNNGTC 1 cut(s) 760
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 3 cut(s) 397, 619, 642
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 3 cut(s) 397, 619, 642
EcoT22I ATGCAT 1 cut(s) 579
ErhI CCWWGG 3 cut(s) 397, 619, 642
FaqI GGGAC 1 cut(s) 782
FauI CCCGC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 380, 464, 467
FokI GGATG 3 cut(s) 277, 686, 866
Fsp4HI GCNGC 3 cut(s) 380, 464, 467
FspBI CTAG 2 cut(s) 422, 821
GlaI GCGC 1 cut(s) 19
GluI GCNGC 3 cut(s) 380, 464, 467
GsuI CTGGAG 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 39, 80
HapII CCGG 2 cut(s) 21, 55
HgaI GACGC 2 cut(s) 178, 350
HhaI GCGC 1 cut(s) 20
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 5 cut(s) 47, 418, 677, 697, 770
HpaII CCGG 2 cut(s) 21, 55
Hpy166II GTNNAC 4 cut(s) 73, 168, 742, 753
Hpy188I TCNGA 2 cut(s) 685, 869
Hpy188III TCNNGA 2 cut(s) 85, 713
Hpy8I GTNNAC 4 cut(s) 73, 168, 742, 753
Hpy99I CGWCG 2 cut(s) 47, 70
HpyAV CCTTC 2 cut(s) 91, 130
HpyCH4III ACNGT 4 cut(s) 213, 540, 655, 726
HpyCH4IV ACGT 4 cut(s) 492, 564, 600, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 354, 574, 889
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 4 cut(s) 492, 564, 600, 781
HspAI GCGC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 116, 835
Lsp1109I GCAGC 2 cut(s) 450, 453
LweI GCATC 4 cut(s) 357, 571, 741, 844
MaeI CTAG 2 cut(s) 422, 821
MaeII ACGT 4 cut(s) 492, 564, 600, 781
MaeIII GTNAC 3 cut(s) 283, 341, 370
MbiI CCGCTC 1 cut(s) 379
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 5 cut(s) 157, 189, 544, 614, 688
MlyI GAGTC 4 cut(s) 56, 412, 671, 764
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 2 cut(s) 230, 553
Mph1103I ATGCAT 1 cut(s) 579
MseI TTAA 5 cut(s) 188, 192, 471, 542, 666
MslI CAYNNNNRTG 4 cut(s) 668, 848, 897, 899
MspI CCGG 2 cut(s) 21, 55
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 4 cut(s) 169, 354, 574, 889
NcoI CCATGG 1 cut(s) 642
NlaIV GGNNCC 2 cut(s) 40, 777
NmeAIII GCCGAG 2 cut(s) 752, 859
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 1 cut(s) 572
OliI CACNNNNGTG 1 cut(s) 897
PacI TTAATTAA 1 cut(s) 192
PaeI GCATGC 1 cut(s) 572
PaqCI CACCTGC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 3 cut(s) 381, 465, 468
PleI GAGTC 4 cut(s) 55, 412, 671, 764
PpsI GAGTC 4 cut(s) 55, 412, 671, 764
Ppu21I YACGTR 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 40, 777
PspPI GGNCC 2 cut(s) 38, 117
PsrI GAACNNNNNNTAC 2 cut(s) 590, 622
PstI CTGCAG 1 cut(s) 150
PstNI CAGNNNCTG 2 cut(s) 374, 653
RsaI GTAC 5 cut(s) 53, 183, 385, 444, 599
RsaNI GTAC 5 cut(s) 52, 182, 384, 443, 598
RseI CAYNNNNRTG 4 cut(s) 668, 848, 897, 899
SaqAI TTAA 5 cut(s) 188, 192, 471, 542, 666
SatI GCNGC 3 cut(s) 380, 464, 467
Sau96I GGNCC 2 cut(s) 38, 117
SchI GAGTC 4 cut(s) 56, 412, 671, 764
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 4 cut(s) 357, 571, 741, 844
SfcI CTRYAG 2 cut(s) 146, 245
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 4 cut(s) 668, 848, 897, 899
SphI GCATGC 1 cut(s) 572
Sse9I AATT 5 cut(s) 157, 189, 544, 614, 688
SsiI CCGC 4 cut(s) 105, 139, 379, 532
SspMI CTAG 2 cut(s) 422, 821
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 3 cut(s) 397, 619, 642
TaaI ACNGT 4 cut(s) 213, 540, 655, 726
TaiI ACGT 4 cut(s) 495, 567, 603, 784
TaqI TCGA 3 cut(s) 152, 700, 712
TasI AATT 5 cut(s) 157, 189, 544, 614, 688
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 5 cut(s) 188, 192, 471, 542, 666
Tru9I TTAA 5 cut(s) 188, 192, 471, 542, 666
TscAI CASTG 3 cut(s) 170, 216, 375
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 463, 466
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 5 cut(s) 88, 222, 230, 538, 900
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 3 cut(s) 170, 216, 375
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 1 cut(s) 188
XapI RAATTY 2 cut(s) 544, 614
XceI RCATGY 1 cut(s) 572
XspI CTAG 2 cut(s) 422, 821
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.