MD17G1187500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014145
Physical Location & Seq
Forward (+)
22410589 .. 22413605
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1187500.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGATTAAGCTTCCGGTTCGCAGAATGGCAGAATTGGAAAGCGTCGGAGCGTATCGTATAGGACTCAACGAGTCCTATCGGTCTCTGCCGTCGGTCTACTTAGCCTTCATGACAATCTGGTTCGTCTCCGCCTGCTCCTGGACCTTCAACACCTACAAAAACCGCCATCTCCAGACGAATAATTTGCAGTGGACGCTCGCTTCTGTTCCGCTGATTAAAGCCTTGCAACTTACGTTGTCTTTCCTCTTCTGGTATTCATGCTTTCATCTTCAAATATGCTCCCTGTGGATGTCATTTGGGATGTATGTAACTGGAGTGATATTTCAGACAGCTTCTTTTGTGTCTTTTTTACTCATCTCCCATGGTTACTGCATCATGTGTGAGCGCCTTTCAGTGACTGAGCGGCGTACTACTGCTTCCCTGGGCTGTGTCTTTTACTTGACTCTTGTCGGATACAAAGCTTCTGTACCTTATTTCTCTGTCTTGCTGCTGCTTAGCTATTTCATCTCGTTCTATGTGATATTTCACCATATTTCGCAAAATCTTTTAGTATTGCGCCACCAATTAAGCTTCATAGATGATGAAGATGTTCATGCAATGCATGATGCAGTCTATACAAAGTACACCATGTTCAAAAAGTTTCAAGGTGCAATGCAGATAGTAGCCGTGGCAGAGGCTGTGATATACATTAACACGGATGACTCATCCGAAAATTACTGGATTCGCTTGTTAATTCGAGAATGGGCACAGTTCTGCATCTTTGTTTACATTGGGTGGACTTTTAGGTCAAGGGACTTGGCACCACGGTTTTCCGTTATGCCAACATTGAAATCTAAACTAGTGGTGCCTCCCATTTATAGCATTGAAATGGATGCAGAAACTTTCAGAGATTTCACCAAGCATGAATGGCACATTGGAGTGCCAACTTCACCATCTTGCGAAGAAAGCGCTAAGGATTCTGTCTTGGTAATAATTCAGCATCCGCACGCATATAGAACAACTGCAGCCGGAAAATCTTCTCACATCCAAGACCAGAAGCCACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

349

Amino Acids

40.32

Weight (kDa)

8.53

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 784
AccB1I GGYRCC 2 cut(s) 799, 844
AccBSI CCGCTC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 96
AciI CCGC 5 cut(s) 129, 163, 209, 403, 983
AfaI GTAC 3 cut(s) 409, 468, 623
AfeI AGCGCT 1 cut(s) 949
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 6 cut(s) 148, 272, 634, 644, 829, 866
AhlI ACTAGT 1 cut(s) 838
AjnI CCWGG 2 cut(s) 137, 420
AjuI GAANNNNNNNTTGG 2 cut(s) 897, 929
AluBI AGCT 5 cut(s) 10, 332, 461, 498, 570
AluI AGCT 5 cut(s) 10, 332, 461, 498, 570
Alw26I GTCTC 2 cut(s) 87, 130
AlwNI CAGNNNCTG 2 cut(s) 398, 677
Aor51HI AGCGCT 1 cut(s) 949
ApeKI GCWGC 3 cut(s) 487, 490, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
Asp700I GAANNNNTTC 2 cut(s) 588, 1015
AspLEI GCGC 3 cut(s) 387, 558, 950
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 518, 886, 921
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 748
BanI GGYRCC 2 cut(s) 799, 844
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbvI GCAGC 3 cut(s) 474, 477, 1016
BccI CCATC 2 cut(s) 174, 940
BceAI ACGGC 2 cut(s) 73, 650
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 2 cut(s) 139, 422
BciVI GTATCC 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 87, 130
BcuI ACTAGT 1 cut(s) 838
BfaI CTAG 1 cut(s) 839
BfmI CTRYAG 2 cut(s) 1002, 1043
BfoI RGCGCY 2 cut(s) 388, 951
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 4 cut(s) 404, 488, 491, 1005
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 4 cut(s) 405, 489, 492, 1006
Bme1390I CCNGG 2 cut(s) 139, 422
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 801, 846
BmrFI CCNGG 2 cut(s) 139, 422
BmsI GCATC 5 cut(s) 381, 595, 765, 862, 988
BoxI GACNNNNGTC 1 cut(s) 446
BpmI CTGGAG 2 cut(s) 155, 333
Bpu10I CCTNAGC 1 cut(s) 951
Bpu1102I GCTNAGC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 361, 420, 421, 666, 803
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 316, 722
Bse3DI GCAATG 2 cut(s) 603, 657
BseBI CCWGG 2 cut(s) 139, 422
BseDI CCNNGG 5 cut(s) 361, 420, 421, 666, 803
BseGI GGATG 7 cut(s) 294, 306, 703, 704, 877, 979, 1023
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 2 cut(s) 603, 657
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 316, 722
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 3 cut(s) 474, 477, 1016
BshNI GGYRCC 2 cut(s) 799, 844
BsiSI CCGG 2 cut(s) 14, 1008
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 87, 130
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 806
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 748
Bsp1720I GCTNAGC 1 cut(s) 494
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 5 cut(s) 129, 163, 209, 403, 983
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 801, 846
BspMAI CTGCAG 1 cut(s) 1006
BspT107I GGYRCC 2 cut(s) 799, 844
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 403
BsrDI GCAATG 2 cut(s) 603, 657
BsrI ACTGG 2 cut(s) 316, 722
BssECI CCNNGG 5 cut(s) 361, 420, 421, 666, 803
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 139, 422
Bst4CI ACNGT 3 cut(s) 750, 807, 1044
Bst6I CTCTTC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 133, 198, 987
BstDEI CTNAG 4 cut(s) 100, 399, 494, 951
BstDSI CCRYGG 3 cut(s) 361, 666, 803
BstF5I GGATG 7 cut(s) 294, 306, 703, 704, 877, 979, 1023
BstH2I RGCGCY 2 cut(s) 388, 951
BstHHI GCGC 3 cut(s) 387, 558, 950
BstMAI GTCTC 2 cut(s) 87, 130
BstMWI GCNNNNNNNGC 3 cut(s) 193, 907, 945
BstNI CCWGG 2 cut(s) 139, 422
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 137, 420
BstSFI CTRYAG 2 cut(s) 1002, 1043
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 3 cut(s) 474, 477, 1016
BsuI GTATCC 1 cut(s) 446
BtgI CCRYGG 3 cut(s) 361, 666, 803
BtsCI GGATG 7 cut(s) 294, 306, 703, 704, 877, 979, 1023
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 3 cut(s) 194, 399, 1040
Cac8I GCNNGC 3 cut(s) 133, 198, 987
CaiI CAGNNNCTG 2 cut(s) 398, 677
CciI TCATGA 1 cut(s) 108
CfoI GCGC 3 cut(s) 387, 558, 950
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 2 cut(s) 31, 202
Csp6I GTAC 3 cut(s) 408, 467, 622
CviAII CATG 8 cut(s) 109, 258, 362, 376, 593, 602, 628, 902
CviQI GTAC 3 cut(s) 408, 467, 622
DdeI CTNAG 4 cut(s) 100, 399, 494, 951
DrdI GACNNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 141
Eco47III AGCGCT 1 cut(s) 949
EcoRII CCWGG 2 cut(s) 137, 420
EcoT14I CCWWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 8 cut(s) 112, 261, 365, 379, 596, 605, 631, 905
FaqI GGGAC 1 cut(s) 806
FatI CATG 8 cut(s) 108, 257, 361, 375, 592, 601, 627, 901
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 404, 488, 491, 1005
FokI GGATG 7 cut(s) 301, 313, 691, 710, 884, 966, 1010
Fsp4HI GCNGC 4 cut(s) 404, 488, 491, 1005
FspBI CTAG 1 cut(s) 839
GlaI GCGC 3 cut(s) 386, 557, 949
GluI GCNGC 4 cut(s) 404, 488, 491, 1005
GsuI CTGGAG 2 cut(s) 155, 333
HaeII RGCGCY 2 cut(s) 388, 951
HapII CCGG 2 cut(s) 14, 1008
HgaI GACGC 2 cut(s) 31, 202
HhaI GCGC 3 cut(s) 387, 558, 950
Hin1II CATG 8 cut(s) 112, 261, 365, 379, 596, 605, 631, 905
Hin6I GCGC 3 cut(s) 385, 556, 948
HinP1I GCGC 3 cut(s) 385, 556, 948
HindIII AAGCTT 3 cut(s) 8, 459, 568
HinfI GANTC 6 cut(s) 63, 71, 442, 701, 721, 956
HpaII CCGG 2 cut(s) 14, 1008
HphI GGTGA 3 cut(s) 518, 886, 921
Hpy166II GTNNAC 5 cut(s) 97, 192, 624, 766, 777
Hpy188I TCNGA 5 cut(s) 47, 327, 452, 709, 887
Hpy188III TCNNGA 3 cut(s) 109, 172, 737
Hpy8I GTNNAC 5 cut(s) 97, 192, 624, 766, 777
Hpy99I CGWCG 2 cut(s) 47, 94
HpyAV CCTTC 2 cut(s) 115, 154
HpyCH4III ACNGT 3 cut(s) 750, 807, 1044
HpyCH4IV ACGT 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 907, 945
HpyF3I CTNAG 4 cut(s) 100, 399, 494, 951
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 8 cut(s) 112, 261, 365, 379, 596, 605, 631, 905
HspAI GCGC 3 cut(s) 385, 556, 948
LmnI GCTCC 3 cut(s) 47, 140, 284
Lsp1109I GCAGC 3 cut(s) 474, 477, 1016
LweI GCATC 5 cut(s) 381, 595, 765, 862, 988
MaeI CTAG 1 cut(s) 839
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 3 cut(s) 307, 365, 394
MbiI CCGCTC 1 cut(s) 403
MboII GAAGA 5 cut(s) 238, 260, 596, 953, 1008
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 6 cut(s) 32, 181, 563, 712, 732, 972
MlyI GAGTC 4 cut(s) 57, 80, 436, 695
MmeI TCCRAC 2 cut(s) 25, 430
MnlI CCTC 3 cut(s) 254, 667, 858
Mph1103I ATGCAT 1 cut(s) 603
MroXI GAANNNNTTC 2 cut(s) 588, 1015
MseI TTAA 5 cut(s) 6, 216, 566, 690, 731
MslI CAYNNNNRTG 2 cut(s) 866, 917
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 14, 1008
MspR9I CCNGG 2 cut(s) 139, 422
MvaI CCWGG 2 cut(s) 139, 422
MwoI GCNNNNNNNGC 3 cut(s) 193, 907, 945
NcoI CCATGG 1 cut(s) 361
NlaIII CATG 8 cut(s) 112, 261, 365, 379, 596, 605, 631, 905
NlaIV GGNNCC 2 cut(s) 801, 846
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 603
PagI TCATGA 1 cut(s) 108
PasI CCCWGGG 1 cut(s) 421
PdmI GAANNNNTTC 2 cut(s) 588, 1015
PfeI GAWTC 2 cut(s) 721, 956
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 4 cut(s) 405, 489, 492, 1006
PleI GAGTC 4 cut(s) 57, 79, 436, 695
PpsI GAGTC 4 cut(s) 57, 79, 436, 695
PshAI GACNNNNGTC 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 137, 420
PspGI CCWGG 2 cut(s) 137, 420
PspN4I GGNNCC 2 cut(s) 801, 846
PspPI GGNCC 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PstI CTGCAG 1 cut(s) 1006
PstNI CAGNNNCTG 2 cut(s) 398, 677
RsaI GTAC 3 cut(s) 409, 468, 623
RsaNI GTAC 3 cut(s) 408, 467, 622
RseI CAYNNNNRTG 2 cut(s) 866, 917
SaqAI TTAA 5 cut(s) 6, 216, 566, 690, 731
SatI GCNGC 4 cut(s) 404, 488, 491, 1005
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 4 cut(s) 57, 80, 436, 695
ScrFI CCNGG 2 cut(s) 139, 422
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 5 cut(s) 381, 595, 765, 862, 988
SfcI CTRYAG 2 cut(s) 1002, 1043
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 2 cut(s) 866, 917
SpeI ACTAGT 1 cut(s) 838
Sse9I AATT 6 cut(s) 32, 181, 563, 712, 732, 972
SsiI CCGC 5 cut(s) 129, 163, 209, 403, 983
SspMI CTAG 1 cut(s) 839
StyD4I CCNGG 2 cut(s) 137, 420
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 750, 807, 1044
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 736
TaqII GACCGA 2 cut(s) 69, 82
TasI AATT 6 cut(s) 32, 181, 563, 712, 732, 972
TatI WGTACW 1 cut(s) 621
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 2 cut(s) 721, 956
Tru1I TTAA 5 cut(s) 6, 216, 566, 690, 731
Tru9I TTAA 5 cut(s) 6, 216, 566, 690, 731
TscAI CASTG 3 cut(s) 194, 399, 1047
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 487, 490, 1004
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 8 cut(s) 97, 246, 254, 493, 562, 581, 597, 918
TspGWI ACGGA 2 cut(s) 710, 802
TspRI CASTG 3 cut(s) 194, 399, 1047
VpaK11BI GGWCC 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 2 cut(s) 588, 1015
XspI CTAG 1 cut(s) 839
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.