Prupe.3G062900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014145
Physical Location & Seq
Forward (+)
4501401 .. 4505039
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G062900.1

Sequence Viewer

Length: 1050 bp
ATGATTAAGCTTCCGATTCGCAGAATGACCGAATTTGAGAGTATCGGAGCGTATCGTATCGGACTGGATGAGTCGTATCGGTCTCTGCCATCGGTTTACTTGGCCTTCTTGTCCATCTGGTTCGTCTCGGCCTGCTCTTGGACCATCAACACCTATAAGAACCGCCATCTCCAGACGAATAATTTGCAGTGGACGCTTGCATCTGTTCCATTAATTAAAGCCTTGCAACTTACGTTGTCGTTCCTCTTCTGGTATTCATGCTTTCATCTTCAAATATGCTCTCTATGGATGTCATTTGGAGTGTATGTAACAGGAGTGATTTTTCAGACAGCTTCTTTTGTGTCTTTTTTACTCATCGCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAGTAACTGAGCGGCGCACTACTGCTTCCCTTGGCTGTGTCTTTTACTTGACTCTTGTTGGATACAGAGCTTCTGTACCTTATTTCTCGGTGCTATTGCTGCTTAACTATTTCATTTCATTCTACGTGATATTCCACCACATATCCCAGAATCTGTTAGTGTTGCGTGAACAATTAAGTTTTATAGATAATGAGGATGTTCATGCAATGCATGATGCAGTCTATACGAAGTACATCATGTTCAAAAAATTCCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATACATTAACATGGATGACTCATCAGAAAATTATTGGATTCGCTTGCTAGTCCGAGAATGGGCCCAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGACTTGGCACCGCGATTCTCTGTTATGCCAACTTTAAAATCTAAAGGAGAACTAGTGGTGCCTCCAATTTATAGCATTGAAATGGACGCAGAAACTTTCAGAGATTTCACGAAGCATGAATGGCACATTGGAGTGCCAACTACACCTTCCTGTGATGAAAGCTCCATGGATTCTGTCTTGGTAATAATTCAGCATCCACATGCATATAGGCCAACCGCAGCCGGAAAATCTTGTCAAAGCCGAGGGCAGCCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

350

Amino Acids

40.44

Weight (kDa)

8.03

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52155
fragaria_vesca FvH4_6g32020
malus_domestica MD09G1206800.v1.1 MD17G1187500.v1.1
prunus_persica Prupe.3G062900_v2.0.a1 Prupe.3G062900_v2.0.a1
pyrus_communis pycom09g12320 pycom17g19650
rosa_chinensis RchiOBHm_Chr2g0139631
rosa_laevigata RLG00000019823
rosa_multiflora Rmu_sc0009449.1_g000005
rosa_roxburghii Rroxscaffold_2G00105330
rosa_rugosa Rorug02G0358800
rosa_samantha Rh2AG408800 Rh2CG394700 Rh2DG428400
rosa_wichuraiana Rw2G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 784
AccB1I GGYRCC 2 cut(s) 799, 850
AccBSI CCGCTC 1 cut(s) 403
AccII CGCG 1 cut(s) 805
AciI CCGC 4 cut(s) 163, 403, 803, 1008
AcsI RAATTY 2 cut(s) 32, 638
AfaI GTAC 2 cut(s) 468, 623
AfiI CCNNNNNNNGG 2 cut(s) 138, 742
AgsI TTSAA 3 cut(s) 272, 634, 872
AhlI ACTAGT 1 cut(s) 844
AjuI GAANNNNNNNTTGG 4 cut(s) 903, 922, 935, 954
AluBI AGCT 4 cut(s) 10, 332, 461, 954
AluI AGCT 4 cut(s) 10, 332, 461, 954
Alw26I GTCTC 3 cut(s) 87, 130, 668
AlwNI CAGNNNCTG 3 cut(s) 398, 544, 677
AoxI GGCC 4 cut(s) 102, 129, 744, 1001
ApaI GGGCCC 1 cut(s) 748
ApeKI GCWGC 3 cut(s) 490, 1010, 1039
ApoI RAATTY 2 cut(s) 32, 638
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AseI ATTAAT 1 cut(s) 212
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 141, 744, 745
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 748
BanI GGYRCC 2 cut(s) 799, 850
BanII GRGCYC 1 cut(s) 748
BbvI GCAGC 2 cut(s) 477, 1022
BccI CCATC 4 cut(s) 97, 122, 152, 174
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciVI GTATCC 1 cut(s) 446
BcoDI GTCTC 3 cut(s) 87, 130, 668
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 2 cut(s) 731, 845
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 4 cut(s) 404, 491, 1011, 1040
BlsI GCNGC 4 cut(s) 405, 492, 1012, 1041
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 141, 744, 745
BmiI GGNNCC 3 cut(s) 746, 801, 852
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 5 cut(s) 209, 381, 595, 765, 994
BmuI ACTGGG 1 cut(s) 742
BpmI CTGGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 5 cut(s) 421, 643, 666, 957, 1033
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 831, 861
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 742
Bse1I ACTGG 3 cut(s) 69, 748, 1043
Bse3DI GCAATG 2 cut(s) 603, 657
BseDI CCNNGG 5 cut(s) 421, 643, 666, 957, 1033
BseGI GGATG 5 cut(s) 73, 294, 592, 703, 985
BseLI CCNNNNNNNGG 2 cut(s) 138, 742
BseMI GCAATG 2 cut(s) 603, 657
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 3 cut(s) 69, 748, 1043
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 2 cut(s) 477, 1022
Bsh1236I CGCG 1 cut(s) 805
BshFI GGCC 4 cut(s) 104, 131, 746, 1003
BshNI GGYRCC 2 cut(s) 799, 850
BsiSI CCGG 1 cut(s) 1014
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 2 cut(s) 138, 742
BsmAI GTCTC 3 cut(s) 87, 130, 668
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 4 cut(s) 104, 131, 746, 1003
Bso31I GGTCTC 1 cut(s) 87
Bsp120I GGGCCC 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 748
Bsp19I CCATGG 2 cut(s) 666, 957
BspACI CCGC 4 cut(s) 163, 403, 803, 1008
BspANI GGCC 4 cut(s) 104, 131, 746, 1003
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 1 cut(s) 805
BspLI GGNNCC 3 cut(s) 746, 801, 852
BspT107I GGYRCC 2 cut(s) 799, 850
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 403
BsrDI GCAATG 2 cut(s) 603, 657
BsrI ACTGG 3 cut(s) 69, 748, 1043
BssECI CCNNGG 5 cut(s) 421, 643, 666, 957, 1033
BssT1I CCWWGG 4 cut(s) 421, 643, 666, 957
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 4 cut(s) 133, 198, 383, 728
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 2 cut(s) 666, 957
BstF5I GGATG 5 cut(s) 73, 294, 592, 703, 985
BstFNI CGCG 1 cut(s) 805
BstHHI GCGC 1 cut(s) 408
BstMAI GTCTC 3 cut(s) 87, 130, 668
BstMWI GCNNNNNNNGC 4 cut(s) 193, 378, 490, 913
BstNSI RCATGY 1 cut(s) 995
BstSLI GKGCMC 1 cut(s) 748
BstUI CGCG 1 cut(s) 805
BstV1I GCAGC 2 cut(s) 477, 1022
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 4 cut(s) 104, 131, 746, 1003
BtgI CCRYGG 2 cut(s) 666, 957
BtgZI GCGATG 1 cut(s) 340
BtsCI GGATG 5 cut(s) 73, 294, 592, 703, 985
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 194, 1050
Cac8I GCNNGC 4 cut(s) 133, 198, 383, 728
CaiI CAGNNNCTG 3 cut(s) 398, 544, 677
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 3 cut(s) 141, 744, 745
CseI GACGC 3 cut(s) 202, 374, 887
Csp6I GTAC 2 cut(s) 467, 622
CviQI GTAC 2 cut(s) 467, 622
DdeI CTNAG 1 cut(s) 399
DraI TTTAAA 1 cut(s) 828
DrdI GACNNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco130I CCWWGG 4 cut(s) 421, 643, 666, 957
Eco24I GRGCYC 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 141
EcoT14I CCWWGG 4 cut(s) 421, 643, 666, 957
EcoT22I ATGCAT 2 cut(s) 603, 997
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 4 cut(s) 421, 643, 666, 957
Esp3I CGTCTC 1 cut(s) 130
FaqI GGGAC 1 cut(s) 806
Fnu4HI GCNGC 4 cut(s) 404, 491, 1011, 1040
FokI GGATG 5 cut(s) 80, 301, 599, 710, 972
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 4 cut(s) 404, 491, 1011, 1040
FspBI CTAG 2 cut(s) 731, 845
GlaI GCGC 1 cut(s) 407
GluI GCNGC 4 cut(s) 404, 491, 1011, 1040
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 4 cut(s) 104, 131, 746, 1003
HapII CCGG 1 cut(s) 1014
HgaI GACGC 3 cut(s) 202, 374, 887
HhaI GCGC 1 cut(s) 408
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 8 cut(s) 16, 71, 442, 541, 701, 721, 807, 962
HpaII CCGG 1 cut(s) 1014
Hpy166II GTNNAC 5 cut(s) 97, 192, 560, 766, 777
Hpy188I TCNGA 7 cut(s) 15, 47, 62, 327, 709, 737, 893
Hpy188III TCNNGA 2 cut(s) 172, 901
Hpy8I GTNNAC 5 cut(s) 97, 192, 560, 766, 777
HpyAV CCTTC 2 cut(s) 115, 948
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4IV ACGT 2 cut(s) 233, 516
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 378, 490, 913
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 233, 516
HspAI GCGC 1 cut(s) 406
LmnI GCTCC 2 cut(s) 47, 959
Lsp1109I GCAGC 2 cut(s) 477, 1022
LweI GCATC 5 cut(s) 209, 381, 595, 765, 994
MaeI CTAG 2 cut(s) 731, 845
MaeII ACGT 2 cut(s) 233, 516
MaeIII GTNAC 3 cut(s) 307, 365, 394
MbiI CCGCTC 1 cut(s) 403
MboII GAAGA 2 cut(s) 238, 260
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 8 cut(s) 32, 181, 213, 563, 638, 712, 858, 978
MlyI GAGTC 3 cut(s) 80, 436, 695
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 4 cut(s) 254, 577, 864, 1028
Mph1103I ATGCAT 2 cut(s) 603, 997
MseI TTAA 7 cut(s) 6, 212, 216, 495, 566, 690, 827
MslI CAYNNNNRTG 4 cut(s) 692, 872, 923, 990
MspI CCGG 1 cut(s) 1014
MvnI CGCG 1 cut(s) 805
MwoI GCNNNNNNNGC 4 cut(s) 193, 378, 490, 913
NcoI CCATGG 2 cut(s) 666, 957
NlaIV GGNNCC 3 cut(s) 746, 801, 852
NmeAIII GCCGAG 1 cut(s) 107
NsiI ATGCAT 2 cut(s) 603, 997
NspI RCATGY 1 cut(s) 995
PacI TTAATTAA 1 cut(s) 216
PfeI GAWTC 5 cut(s) 16, 541, 721, 807, 962
PkrI GCNGC 4 cut(s) 405, 492, 1012, 1041
PleI GAGTC 3 cut(s) 79, 436, 695
PpsI GAGTC 3 cut(s) 79, 436, 695
Ppu21I YACGTR 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 746, 801, 852
PspOMI GGGCCC 1 cut(s) 744
PspPI GGNCC 3 cut(s) 141, 744, 745
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PstNI CAGNNNCTG 3 cut(s) 398, 544, 677
RsaI GTAC 2 cut(s) 468, 623
RsaNI GTAC 2 cut(s) 467, 622
RseI CAYNNNNRTG 4 cut(s) 692, 872, 923, 990
SaqAI TTAA 7 cut(s) 6, 212, 216, 495, 566, 690, 827
SatI GCNGC 4 cut(s) 404, 491, 1011, 1040
Sau96I GGNCC 3 cut(s) 141, 744, 745
SchI GAGTC 3 cut(s) 80, 436, 695
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 5 cut(s) 209, 381, 595, 765, 994
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 4 cut(s) 692, 872, 923, 990
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 8 cut(s) 32, 181, 213, 563, 638, 712, 858, 978
SsiI CCGC 4 cut(s) 163, 403, 803, 1008
SspMI CTAG 2 cut(s) 731, 845
StyI CCWWGG 4 cut(s) 421, 643, 666, 957
TaaI ACNGT 1 cut(s) 679
TaiI ACGT 2 cut(s) 236, 519
TaqII GACCGA 2 cut(s) 44, 69
TasI AATT 8 cut(s) 32, 181, 213, 563, 638, 712, 858, 978
TatI WGTACW 1 cut(s) 621
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 5 cut(s) 16, 541, 721, 807, 962
Tru1I TTAA 7 cut(s) 6, 212, 216, 495, 566, 690, 827
Tru9I TTAA 7 cut(s) 6, 212, 216, 495, 566, 690, 827
TscAI CASTG 2 cut(s) 194, 1050
TseI GCWGC 3 cut(s) 490, 1010, 1039
TspDTI ATGAA 7 cut(s) 246, 254, 493, 498, 581, 924, 963
TspRI CASTG 2 cut(s) 194, 1050
VpaK11BI GGWCC 1 cut(s) 141
VspI ATTAAT 1 cut(s) 212
XapI RAATTY 2 cut(s) 32, 638
XceI RCATGY 1 cut(s) 995
XspI CTAG 2 cut(s) 731, 845
Zsp2I ATGCAT 2 cut(s) 603, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.