FvH4_6g34420

Proton-conducting membrane transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017099
Physical Location & Seq
Forward (+)
27174953 .. 27176489
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34420.t1

Sequence Viewer

Length: 591 bp
ATGTATCTACTTATTGTATTTTTGCCCCTTCTCGGTAGTTCCGTAGCAGGTTTTTTCGGACGTTTTCTAGGATCAGAAGGAAGCGCTATAATGACCACTACGTGCGTTTCATTCTCTTTGATCTTATCTCTGATTGCTTTTTATGAAGTCGCACCGGGAGCTAGTGCTTGCTATCTAAGAATTGCTCCATGGATCTCATCGGAAATCCCGACCGTAGTGATGTTAATTGTGGTTACATCCATAAGTAGCTTGGTTCATCTTTATTCCATATCATATATGTCCGAGGATCCGCATAGCCCTCGATTTATGTGTTATTTATCAATTCTTACTTTTTTTATGCCAATGTTGGTGACTGGAGATAACTCTCTTCAATTATTCCTGGGATGGGAGGGAGTAGGTCTTGCTTCATATTTGTTAATTCATTTCTGGTTTACAAGACTTCAGGCAGATAAAGCAGCTACAAAAGCTATGCCTGTCAATCGAGTAGGTGATTTTGGATTAGCTCCTGGGATTTCGGGCCGTTTTACTCTCTTTCAAACAGTAGACTTTTCAACCATTTTTGCTTGTGCTAGTGCCCCCAGAAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012
Pfam Domains
Protein Families
Proton_antipo_M Proton_antipo_N

Protein Analysis

197

Amino Acids

21.4

Weight (kDa)

6.25

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_N PF00662 71 - 103 1.3e-12 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
Proton_antipo_M PF00361 121 - 189 4.4e-11 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017099)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00513
fragaria_vesca FvH4_6g34420 FvH4_c1g00470
malus_domestica MD13G1126900.v1.1
pyrus_communis pycom12401g00270 pycom17g12740
rosa_chinensis RchiOBHm_MTg0498221
rosa_laevigata RLG00000000086 RLG00000000118 RLG00000000360 RLG00000000372 RLG00000000388
rosa_wichuraiana Rw0G023320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 543
AciI CCGC 1 cut(s) 290
AclWI GGATC 4 cut(s) 79, 200, 281, 294
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 1 cut(s) 425
AdeI CACNNNGTG 1 cut(s) 102
AfeI AGCGCT 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 32, 385
AgsI TTSAA 3 cut(s) 371, 536, 552
AjnI CCWGG 2 cut(s) 378, 505
AluBI AGCT 5 cut(s) 161, 249, 458, 467, 503
AluI AGCT 5 cut(s) 161, 249, 458, 467, 503
AlwI GGATC 4 cut(s) 79, 200, 281, 294
Aor51HI AGCGCT 1 cut(s) 85
AoxI GGCC 1 cut(s) 517
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 361, 500
BaeGI GKGCMC 1 cut(s) 577
BamHI GGATCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 467
BccI CCATC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 504
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 2 cut(s) 380, 507
BcnI CCSGG 1 cut(s) 156
BfaI CTAG 3 cut(s) 68, 162, 570
BfoI RGCGCY 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 3 cut(s) 156, 380, 507
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 3 cut(s) 156, 380, 507
BpmI CTGGAG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 188, 282, 379, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 385
Bse1I ACTGG 1 cut(s) 358
BseBI CCWGG 2 cut(s) 380, 507
BseDI CCNNGG 4 cut(s) 188, 282, 379, 506
BseGI GGATG 2 cut(s) 236, 389
BseLI CCNNNNNNNGG 2 cut(s) 32, 385
BseNI ACTGG 1 cut(s) 358
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 32, 385
BsnI GGCC 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 4 cut(s) 71, 120, 192, 286
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 4 cut(s) 79, 200, 281, 294
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 4 cut(s) 188, 282, 379, 506
BssMI GATC 4 cut(s) 71, 120, 192, 286
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 380, 507
Bst4CI ACNGT 2 cut(s) 214, 541
Bst6I CTCTTC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 176, 588
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 236, 389
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 4 cut(s) 74, 123, 195, 289
BstMBI GATC 4 cut(s) 71, 120, 192, 286
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 3 cut(s) 158, 452, 464
BstNI CCWGG 2 cut(s) 380, 507
BstSCI CCNGG 3 cut(s) 154, 378, 505
BstSLI GKGCMC 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 192, 286
BstYI RGATCY 2 cut(s) 192, 286
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 2 cut(s) 236, 389
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 517
CviAII CATG 1 cut(s) 189
CviJI RGCY 7 cut(s) 161, 249, 297, 458, 467, 503, 519
CviKI_1 RGCY 7 cut(s) 161, 249, 297, 458, 467, 503, 519
DdeI CTNAG 2 cut(s) 176, 588
DpnI GATC 4 cut(s) 73, 122, 194, 288
DpnII GATC 4 cut(s) 71, 120, 192, 286
DraIII CACNNNGTG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 378, 505
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 1 cut(s) 192
FatI CATG 1 cut(s) 188
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 223, 396
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 3 cut(s) 68, 162, 570
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 1 cut(s) 519
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HpaII CCGG 1 cut(s) 155
HphI GGTGA 2 cut(s) 361, 500
Hpy166II GTNNAC 2 cut(s) 432, 544
Hpy188I TCNGA 5 cut(s) 59, 76, 132, 202, 283
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 432, 544
HpyAV CCTTC 2 cut(s) 38, 71
HpyCH4III ACNGT 2 cut(s) 214, 541
HpyCH4IV ACGT 2 cut(s) 61, 101
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 452, 464
HpyF3I CTNAG 2 cut(s) 176, 588
HpySE526I ACGT 2 cut(s) 61, 101
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 4 cut(s) 71, 120, 192, 286
LmnI GCTCC 3 cut(s) 158, 190, 508
Lsp1109I GCAGC 1 cut(s) 467
MaeI CTAG 3 cut(s) 68, 162, 570
MaeII ACGT 2 cut(s) 61, 101
MaeIII GTNAC 2 cut(s) 232, 349
MalI GATC 4 cut(s) 73, 122, 194, 288
MboI GATC 4 cut(s) 71, 120, 192, 286
MboII GAAGA 1 cut(s) 359
MflI RGATCY 2 cut(s) 192, 286
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 6 cut(s) 180, 225, 321, 371, 417, 583
MnlI CCTC 3 cut(s) 277, 309, 382
MseI TTAA 2 cut(s) 224, 416
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 3 cut(s) 156, 380, 507
MvaI CCWGG 2 cut(s) 380, 507
MwoI GCNNNNNNNGC 3 cut(s) 158, 452, 464
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 188
NdeII GATC 4 cut(s) 71, 120, 192, 286
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 349
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 206
PkrI GCNGC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 378, 505
PspGI CCWGG 2 cut(s) 378, 505
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 517
PsuI RGATCY 2 cut(s) 192, 286
SaqAI TTAA 2 cut(s) 224, 416
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 4 cut(s) 71, 120, 192, 286
Sau96I GGNCC 1 cut(s) 517
ScrFI CCNGG 3 cut(s) 156, 380, 507
SduI GDGCHC 1 cut(s) 577
Sse9I AATT 6 cut(s) 180, 225, 321, 371, 417, 583
SsiI CCGC 1 cut(s) 290
SspMI CTAG 3 cut(s) 68, 162, 570
StyD4I CCNGG 3 cut(s) 154, 378, 505
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 214, 541
TaiI ACGT 2 cut(s) 64, 104
TaqI TCGA 2 cut(s) 301, 481
TasI AATT 6 cut(s) 180, 225, 321, 371, 417, 583
Tru1I TTAA 2 cut(s) 224, 416
Tru9I TTAA 2 cut(s) 224, 416
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 5 cut(s) 99, 159, 245, 396, 410
TspGWI ACGGA 1 cut(s) 31
XapI RAATTY 1 cut(s) 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 3 cut(s) 68, 162, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.