Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Forward (+)

27772621 .. 27773941

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCCGAGAGATCCAACTTTGCGCAGACATGCAACCTCCTCAGCCAGTACTTGAAGGAGAAGAGAAGCCAGTACCTCCAGGGCGACAGCTTCGGAGTCAAGCCGGTTCCCCCGGCCACCATGAACTTGCTCAACGCCATGGAGGCCAGCCCGGCACCACCGGCTGCCAATCCGGATCAGCCTAGATCTGCTCCCATGACTATCTTTTACGGCGGCCAGGTGCTCGTCTTCAGCGACCTTTCGCCGGAGAAGGCCAAGGAGATCATGGGGTTGGCTACCCAAGGAAGCCCTGTTGTTTCTTCAAGTGAGTCTAATGTTGTGGTGAAACCACAGCAAGTGAAACCACAGCAGCAACAACTGCAACCGCCTCCGGCTATTGCCTCGGATTTGCCTATTATGAGAAGGGCTTCGCTTCATAAGTTTTTGGCCAAGAGAAAAGAGAGAGTTGTTGCGGTAGCTCCATACCAAGTGAACCACAGCCAGCAGAGAGCGACGTCTCCCAAGGCGGAGGAACAAGTAGCAGGGCAAAGTTCAAAGCAGCTTGAACTCAGGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

186

Amino Acids

20.2

Weight (kDa)

9.67

Isoelectric Point (pI)

76.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	60 - 92	9.1e-16	tify domain
Jas_motif	PF09425	131 - 156	3.5e-10	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	497
Acc16I	TGCGCA	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	4 cut(s)	213, 365, 452, 506
AclWI	GGATC	2 cut(s)	6, 183
AcoI	YGGCCR	4 cut(s)	3, 114, 214, 426
AcuI	CTGAAG	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	2 cut(s)	50, 74
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	55, 303, 534, 545
AjnI	CCWGG	2 cut(s)	78, 216
AluBI	AGCT	3 cut(s)	90, 458, 541
AluI	AGCT	3 cut(s)	90, 458, 541
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	6, 183
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	6 cut(s)	3, 114, 144, 214, 252, 426
ApeKI	GCWGC	3 cut(s)	164, 349, 538
Asp700I	GAANNNNTTC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	25
AsuC2I	CCSGG	2 cut(s)	113, 152
AsuHPI	GGTGA	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	151, 361, 550
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	2 cut(s)	80, 218
BcnI	CCSGG	2 cut(s)	113, 152
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	554
BglI	GCCNNNNNGGC	2 cut(s)	143, 152
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	4 cut(s)	165, 214, 350, 539
BlsI	GCNGC	4 cut(s)	166, 215, 351, 540
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	80, 113, 152, 218
BmiI	GGNNCC	2 cut(s)	108, 156
BmrFI	CCNGG	4 cut(s)	80, 113, 152, 218
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	113, 152
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	7 cut(s)	79, 111, 138, 255, 280, 381, 501
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	2 cut(s)	103, 160
Bse1I	ACTGG	2 cut(s)	46, 70
BseAI	TCCGGA	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	80, 218
BseDI	CCNNGG	7 cut(s)	79, 111, 138, 255, 280, 381, 501
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	2 cut(s)	46, 70
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	151, 361, 550
BshFI	GGCC	6 cut(s)	5, 116, 146, 216, 254, 428
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	7 cut(s)	104, 113, 152, 161, 173, 245, 371
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	501
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	6 cut(s)	5, 116, 146, 216, 254, 428
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	11, 175, 185, 261
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	4 cut(s)	213, 365, 452, 506
BspANI	GGCC	6 cut(s)	5, 116, 146, 216, 254, 428
BspCNI	CTCAG	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	108, 156
BspPI	GGATC	2 cut(s)	6, 183
BspT107I	GGYRCC	1 cut(s)	154
BsrFI	RCCGGY	2 cut(s)	103, 160
BsrI	ACTGG	2 cut(s)	46, 70
BssAI	RCCGGY	2 cut(s)	103, 160
BssECI	CCNNGG	7 cut(s)	79, 111, 138, 255, 280, 381, 501
BssMI	GATC	4 cut(s)	11, 175, 185, 261
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	4 cut(s)	138, 255, 280, 501
Bst2UI	CCWGG	2 cut(s)	80, 218
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	148, 482
BstDEI	CTNAG	2 cut(s)	41, 548
BstDSI	CCRYGG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	14, 178, 188, 264
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	4 cut(s)	11, 175, 185, 261
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 152, 161, 358
BstNI	CCWGG	2 cut(s)	80, 218
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	4 cut(s)	78, 111, 150, 216
BstSFI	CTRYAG	1 cut(s)	554
BstV1I	GCAGC	3 cut(s)	151, 361, 550
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	11, 185
BstYI	RGATCY	2 cut(s)	11, 185
BsuRI	GGCC	6 cut(s)	5, 116, 146, 216, 254, 428
BtgI	CCRYGG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	148, 482
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	103, 160
Csp6I	GTAC	2 cut(s)	49, 73
CviAII	CATG	5 cut(s)	30, 121, 139, 196, 265
CviQI	GTAC	2 cut(s)	49, 73
DdeI	CTNAG	2 cut(s)	41, 548
DpnI	GATC	4 cut(s)	13, 177, 187, 263
DpnII	GATC	4 cut(s)	11, 175, 185, 261
EaeI	YGGCCR	4 cut(s)	3, 114, 214, 426
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	4 cut(s)	138, 255, 280, 501
Eco57I	CTGAAG	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	78, 216
EcoT14I	CCWWGG	4 cut(s)	138, 255, 280, 501
ErhI	CCWWGG	4 cut(s)	138, 255, 280, 501
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	5 cut(s)	33, 124, 142, 199, 268
FaiI	YATR	9 cut(s)	31, 122, 140, 197, 266, 398, 417, 463, 556
FatI	CATG	5 cut(s)	29, 120, 138, 195, 264
Fnu4HI	GCNGC	4 cut(s)	165, 214, 350, 539
Fsp4HI	GCNGC	4 cut(s)	165, 214, 350, 539
FspBI	CTAG	1 cut(s)	183
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	4 cut(s)	165, 214, 350, 539
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	6 cut(s)	5, 116, 146, 216, 254, 428
HapII	CCGG	7 cut(s)	104, 113, 152, 161, 173, 245, 371
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	33, 124, 142, 199, 268
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	96, 308
HpaII	CCGG	7 cut(s)	104, 113, 152, 161, 173, 245, 371
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	95, 385
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	3 cut(s)	49, 244, 396
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	2 cut(s)	33, 361
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 152, 161, 358
HpyF3I	CTNAG	2 cut(s)	41, 548
HpySE526I	ACGT	1 cut(s)	494
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	33, 124, 142, 199, 268
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	11, 175, 185, 261
LmnI	GCTCC	2 cut(s)	196, 463
Lsp1109I	GCAGC	3 cut(s)	151, 361, 550
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	494
MalI	GATC	4 cut(s)	13, 177, 187, 263
MboI	GATC	4 cut(s)	11, 175, 185, 261
MboII	GAAGA	3 cut(s)	73, 220, 291
MflI	RGATCY	2 cut(s)	11, 185
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	428
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	2 cut(s)	105, 317
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	7 cut(s)	47, 50, 86, 136, 378, 391, 502
Mox20I	TGGCCA	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	7 cut(s)	104, 113, 152, 161, 173, 245, 371
MspR9I	CCNGG	4 cut(s)	80, 113, 152, 218
MvaI	CCWGG	2 cut(s)	80, 218
MwoI	GCNNNNNNNGC	4 cut(s)	143, 152, 161, 358
NciI	CCSGG	2 cut(s)	113, 152
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	11, 175, 185, 261
NlaIII	CATG	5 cut(s)	33, 124, 142, 199, 268
NlaIV	GGNNCC	2 cut(s)	108, 156
NmeAIII	GCCGAG	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	24
NspI	RCATGY	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	166, 215, 351, 540
PleI	GAGTC	2 cut(s)	104, 316
PpsI	GAGTC	2 cut(s)	104, 316
Psp6I	CCWGG	2 cut(s)	78, 216
PspGI	CCWGG	2 cut(s)	78, 216
PspN4I	GGNNCC	2 cut(s)	108, 156
PsuI	RGATCY	2 cut(s)	11, 185
RsaI	GTAC	2 cut(s)	50, 74
RsaNI	GTAC	2 cut(s)	49, 73
SatI	GCNGC	4 cut(s)	165, 214, 350, 539
Sau3AI	GATC	4 cut(s)	11, 175, 185, 261
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	2 cut(s)	105, 317
ScrFI	CCNGG	4 cut(s)	80, 113, 152, 218
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	8 cut(s)	39, 78, 92, 222, 240, 460, 497, 543
SfcI	CTRYAG	1 cut(s)	554
SsiI	CCGC	4 cut(s)	213, 365, 452, 506
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	78, 111, 150, 216
StyI	CCWWGG	4 cut(s)	138, 255, 280, 501
TaiI	ACGT	1 cut(s)	497
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	216
TseI	GCWGC	3 cut(s)	164, 349, 538
TspDTI	ATGAA	2 cut(s)	137, 404
XceI	RCATGY	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	1 cut(s)	183
ZraI	GACGTC	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.