Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Forward (+)

60601162 .. 60601811

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCGAGAGATCCAACTTTGCGCAGACCTGCAACCTCCTCAGCCAGTACTTGAAGGAGAAGAGAAGCCAGTACCTGCAGGGAGATAGCTTCGGAGTGAAGCCAGCCCCGGCGACCATGAACTTGCTCAACACCATGGAGGCCGGCCCTCCAGCGGCGGCGAGTACTCCAATCTGCTCCCATGACCATCTTCTACGGCGGCAGGTCCTGGTTTTCAACGACGTTTCGGCTGAGAAGGCAAAGGAAATTATGGGATTGGCTACCAAAGGAAGCGCTGTGGTTTCCTCTACTGAATCGAATGTTGTAGTCAAACAACAACAACCACCACCTCAGGCTGTTGGGTCGGATTTGCCTATTGCAAGAAGGGCTTCGCTTCACAAGTTTCTGGCCAAGAGGAAAGAGAGAGTGACTGCAGTAGCTCCATACCAACTGAACCACATCCAGAGAGCAGCTTCTCCCAAGGCAGAGGAACGAGTTGGAGCGCAAAGTTCAAAGCAGCTTGAACTCAGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

171

Amino Acids

18.58

Weight (kDa)

9.73

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	68 - 87	6.9e-07	tify domain
Jas_motif	PF09425	118 - 143	4.8e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	3 cut(s)	38, 84, 193
AciI	CCGC	3 cut(s)	155, 158, 199
AclWI	GGATC	1 cut(s)	6
AcoI	YGGCCR	2 cut(s)	3, 387
AfaI	GTAC	3 cut(s)	50, 74, 166
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	4 cut(s)	55, 217, 492, 503
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	4 cut(s)	90, 419, 452, 499
AluI	AGCT	4 cut(s)	90, 419, 452, 499
AlwI	GGATC	1 cut(s)	6
AlwNI	CAGNNNCTG	2 cut(s)	76, 208
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	4 cut(s)	3, 141, 145, 387
ApeKI	GCWGC	2 cut(s)	449, 496
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	3 cut(s)	25, 275, 484
AspS9I	GGNCC	2 cut(s)	146, 205
AsuC2I	CCSGG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	461, 508
BccI	CCATC	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	110
BfmI	CTRYAG	3 cut(s)	77, 411, 512
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	3 cut(s)	38, 84, 193
BisI	GCNGC	5 cut(s)	156, 159, 200, 450, 497
BlsI	GCNGC	5 cut(s)	157, 160, 201, 451, 498
BmcAI	AGTACT	2 cut(s)	50, 166
Bme1390I	CCNGG	2 cut(s)	110, 209
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	146, 205
BmrFI	CCNGG	2 cut(s)	110, 209
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	108, 135, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	46, 70
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	108, 135, 459
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	55, 222, 344
BseNI	ACTGG	2 cut(s)	46, 70
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	461, 508
BshFI	GGCC	4 cut(s)	5, 143, 147, 389
BsiSI	CCGG	2 cut(s)	110, 144
BslI	CCNNNNNNNGG	1 cut(s)	154
BsnI	GGCC	4 cut(s)	5, 143, 147, 389
Bsp143I	GATC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	155, 158, 199
BspANI	GGCC	4 cut(s)	5, 143, 147, 389
BspCNI	CTCAG	3 cut(s)	54, 223, 343
BspMAI	CTGCAG	2 cut(s)	81, 415
BspMI	ACCTGC	3 cut(s)	38, 84, 193
BspPI	GGATC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	46, 70
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	108, 135, 459
BssMI	GATC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	135, 459
Bst2UI	CCWGG	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	105, 145
BstDEI	CTNAG	4 cut(s)	41, 231, 330, 506
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	3 cut(s)	25, 275, 484
BstKTI	GATC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 365
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	108, 207
BstSFI	CTRYAG	3 cut(s)	77, 411, 512
BstV1I	GCAGC	2 cut(s)	461, 508
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	5, 143, 147, 389
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	438
BveI	ACCTGC	3 cut(s)	38, 84, 193
Cac8I	GCNNGC	2 cut(s)	105, 145
CaiI	CAGNNNCTG	2 cut(s)	76, 208
CfoI	GCGC	3 cut(s)	25, 275, 484
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	146, 205
Csp6I	GTAC	3 cut(s)	49, 73, 165
CviAII	CATG	3 cut(s)	118, 136, 182
CviQI	GTAC	3 cut(s)	49, 73, 165
DdeI	CTNAG	4 cut(s)	41, 231, 330, 506
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EaeI	YGGCCR	2 cut(s)	3, 387
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	135, 459
Eco47I	GGWCC	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	135, 459
ErhI	CCWWGG	2 cut(s)	135, 459
FaeI	CATG	3 cut(s)	121, 139, 185
FaiI	YATR	6 cut(s)	119, 137, 183, 251, 424, 514
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	3 cut(s)	117, 135, 181
Fnu4HI	GCNGC	5 cut(s)	156, 159, 200, 450, 497
FokI	GGATG	1 cut(s)	425
FseI	GGCCGGCC	1 cut(s)	147
Fsp4HI	GCNGC	5 cut(s)	156, 159, 200, 450, 497
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	3 cut(s)	24, 274, 483
GluI	GCNGC	5 cut(s)	156, 159, 200, 450, 497
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	5, 143, 147, 389
HapII	CCGG	2 cut(s)	110, 144
HhaI	GCGC	3 cut(s)	25, 275, 484
Hin1II	CATG	3 cut(s)	121, 139, 185
Hin6I	GCGC	3 cut(s)	23, 273, 482
HinP1I	GCGC	3 cut(s)	23, 273, 482
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	2 cut(s)	110, 144
Hpy188I	TCNGA	2 cut(s)	95, 346
Hpy188III	TCNNGA	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	49, 229, 357
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	33, 79, 359, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 365
HpyF3I	CTNAG	4 cut(s)	41, 231, 330, 506
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	121, 139, 185
HspAI	GCGC	3 cut(s)	23, 273, 482
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	3 cut(s)	182, 424, 479
Lsp1109I	GCAGC	2 cut(s)	461, 508
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	2 cut(s)	73, 182
MflI	RGATCY	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	389
MmeI	TCCRAC	3 cut(s)	39, 324, 457
MnlI	CCTC	8 cut(s)	47, 50, 133, 159, 295, 339, 387, 460
Mox20I	TGGCCA	1 cut(s)	389
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	110, 144
MspR9I	CCNGG	2 cut(s)	110, 209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	236, 365
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	11
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	121, 139, 185
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	5 cut(s)	157, 160, 201, 451, 498
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	146, 205
PspPPI	RGGWCCY	1 cut(s)	205
PstI	CTGCAG	2 cut(s)	81, 415
PstNI	CAGNNNCTG	2 cut(s)	76, 208
PsuI	RGATCY	1 cut(s)	11
RigI	GGCCGGCC	1 cut(s)	147
RsaI	GTAC	3 cut(s)	50, 74, 166
RsaNI	GTAC	3 cut(s)	49, 73, 165
SatI	GCNGC	5 cut(s)	156, 159, 200, 450, 497
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	2 cut(s)	146, 205
SbfI	CCTGCAGG	1 cut(s)	81
ScaI	AGTACT	2 cut(s)	50, 166
ScrFI	CCNGG	2 cut(s)	110, 209
SdaI	CCTGCAGG	1 cut(s)	81
SfcI	CTRYAG	3 cut(s)	77, 411, 512
SinI	GGWCC	1 cut(s)	205
Sse8387I	CCTGCAGG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	3 cut(s)	155, 158, 199
StyD4I	CCNGG	2 cut(s)	108, 207
StyI	CCWWGG	2 cut(s)	135, 459
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	246
TatI	WGTACW	2 cut(s)	48, 164
TauI	GCSGC	3 cut(s)	158, 161, 202
TfiI	GAWTC	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	449, 496
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	367
ZrmI	AGTACT	2 cut(s)	50, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.