Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Forward (+)

64054133 .. 64055480

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAGAGAGATCCAACTTTGCGCAGACCTGCAACCTCCTCAGCCAGTACTTGAAGGAGAAGAGAAGCCAGTACCTGCAGGGAGATAGCTTCGGAGTGAAGCCAGCCCCGGCGACCATGAACTTGCTCAACACCATGGAGGCCGGCCCTCCAGCGGCGGCGAGTACTCCAGTAGGCCAGGCTCCGGATCAGCCCAGATCTGCTCCCATGACCATCTTCTACGGCGGGCAGGTCCTGGTTTTCAACGACGTTTCGGCTGAGAAGGCAAAGGAAATTATGGGATTGGCTACCAAAGGAAGCGCTGTGGTTTCCTCTACTGAATCGAATGTTGTAGTCAAACAACAACAACCACCACCTCAGGCTGTTGGGTCGGATTTGCCTATTGCAAGAAGGGCTTCGCTTCACAAGTTTCTGGCCAAGAGGAAAGAGAGAGTGACTGCAGTAGCTCCATACCAACTGAACCACATCCAGAGAGCAGCTTCTCCCAAGGCAGAGGAACCAGTAGGAGCGCAAAGTTCAAAGCAGCTTGAACTCAGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

180

Amino Acids

19.26

Weight (kDa)

9.55

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	64 - 96	5.6e-17	tify domain
Jas_motif	PF09425	127 - 152	5.2e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	3 cut(s)	38, 84, 220
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	3 cut(s)	155, 158, 225
AclWI	GGATC	2 cut(s)	6, 195
AcoI	YGGCCR	1 cut(s)	414
AfaI	GTAC	3 cut(s)	50, 74, 166
AfeI	AGCGCT	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	154, 184
AgsI	TTSAA	4 cut(s)	55, 244, 519, 530
AjnI	CCWGG	2 cut(s)	177, 234
AluBI	AGCT	4 cut(s)	90, 446, 479, 526
AluI	AGCT	4 cut(s)	90, 446, 479, 526
AlwI	GGATC	2 cut(s)	6, 195
AlwNI	CAGNNNCTG	2 cut(s)	76, 235
Aor13HI	TCCGGA	1 cut(s)	184
Aor51HI	AGCGCT	1 cut(s)	301
AoxI	GGCC	4 cut(s)	141, 145, 175, 414
ApeKI	GCWGC	2 cut(s)	476, 523
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	3 cut(s)	25, 302, 511
AspS9I	GGNCC	2 cut(s)	146, 232
AsuC2I	CCSGG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	416
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	488, 535
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	179, 236
BcnI	CCSGG	1 cut(s)	110
BfmI	CTRYAG	3 cut(s)	77, 438, 539
BfoI	RGCGCY	1 cut(s)	303
BfuAI	ACCTGC	3 cut(s)	38, 84, 220
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	4 cut(s)	156, 159, 477, 524
BlsI	GCNGC	4 cut(s)	157, 160, 478, 525
BmcAI	AGTACT	2 cut(s)	50, 166
Bme1390I	CCNGG	3 cut(s)	110, 179, 236
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	146, 232
BmiI	GGNNCC	2 cut(s)	183, 498
BmrFI	CCNGG	3 cut(s)	110, 179, 236
BpmI	CTGGAG	2 cut(s)	135, 153
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	108, 135, 486
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 184
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	4 cut(s)	46, 70, 170, 500
Bse21I	CCTNAGG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	179, 236
BseDI	CCNNGG	3 cut(s)	108, 135, 486
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	154, 184
BseMII	CTCAG	3 cut(s)	55, 249, 371
BseNI	ACTGG	4 cut(s)	46, 70, 170, 500
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	488, 535
BshFI	GGCC	4 cut(s)	143, 147, 177, 416
BsiSI	CCGG	3 cut(s)	110, 144, 185
BslI	CCNNNNNNNGG	2 cut(s)	154, 184
BsnI	GGCC	4 cut(s)	143, 147, 177, 416
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	11, 187, 197
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	155, 158, 225
BspANI	GGCC	4 cut(s)	143, 147, 177, 416
BspCNI	CTCAG	3 cut(s)	54, 250, 370
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	183, 498
BspMAI	CTGCAG	2 cut(s)	81, 442
BspMI	ACCTGC	3 cut(s)	38, 84, 220
BspPI	GGATC	2 cut(s)	6, 195
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	4 cut(s)	46, 70, 170, 500
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	108, 135, 486
BssMI	GATC	3 cut(s)	11, 187, 197
BssT1I	CCWWGG	2 cut(s)	135, 486
Bst2UI	CCWGG	2 cut(s)	179, 236
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	105, 145, 227
BstDEI	CTNAG	4 cut(s)	41, 258, 357, 533
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	25, 302, 511
BstKTI	GATC	3 cut(s)	14, 190, 200
BstMBI	GATC	3 cut(s)	11, 187, 197
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 392
BstNI	CCWGG	2 cut(s)	179, 236
BstSCI	CCNGG	3 cut(s)	108, 177, 234
BstSFI	CTRYAG	3 cut(s)	77, 438, 539
BstV1I	GCAGC	2 cut(s)	488, 535
BstX2I	RGATCY	2 cut(s)	11, 197
BstYI	RGATCY	2 cut(s)	11, 197
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	143, 147, 177, 416
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	465
BveI	ACCTGC	3 cut(s)	38, 84, 220
Cac8I	GCNNGC	3 cut(s)	105, 145, 227
CaiI	CAGNNNCTG	2 cut(s)	76, 235
CfoI	GCGC	3 cut(s)	25, 302, 511
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	146, 232
Csp6I	GTAC	3 cut(s)	49, 73, 165
CviAII	CATG	3 cut(s)	118, 136, 208
CviQI	GTAC	3 cut(s)	49, 73, 165
DdeI	CTNAG	4 cut(s)	41, 258, 357, 533
DpnI	GATC	3 cut(s)	13, 189, 199
DpnII	GATC	3 cut(s)	11, 187, 197
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	135, 486
Eco47I	GGWCC	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	177, 234
EcoT14I	CCWWGG	2 cut(s)	135, 486
ErhI	CCWWGG	2 cut(s)	135, 486
FaeI	CATG	3 cut(s)	121, 139, 211
FaiI	YATR	6 cut(s)	119, 137, 209, 278, 451, 541
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FatI	CATG	3 cut(s)	117, 135, 207
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	4 cut(s)	156, 159, 477, 524
FokI	GGATG	1 cut(s)	452
FseI	GGCCGGCC	1 cut(s)	147
Fsp4HI	GCNGC	4 cut(s)	156, 159, 477, 524
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	3 cut(s)	24, 301, 510
GluI	GCNGC	4 cut(s)	156, 159, 477, 524
GsuI	CTGGAG	2 cut(s)	135, 153
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	4 cut(s)	143, 147, 177, 416
HapII	CCGG	3 cut(s)	110, 144, 185
HhaI	GCGC	3 cut(s)	25, 302, 511
Hin1II	CATG	3 cut(s)	121, 139, 211
Hin6I	GCGC	3 cut(s)	23, 300, 509
HinP1I	GCGC	3 cut(s)	23, 300, 509
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	110, 144, 185
Hpy188I	TCNGA	2 cut(s)	95, 373
Hpy188III	TCNNGA	2 cut(s)	185, 469
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	49, 256, 384
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	33, 79, 386, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 392
HpyF3I	CTNAG	4 cut(s)	41, 258, 357, 533
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	121, 139, 211
HspAI	GCGC	3 cut(s)	23, 300, 509
Kpn2I	TCCGGA	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	11, 187, 197
LmnI	GCTCC	4 cut(s)	187, 208, 451, 506
Lsp1109I	GCAGC	2 cut(s)	488, 535
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	3 cut(s)	13, 189, 199
MboI	GATC	3 cut(s)	11, 187, 197
MboII	GAAGA	2 cut(s)	73, 208
MflI	RGATCY	2 cut(s)	11, 197
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	416
MmeI	TCCRAC	2 cut(s)	39, 351
MnlI	CCTC	8 cut(s)	47, 50, 133, 159, 322, 366, 414, 487
Mox20I	TGGCCA	1 cut(s)	416
MroI	TCCGGA	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	110, 144, 185
MspR9I	CCNGG	3 cut(s)	110, 179, 236
MvaI	CCWGG	2 cut(s)	179, 236
MwoI	GCNNNNNNNGC	2 cut(s)	263, 392
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	11, 187, 197
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	121, 139, 211
NlaIV	GGNNCC	2 cut(s)	183, 498
NmuCI	GTSAC	1 cut(s)	433
NsbI	TGCGCA	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	157, 160, 478, 525
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	177, 234
PspGI	CCWGG	2 cut(s)	177, 234
PspN4I	GGNNCC	2 cut(s)	183, 498
PspPI	GGNCC	2 cut(s)	146, 232
PspPPI	RGGWCCY	1 cut(s)	232
PstI	CTGCAG	2 cut(s)	81, 442
PstNI	CAGNNNCTG	2 cut(s)	76, 235
PsuI	RGATCY	2 cut(s)	11, 197
RigI	GGCCGGCC	1 cut(s)	147
RsaI	GTAC	3 cut(s)	50, 74, 166
RsaNI	GTAC	3 cut(s)	49, 73, 165
SatI	GCNGC	4 cut(s)	156, 159, 477, 524
Sau3AI	GATC	3 cut(s)	11, 187, 197
Sau96I	GGNCC	2 cut(s)	146, 232
SbfI	CCTGCAGG	1 cut(s)	81
ScaI	AGTACT	2 cut(s)	50, 166
ScrFI	CCNGG	3 cut(s)	110, 179, 236
SdaI	CCTGCAGG	1 cut(s)	81
SfcI	CTRYAG	3 cut(s)	77, 438, 539
SinI	GGWCC	1 cut(s)	232
Sse8387I	CCTGCAGG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	3 cut(s)	155, 158, 225
StyD4I	CCNGG	3 cut(s)	108, 177, 234
StyI	CCWWGG	2 cut(s)	135, 486
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	273
TatI	WGTACW	2 cut(s)	48, 164
TauI	GCSGC	2 cut(s)	158, 161
TfiI	GAWTC	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	476, 523
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	394
ZrmI	AGTACT	2 cut(s)	50, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.