Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Reverse (-)

2732646 .. 2733608

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G037800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAGAGAAGGTCAATTTTGCACAAACATGCAACCTCCTGAGCCAGTACTTGAAGGAGAAGAGAAGCCTGCAAGTCCCCACAACCATGGACTTGTTGACTAACATGGAGACCGGCCCAGCTGCTGAGACTCCATCTTCAAAACCCAGTATTGATTTGTTTCCACAGTTTGCTAAGAACCCAGAAGCAGTTTTCTCAAATCAGCCTGGATCTGCCCAAATGACCATCTTTTATGGTGGCCAGGTGCTGGTTTTCAATGATCTTCAAGCAGAAAAGGCAAGAGAAATCATGAATTTCGCTACCAAGGGAAGCTCCAAGATTTCTTCTGGGTTTGTTTCTAATGGTATTGACAAATTCGGTTCTGCCTCTGTGACCAAAATGGTGGCTTCTGAGCCAAATATTGCAGCTAATTCTCAGGATATTCAGAAAGTTCATTCTCAAGTTATTGGTTCAGATTTGCCAATTGCAAGAAGAGCTTCGCTTCACAAGTTTCTAGCGAAGAGGAAAGAAAGGGTGGCAGCCATAGCACCATACCAAGTGAACCACCAAAGAGCATCTCCTTCCAAGTCTGAGGAAGAAATGAGTTCAAGGGATCAAGTAGAAGGCCAATGTTCAAAGCAGCTTGAACTCAGGCTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

214

Amino Acids

23.39

Weight (kDa)

9.04

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	247
AclWI	GGATC	2 cut(s)	217, 600
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	292, 353
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	7 cut(s)	55, 141, 256, 266, 588, 615, 626
AjnI	CCWGG	2 cut(s)	205, 240
AluBI	AGCT	5 cut(s)	122, 312, 407, 476, 622
AluI	AGCT	5 cut(s)	122, 312, 407, 476, 622
Alw26I	GTCTC	2 cut(s)	104, 122
AlwI	GGATC	2 cut(s)	217, 600
AlwNI	CAGNNNCTG	2 cut(s)	125, 247
AoxI	GGCC	3 cut(s)	115, 238, 604
ApeKI	GCWGC	4 cut(s)	122, 404, 518, 619
ApoI	RAATTY	2 cut(s)	292, 353
Asp700I	GAANNNNTTC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	109, 416, 530, 631
BccI	CCATC	2 cut(s)	142, 233
BciT130I	CCWGG	2 cut(s)	207, 242
BcoDI	GTCTC	2 cut(s)	104, 122
BfaI	CTAG	1 cut(s)	494
BisI	GCNGC	4 cut(s)	123, 405, 519, 620
BlsI	GCNGC	4 cut(s)	124, 406, 520, 621
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	207, 242
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	207, 242
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	563
BmuI	ACTGGG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	87, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	46, 147
BseBI	CCWGG	2 cut(s)	207, 242
BseDI	CCNNGG	2 cut(s)	87, 303
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	5 cut(s)	32, 117, 381, 428, 561
BseNI	ACTGG	2 cut(s)	46, 147
BseXI	GCAGC	4 cut(s)	109, 416, 530, 631
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	3 cut(s)	117, 240, 606
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	104, 122
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	117, 240, 606
Bso31I	GGTCTC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	209, 259, 592
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	3 cut(s)	117, 240, 606
BspCNI	CTCAG	6 cut(s)	33, 118, 382, 427, 562, 642
BspHI	TCATGA	1 cut(s)	288
BspPI	GGATC	2 cut(s)	217, 600
BspQI	GCTCTTC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	46, 147
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	87, 303
BssMI	GATC	3 cut(s)	209, 259, 592
BssT1I	CCWWGG	2 cut(s)	87, 303
Bst2UI	CCWGG	2 cut(s)	207, 242
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	3 cut(s)	56, 466, 494
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	7 cut(s)	41, 126, 174, 390, 414, 570, 629
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	212, 262, 595
BstMAI	GTCTC	2 cut(s)	104, 122
BstMBI	GATC	3 cut(s)	209, 259, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 473, 524
BstNI	CCWGG	2 cut(s)	207, 242
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	205, 240
BstV1I	GCAGC	4 cut(s)	109, 416, 530, 631
BstX2I	RGATCY	1 cut(s)	209
BstXI	CCANNNNNNTGG	2 cut(s)	88, 382
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	117, 240, 606
BtgI	CCRYGG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	71
CaiI	CAGNNNCTG	2 cut(s)	125, 247
CciI	TCATGA	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	4 cut(s)	30, 88, 106, 289
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	7 cut(s)	41, 126, 174, 390, 414, 570, 629
DpnI	GATC	3 cut(s)	211, 261, 594
DpnII	GATC	3 cut(s)	209, 259, 592
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	3 cut(s)	56, 466, 494
EarI	CTCTTC	3 cut(s)	56, 466, 494
Eco130I	CCWWGG	2 cut(s)	87, 303
Eco31I	GGTCTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	205, 240
EcoT14I	CCWWGG	2 cut(s)	87, 303
ErhI	CCWWGG	2 cut(s)	87, 303
FaeI	CATG	4 cut(s)	33, 91, 109, 292
FaiI	YATR	8 cut(s)	31, 89, 107, 234, 290, 524, 532, 637
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	4 cut(s)	29, 87, 105, 288
Fnu4HI	GCNGC	4 cut(s)	123, 405, 519, 620
Fsp4HI	GCNGC	4 cut(s)	123, 405, 519, 620
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	4 cut(s)	123, 405, 519, 620
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	117, 240, 606
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	4 cut(s)	33, 91, 109, 292
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	99, 541
Hpy188I	TCNGA	4 cut(s)	391, 426, 454, 571
Hpy188III	TCNNGA	3 cut(s)	40, 289, 416
Hpy8I	GTNNAC	2 cut(s)	99, 541
HpyAV	CCTTC	4 cut(s)	4, 49, 570, 596
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	5 cut(s)	23, 33, 73, 404, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 473, 524
HpyF3I	CTNAG	7 cut(s)	41, 126, 174, 390, 414, 570, 629
Hsp92II	CATG	4 cut(s)	33, 91, 109, 292
Kzo9I	GATC	3 cut(s)	209, 259, 592
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	4 cut(s)	109, 416, 530, 631
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	211, 261, 594
MboI	GATC	3 cut(s)	209, 259, 592
MboII	GAAGA	7 cut(s)	73, 129, 254, 315, 483, 511, 587
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	5 cut(s)	16, 292, 353, 409, 462
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	47, 376, 495, 565
Mox20I	TGGCCA	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	240
MslI	CAYNNNNRTG	2 cut(s)	28, 86
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	207, 242
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	2 cut(s)	207, 242
MwoI	GCNNNNNNNGC	3 cut(s)	275, 473, 524
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	209, 259, 592
NlaIII	CATG	4 cut(s)	33, 91, 109, 292
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	33
PagI	TCATGA	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	475
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	124, 406, 520, 621
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	205, 240
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	205, 240
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	2 cut(s)	125, 247
PsuI	RGATCY	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	28, 86
SapI	GCTCTTC	1 cut(s)	466
SatI	GCNGC	4 cut(s)	123, 405, 519, 620
Sau3AI	GATC	3 cut(s)	209, 259, 592
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	207, 242
SetI	ASST	8 cut(s)	15, 39, 124, 246, 314, 409, 478, 624
SfaNI	GCATC	1 cut(s)	563
SmiMI	CAYNNNNRTG	2 cut(s)	28, 86
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
Sse9I	AATT	5 cut(s)	16, 292, 353, 409, 462
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	2 cut(s)	205, 240
StyI	CCWWGG	2 cut(s)	87, 303
TaaI	ACNGT	1 cut(s)	168
TasI	AATT	5 cut(s)	16, 292, 353, 409, 462
TatI	WGTACW	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	4 cut(s)	122, 404, 518, 619
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	305, 422
Van91I	CCANNNNNTGG	1 cut(s)	247
XapI	RAATTY	2 cut(s)	292, 353
XceI	RCATGY	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	475
XspI	CTAG	1 cut(s)	494
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.