Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Reverse (-)

15274688 .. 15275998

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1178600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCAGCTGAGAAGTTGAATTTCGCACAGACATGCAACCTCTTGAGCCAGTTCTTGAAGGAGAAGAGAACCCTTCAAGTCATCCCTCCCACAACCATGAACTTGCTGACGACCATGGAGGCTGCTGCTTCGAACTCAGTTGATCAGACGGCTCAGACTCCGTCGTCAAAACCCAGCATCGATTTGCTTCCGCAGTTCACCAAATACCCAGAAGCGGCTTTGGGAGATCAGCAGCCTGGATCTGCTGCCCAGATGACTATTTTTTATGGTGGGCAGGTGCTGGTTTTCAATGATCTGCAGGCTGAGAAGGCAAAGGAAATCATGGGTTTGGCTACAACTGGAAGCTCCAAGATTTCTGCTGGATTTGTGAAGAAATTGGGTTCTGAGAATCAGTCGAATGTTGTCGCTGAAAATAAATCTCAGGAAATTAAGGTGCCAACCCAGGCCAGAAGAGCTTCACTACACAAGTTCTTGGCCAAGAGAAAAGAAAGGGTGACAGCAGTAGCACCATATCAACTGAACAACCAGAGAGCATCTTCTCCTGCCAAAAGTGACGAGCAAACGAGTTCGAGGGCAGAAGGGCAAAGTTCAAAGCAGCTTGAACTCAGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

205

Amino Acids

22.09

Weight (kDa)

9.43

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	81 - 111	1.8e-15	tify domain
Jas_motif	PF09425	148 - 172	1.7e-10	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	433
AciI	CCGC	2 cut(s)	191, 215
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	19, 58, 77, 289, 591, 602
AjnI	CCWGG	2 cut(s)	235, 441
AluBI	AGCT	4 cut(s)	8, 345, 455, 598
AluI	AGCT	4 cut(s)	8, 345, 455, 598
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	2 cut(s)	444, 474
ApeKI	GCWGC	6 cut(s)	5, 122, 125, 232, 245, 595
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	190, 505
AsuII	TTCGAA	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	433
BbvI	GCAGC	6 cut(s)	17, 109, 112, 232, 244, 607
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	237, 443
BclI	TGATCA	1 cut(s)	142
BfaI	CTAG	1 cut(s)	613
BfmI	CTRYAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	7 cut(s)	6, 123, 126, 216, 233, 246, 596
BlsI	GCNGC	7 cut(s)	7, 124, 127, 217, 234, 247, 597
Bme1390I	CCNGG	2 cut(s)	237, 443
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	237, 443
BmsI	GCATC	2 cut(s)	186, 542
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	114, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	49, 343
BseBI	CCWGG	2 cut(s)	237, 443
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	114, 441
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	5 cut(s)	150, 167, 294, 375, 434
BseNI	ACTGG	2 cut(s)	49, 343
BseXI	GCAGC	6 cut(s)	17, 109, 112, 232, 244, 607
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	446, 476
BshNI	GGYRCC	1 cut(s)	433
BshVI	ATCGAT	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	214
BsnI	GGCC	2 cut(s)	446, 476
Bsp119I	TTCGAA	1 cut(s)	131
Bsp143I	GATC	4 cut(s)	142, 226, 239, 292
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	191, 215
BspANI	GGCC	2 cut(s)	446, 476
BspCNI	CTCAG	5 cut(s)	149, 166, 295, 376, 433
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	445
BspT104I	TTCGAA	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	49, 343
BssECI	CCNNGG	2 cut(s)	114, 441
BssMI	GATC	4 cut(s)	142, 226, 239, 292
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	237, 443
Bst6I	CTCTTC	2 cut(s)	59, 445
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	7 cut(s)	9, 136, 153, 303, 384, 420, 605
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	4 cut(s)	145, 229, 242, 295
BstMBI	GATC	4 cut(s)	142, 226, 239, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 452
BstNI	CCWGG	2 cut(s)	237, 443
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	235, 441
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	6 cut(s)	17, 109, 112, 232, 244, 607
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	446, 476
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	180
CviAII	CATG	4 cut(s)	33, 97, 115, 322
DdeI	CTNAG	7 cut(s)	9, 136, 153, 303, 384, 420, 605
DpnI	GATC	4 cut(s)	144, 228, 241, 294
DpnII	GATC	4 cut(s)	142, 226, 239, 292
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	59, 445
EarI	CTCTTC	2 cut(s)	59, 445
Eco130I	CCWWGG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	235, 441
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	36, 100, 118, 325
FaiI	YATR	6 cut(s)	34, 98, 116, 267, 323, 511
FatI	CATG	4 cut(s)	32, 96, 114, 321
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	7 cut(s)	6, 123, 126, 216, 233, 246, 596
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	7 cut(s)	6, 123, 126, 216, 233, 246, 596
FspBI	CTAG	1 cut(s)	613
GluI	GCNGC	7 cut(s)	6, 123, 126, 216, 233, 246, 596
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	446, 476
Hin1II	CATG	4 cut(s)	36, 100, 118, 325
HinfI	GANTC	2 cut(s)	157, 388
HphI	GGTGA	2 cut(s)	190, 505
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	147, 156, 385
Hpy188III	TCNNGA	3 cut(s)	43, 55, 422
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	4 cut(s)	52, 83, 301, 572
HpyCH4V	TGCA	2 cut(s)	36, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 452
HpyF3I	CTNAG	7 cut(s)	9, 136, 153, 303, 384, 420, 605
Hsp92II	CATG	4 cut(s)	36, 100, 118, 325
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	142, 226, 239, 292
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	6 cut(s)	17, 109, 112, 232, 244, 607
LweI	GCATC	2 cut(s)	186, 542
MaeI	CTAG	1 cut(s)	613
MaeIII	GTNAC	2 cut(s)	493, 551
MalI	GATC	4 cut(s)	144, 228, 241, 294
MboI	GATC	4 cut(s)	142, 226, 239, 292
MboII	GAAGA	4 cut(s)	76, 382, 462, 528
MflI	RGATCY	1 cut(s)	239
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	3 cut(s)	19, 374, 426
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	50, 96, 112, 564
Mox20I	TGGCCA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	2 cut(s)	31, 95
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	237, 443
MvaI	CCWGG	2 cut(s)	237, 443
MwoI	GCNNNNNNNGC	2 cut(s)	308, 452
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	4 cut(s)	142, 226, 239, 292
NlaIII	CATG	4 cut(s)	36, 100, 118, 325
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	2 cut(s)	493, 551
NspI	RCATGY	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	388
PflFI	GACNNNGTC	1 cut(s)	160
PkrI	GCNGC	7 cut(s)	7, 124, 127, 217, 234, 247, 597
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	235, 441
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	235, 441
PspN4I	GGNNCC	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	2 cut(s)	31, 95
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	7 cut(s)	6, 123, 126, 216, 233, 246, 596
Sau3AI	GATC	4 cut(s)	142, 226, 239, 292
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	237, 443
SetI	ASST	7 cut(s)	10, 42, 279, 347, 435, 457, 600
SfaNI	GCATC	2 cut(s)	186, 542
SfcI	CTRYAG	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	31, 95
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	3 cut(s)	19, 374, 426
SsiI	CCGC	2 cut(s)	191, 215
SspMI	CTAG	1 cut(s)	613
StyD4I	CCNGG	2 cut(s)	235, 441
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	4 cut(s)	131, 180, 395, 569
TasI	AATT	3 cut(s)	19, 374, 426
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	493, 551
TseI	GCWGC	6 cut(s)	5, 122, 125, 232, 245, 595
Tsp45I	GTSAC	2 cut(s)	493, 551
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.