Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Reverse (-)

7807132 .. 7807762

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTACGCACTTGACTCCACGTGCAAAAAAAACGTGCTTGAAAAATCCAATAAAAAAATCAATATTCCTACACAGGCAGCCTTACTTGACTTCCCCATTTATATTCCCCTCCTCCCAACTCCACCACTCCCCACCATTCAGCAAACCATCACCGAGATTACATCAAATTTTCTCTCTCAATTGTTTTCATCGACAATTTTCATCACAAAGATATCCGACATGGCAGCTGAGAAGTTGAATTTCGCACAGACATGCAACCTCTTGAGCCAGTTCTTGAAGGAGAAGAGAACCCTCCAAGTCGTCCCTCCCACAACCATGAACTTGCTGACGGCCATGGAGGCTGCTGCTACGAACCCAGTTGATCAGACGGCTCAGACTCCGTCATCAAAACCCAGCATCGATTTGCTTCCGCATTTTACCAAAAACCCAGAAGCGGCTTTGGGAGATCAGCAGCCAGGATCTGCTGCCCAGATGACTATTTTTTATGGTGGGCAGGTGCTGGTTTTCAATCGATCTGCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

175

Amino Acids

18.97

Weight (kDa)

7.73

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	154 - 170	1.7e-07	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	2 cut(s)	410, 434
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	166, 238
AcvI	CACGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	41, 238, 277, 508
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	466
AlwNI	CAGNNNCTG	2 cut(s)	461, 499
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	6 cut(s)	77, 224, 341, 344, 451, 464
ApoI	RAATTY	2 cut(s)	166, 238
AsuHPI	GGTGA	1 cut(s)	142
BbrPI	CACGTG	1 cut(s)	21
BbvI	GCAGC	6 cut(s)	89, 236, 328, 331, 451, 463
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	345, 384
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	1 cut(s)	361
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	7 cut(s)	78, 225, 342, 345, 435, 452, 465
BlsI	GCNGC	7 cut(s)	79, 226, 343, 346, 436, 453, 466
Bme1390I	CCNGG	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	456
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	405
BmuI	ACTGGG	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	283
Bsa29I	ATCGAT	2 cut(s)	399, 511
BsaAI	YACGTR	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	268, 356
BseBI	CCWGG	1 cut(s)	456
BseCI	ATCGAT	2 cut(s)	399, 511
BseDI	CCNNGG	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	219, 386
BseNI	ACTGG	2 cut(s)	268, 356
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	6 cut(s)	89, 236, 328, 331, 451, 463
BseYI	CCCAGC	1 cut(s)	392
BshFI	GGCC	1 cut(s)	332
BshVI	ATCGAT	2 cut(s)	399, 511
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	361, 445, 458, 512
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	2 cut(s)	410, 434
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	220, 385
BspDI	ATCGAT	2 cut(s)	399, 511
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	268, 356
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	4 cut(s)	361, 445, 458, 512
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	2 cut(s)	228, 372
BstDSI	CCRYGG	1 cut(s)	333
BstKTI	GATC	4 cut(s)	364, 448, 461, 515
BstMBI	GATC	4 cut(s)	361, 445, 458, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	6 cut(s)	89, 236, 328, 331, 451, 463
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
Bsu15I	ATCGAT	2 cut(s)	399, 511
BsuRI	GGCC	1 cut(s)	332
BsuTUI	ATCGAT	2 cut(s)	399, 511
BtgI	CCRYGG	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	520
CaiI	CAGNNNCTG	2 cut(s)	461, 499
ClaI	ATCGAT	2 cut(s)	399, 511
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	220, 252, 316, 334
CviJI	RGCY	9 cut(s)	80, 227, 267, 332, 341, 371, 437, 454, 522
CviKI_1	RGCY	9 cut(s)	80, 227, 267, 332, 341, 371, 437, 454, 522
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	228, 372
DpnI	GATC	4 cut(s)	363, 447, 460, 514
DpnII	GATC	4 cut(s)	361, 445, 458, 512
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	213
Eco72I	CACGTG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	4 cut(s)	223, 255, 319, 337
FaiI	YATR	6 cut(s)	102, 221, 253, 317, 335, 486
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	4 cut(s)	219, 251, 315, 333
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	7 cut(s)	78, 225, 342, 345, 435, 452, 465
Fsp4HI	GCNGC	7 cut(s)	78, 225, 342, 345, 435, 452, 465
GluI	GCNGC	7 cut(s)	78, 225, 342, 345, 435, 452, 465
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	223, 255, 319, 337
HinfI	GANTC	2 cut(s)	14, 376
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	217, 366, 375
Hpy188III	TCNNGA	2 cut(s)	262, 274
HpyAV	CCTTC	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	20, 33
HpyCH4V	TGCA	3 cut(s)	24, 255, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	228, 372
HpySE526I	ACGT	2 cut(s)	20, 33
Hsp92II	CATG	4 cut(s)	223, 255, 319, 337
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	361, 445, 458, 512
Lsp1109I	GCAGC	6 cut(s)	89, 236, 328, 331, 451, 463
LweI	GCATC	1 cut(s)	405
MaeII	ACGT	2 cut(s)	20, 33
MalI	GATC	4 cut(s)	363, 447, 460, 514
MboI	GATC	4 cut(s)	361, 445, 458, 512
MboII	GAAGA	1 cut(s)	295
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	458
MluCI	AATT	4 cut(s)	166, 179, 195, 238
MlyI	GAGTC	2 cut(s)	8, 370
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	119, 122, 269, 302, 315, 331
MslI	CAYNNNNRTG	2 cut(s)	250, 314
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	456
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	338
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	361, 445, 458, 512
NlaIII	CATG	4 cut(s)	223, 255, 319, 337
NspI	RCATGY	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	484
PflFI	GACNNNGTC	1 cut(s)	379
PkrI	GCNGC	7 cut(s)	79, 226, 343, 346, 436, 453, 466
PleI	GAGTC	2 cut(s)	8, 370
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
PpsI	GAGTC	2 cut(s)	8, 370
Ppu21I	YACGTR	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	454
PspCI	CACGTG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	2 cut(s)	461, 499
PsuI	RGATCY	1 cut(s)	458
PsyI	GACNNNGTC	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	250, 314
SatI	GCNGC	7 cut(s)	78, 225, 342, 345, 435, 452, 465
Sau3AI	GATC	4 cut(s)	361, 445, 458, 512
SchI	GAGTC	2 cut(s)	8, 370
ScrFI	CCNGG	1 cut(s)	456
SetI	ASST	5 cut(s)	23, 36, 229, 261, 498
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	2 cut(s)	250, 314
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	4 cut(s)	166, 179, 195, 238
SsiI	CCGC	2 cut(s)	410, 434
SspI	AATATT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	2 cut(s)	23, 36
TaqI	TCGA	3 cut(s)	191, 399, 511
TasI	AATT	4 cut(s)	166, 179, 195, 238
TauI	GCSGC	1 cut(s)	437
TseI	GCWGC	6 cut(s)	77, 224, 341, 344, 451, 464
TspDTI	ATGAA	3 cut(s)	177, 190, 332
TspGWI	ACGGA	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	379
XapI	RAATTY	2 cut(s)	166, 238
XceI	RCATGY	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.