Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Forward (+)

59425689 .. 59427187

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG437600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTGAGAGATCCAACTTTGCGCAGACCTGCAACCTCCTCAGCCAGTACTTGAAGGAGAAGAGAAGCCAGTACCTGCAGGGAGATAGCTTCGGAGTGAAGCCAGCCCCGGCGACCATGAACTTGCTCAACACCATGGAGGCCGGCCCTCCAGCGGCGGCGAGTACTCCAGTGGGCCAGGCTCCGGATCAGCCCAGATCTGCTCCCATGACCATCTTCTTCGGCGGGCAGGTCCTGGTTTTCAACGACGTTTCGGCTGAGAAGGCAAAGGAAATTATGGGATTGGCTACCAAAGGAAGCGCTGTGGTTTCCTCTACTGAATCGAATGTTGTAGTCAAACAACAACAACAACCACCACCACCTCAGGCTGTTGGGTCGGATTTGCCTATTGCAAGAAGGGCTTCGCTTCACAAGTTTCTGGCCAAGAGGAAAGAGAGAGTGACTGCAATAGCTCCATACCAACTGAACCACATCCAGAGAGCAGCTTCTCCCAAGGCAGAGGAACCAGTAGGAGCGCAAAGTTCAAAGCAGCTTGAACTCAGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

182

Amino Acids

19.48

Weight (kDa)

9.59

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	64 - 96	3.2e-16	tify domain
Jas_motif	PF09425	129 - 154	2.9e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	3 cut(s)	38, 84, 220
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	3 cut(s)	155, 158, 225
AclWI	GGATC	2 cut(s)	6, 195
AcoI	YGGCCR	1 cut(s)	420
AfaI	GTAC	3 cut(s)	50, 74, 166
AfeI	AGCGCT	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	154, 184
AgsI	TTSAA	4 cut(s)	55, 244, 525, 536
AjnI	CCWGG	2 cut(s)	177, 234
AluBI	AGCT	4 cut(s)	90, 452, 485, 532
AluI	AGCT	4 cut(s)	90, 452, 485, 532
AlwI	GGATC	2 cut(s)	6, 195
AlwNI	CAGNNNCTG	2 cut(s)	76, 235
Aor13HI	TCCGGA	1 cut(s)	184
Aor51HI	AGCGCT	1 cut(s)	301
AoxI	GGCC	4 cut(s)	141, 145, 175, 420
ApeKI	GCWGC	2 cut(s)	482, 529
Asp700I	GAANNNNTTC	1 cut(s)	400
AspLEI	GCGC	3 cut(s)	25, 302, 517
AspS9I	GGNCC	3 cut(s)	146, 175, 232
AsuC2I	CCSGG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	363
BalI	TGGCCA	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	494, 541
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	179, 236
BcnI	CCSGG	1 cut(s)	110
BfmI	CTRYAG	2 cut(s)	77, 545
BfoI	RGCGCY	1 cut(s)	303
BfuAI	ACCTGC	3 cut(s)	38, 84, 220
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	4 cut(s)	156, 159, 483, 530
BlsI	GCNGC	4 cut(s)	157, 160, 484, 531
BmcAI	AGTACT	2 cut(s)	50, 166
Bme1390I	CCNGG	3 cut(s)	110, 179, 236
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	3 cut(s)	146, 175, 232
BmiI	GGNNCC	2 cut(s)	183, 504
BmrFI	CCNGG	3 cut(s)	110, 179, 236
BpmI	CTGGAG	2 cut(s)	135, 153
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	108, 135, 492
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 184
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	4 cut(s)	46, 70, 170, 506
Bse21I	CCTNAGG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	179, 236
BseDI	CCNNGG	3 cut(s)	108, 135, 492
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	154, 184
BseMII	CTCAG	3 cut(s)	55, 249, 377
BseNI	ACTGG	4 cut(s)	46, 70, 170, 506
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	494, 541
BshFI	GGCC	4 cut(s)	143, 147, 177, 422
BsiSI	CCGG	3 cut(s)	110, 144, 185
BslI	CCNNNNNNNGG	2 cut(s)	154, 184
BsnI	GGCC	4 cut(s)	143, 147, 177, 422
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	11, 187, 197
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	155, 158, 225
BspANI	GGCC	4 cut(s)	143, 147, 177, 422
BspCNI	CTCAG	3 cut(s)	54, 250, 376
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	183, 504
BspMAI	CTGCAG	1 cut(s)	81
BspMI	ACCTGC	3 cut(s)	38, 84, 220
BspPI	GGATC	2 cut(s)	6, 195
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	4 cut(s)	46, 70, 170, 506
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	108, 135, 492
BssMI	GATC	3 cut(s)	11, 187, 197
BssT1I	CCWWGG	2 cut(s)	135, 492
Bst2UI	CCWGG	2 cut(s)	179, 236
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	105, 145, 227
BstDEI	CTNAG	5 cut(s)	6, 41, 258, 363, 539
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	471
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	25, 302, 517
BstKTI	GATC	3 cut(s)	14, 190, 200
BstMBI	GATC	3 cut(s)	11, 187, 197
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 398
BstNI	CCWGG	2 cut(s)	179, 236
BstSCI	CCNGG	3 cut(s)	108, 177, 234
BstSFI	CTRYAG	2 cut(s)	77, 545
BstV1I	GCAGC	2 cut(s)	494, 541
BstX2I	RGATCY	2 cut(s)	11, 197
BstYI	RGATCY	2 cut(s)	11, 197
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	4 cut(s)	143, 147, 177, 422
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	3 cut(s)	38, 84, 220
Cac8I	GCNNGC	3 cut(s)	105, 145, 227
CaiI	CAGNNNCTG	2 cut(s)	76, 235
CfoI	GCGC	3 cut(s)	25, 302, 517
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	146, 175, 232
Csp6I	GTAC	3 cut(s)	49, 73, 165
CviAII	CATG	3 cut(s)	118, 136, 208
CviQI	GTAC	3 cut(s)	49, 73, 165
DdeI	CTNAG	5 cut(s)	6, 41, 258, 363, 539
DpnI	GATC	3 cut(s)	13, 189, 199
DpnII	GATC	3 cut(s)	11, 187, 197
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	135, 492
Eco47I	GGWCC	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	177, 234
EcoT14I	CCWWGG	2 cut(s)	135, 492
ErhI	CCWWGG	2 cut(s)	135, 492
FaeI	CATG	3 cut(s)	121, 139, 211
FaiI	YATR	6 cut(s)	119, 137, 209, 278, 457, 547
FalI	AAGNNNNNCTT	2 cut(s)	385, 417
FatI	CATG	3 cut(s)	117, 135, 207
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	4 cut(s)	156, 159, 483, 530
FokI	GGATG	1 cut(s)	458
FseI	GGCCGGCC	1 cut(s)	147
Fsp4HI	GCNGC	4 cut(s)	156, 159, 483, 530
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	3 cut(s)	24, 301, 516
GluI	GCNGC	4 cut(s)	156, 159, 483, 530
GsuI	CTGGAG	2 cut(s)	135, 153
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	4 cut(s)	143, 147, 177, 422
HapII	CCGG	3 cut(s)	110, 144, 185
HhaI	GCGC	3 cut(s)	25, 302, 517
Hin1II	CATG	3 cut(s)	121, 139, 211
Hin6I	GCGC	3 cut(s)	23, 300, 515
HinP1I	GCGC	3 cut(s)	23, 300, 515
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	110, 144, 185
Hpy188I	TCNGA	2 cut(s)	95, 379
Hpy188III	TCNNGA	2 cut(s)	185, 475
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	49, 256, 390
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	33, 79, 392, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 398
HpyF3I	CTNAG	5 cut(s)	6, 41, 258, 363, 539
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	121, 139, 211
HspAI	GCGC	3 cut(s)	23, 300, 515
Kpn2I	TCCGGA	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	11, 187, 197
LmnI	GCTCC	4 cut(s)	187, 208, 457, 512
Lsp1109I	GCAGC	2 cut(s)	494, 541
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	13, 189, 199
MboI	GATC	3 cut(s)	11, 187, 197
MboII	GAAGA	3 cut(s)	73, 208, 211
MflI	RGATCY	2 cut(s)	11, 197
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	39, 357
MnlI	CCTC	8 cut(s)	47, 50, 133, 159, 322, 372, 420, 493
Mox20I	TGGCCA	1 cut(s)	422
MroI	TCCGGA	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	110, 144, 185
MspR9I	CCNGG	3 cut(s)	110, 179, 236
MvaI	CCWGG	2 cut(s)	179, 236
MwoI	GCNNNNNNNGC	2 cut(s)	263, 398
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	11, 187, 197
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	121, 139, 211
NlaIV	GGNNCC	2 cut(s)	183, 504
NmuCI	GTSAC	1 cut(s)	439
NsbI	TGCGCA	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	157, 160, 484, 531
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	177, 234
PspGI	CCWGG	2 cut(s)	177, 234
PspN4I	GGNNCC	2 cut(s)	183, 504
PspPI	GGNCC	3 cut(s)	146, 175, 232
PspPPI	RGGWCCY	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	81
PstNI	CAGNNNCTG	2 cut(s)	76, 235
PsuI	RGATCY	2 cut(s)	11, 197
RigI	GGCCGGCC	1 cut(s)	147
RsaI	GTAC	3 cut(s)	50, 74, 166
RsaNI	GTAC	3 cut(s)	49, 73, 165
SatI	GCNGC	4 cut(s)	156, 159, 483, 530
Sau3AI	GATC	3 cut(s)	11, 187, 197
Sau96I	GGNCC	3 cut(s)	146, 175, 232
SbfI	CCTGCAGG	1 cut(s)	81
ScaI	AGTACT	2 cut(s)	50, 166
ScrFI	CCNGG	3 cut(s)	110, 179, 236
SdaI	CCTGCAGG	1 cut(s)	81
SfcI	CTRYAG	2 cut(s)	77, 545
SinI	GGWCC	1 cut(s)	232
Sse8387I	CCTGCAGG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	3 cut(s)	155, 158, 225
StyD4I	CCNGG	3 cut(s)	108, 177, 234
StyI	CCWWGG	2 cut(s)	135, 492
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	273
TatI	WGTACW	2 cut(s)	48, 164
TauI	GCSGC	2 cut(s)	158, 161
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	482, 529
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	400
ZrmI	AGTACT	2 cut(s)	50, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.