Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Forward (+)

62345346 .. 62346004

Gene Structure 659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCGAGAGATCCAACTTTGCGCAGACCTGCAACCTCCTCAGCCAGTACTTGAAGGAGAAGAGAAGCCAGTACCTGCAGGGAGATAGCTTCGGAGTGAAGCCAGCCCCGGCGACCATGAACTTGCTCAACACCATGGAGGCCGGCCCTCCAGCGGCGGCGAGTCCAGTGGGCCAGGCTCCGGATCAGCCCAGATCTGCTCCCATGACCATCTTTTACGGCGGCCAGGTCCTGGTTTTCAACGACGTTCCGGCTGAGAAGGCAAAGGAAATTATGGGATTGGCTACCAAAGGAAGCGCTGTGGTTTCCTCTACTGAATCGAATGTTGTTGTCAAACAACAACCACCACCACCACCACCTCAGGCTGTTGGGTCGGATTTGCCTATTGCAAGAAGGGCTTCGCTTCACAAGTTTCTGGCCAAGAGGAAAGAGAGAGTGACTGCAGTAGCTCCATACCAACTGAACCACATCCAGAGAGCAGCTTCTCCCAAGGCAGAGGAACGAGTGGGAGCGCAAAGTTCAAAGCAGCTTGAACTCAGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

182

Amino Acids

19.39

Weight (kDa)

9.67

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	63 - 95	1.3e-17	tify domain
Jas_motif	PF09425	128 - 153	5.2e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	2 cut(s)	38, 84
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	3 cut(s)	155, 158, 222
AclWI	GGATC	2 cut(s)	6, 192
AcoI	YGGCCR	3 cut(s)	3, 223, 417
AfaI	GTAC	2 cut(s)	50, 74
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	3 cut(s)	154, 181, 232
AgsI	TTSAA	4 cut(s)	55, 241, 522, 533
AjnI	CCWGG	3 cut(s)	174, 225, 231
AluBI	AGCT	4 cut(s)	90, 449, 482, 529
AluI	AGCT	4 cut(s)	90, 449, 482, 529
AlwI	GGATC	2 cut(s)	6, 192
AlwNI	CAGNNNCTG	2 cut(s)	76, 232
Aor13HI	TCCGGA	1 cut(s)	181
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	6 cut(s)	3, 141, 145, 172, 223, 417
ApeKI	GCWGC	2 cut(s)	479, 526
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	3 cut(s)	25, 299, 514
AspS9I	GGNCC	3 cut(s)	146, 172, 229
AsuC2I	CCSGG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	491, 538
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	3 cut(s)	176, 227, 233
BcnI	CCSGG	1 cut(s)	110
BfmI	CTRYAG	3 cut(s)	77, 441, 542
BfoI	RGCGCY	1 cut(s)	300
BfuAI	ACCTGC	2 cut(s)	38, 84
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	5 cut(s)	156, 159, 223, 480, 527
BlsI	GCNGC	5 cut(s)	157, 160, 224, 481, 528
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	110, 176, 227, 233
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	146, 172, 229
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	4 cut(s)	110, 176, 227, 233
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	108, 135, 489
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 181, 232
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	46, 70, 167
Bse21I	CCTNAGG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	3 cut(s)	176, 227, 233
BseDI	CCNNGG	3 cut(s)	108, 135, 489
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	154, 181, 232
BseMII	CTCAG	3 cut(s)	55, 246, 374
BseNI	ACTGG	3 cut(s)	46, 70, 167
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	491, 538
BshFI	GGCC	6 cut(s)	5, 143, 147, 174, 225, 419
BsiSI	CCGG	4 cut(s)	110, 144, 182, 251
BslI	CCNNNNNNNGG	3 cut(s)	154, 181, 232
BsnI	GGCC	6 cut(s)	5, 143, 147, 174, 225, 419
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	11, 184, 194
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	155, 158, 222
BspANI	GGCC	6 cut(s)	5, 143, 147, 174, 225, 419
BspCNI	CTCAG	3 cut(s)	54, 247, 373
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	2 cut(s)	81, 445
BspMI	ACCTGC	2 cut(s)	38, 84
BspPI	GGATC	2 cut(s)	6, 192
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	46, 70, 167
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	108, 135, 489
BssMI	GATC	3 cut(s)	11, 184, 194
BssT1I	CCWWGG	2 cut(s)	135, 489
Bst2UI	CCWGG	3 cut(s)	176, 227, 233
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	105, 145
BstDEI	CTNAG	4 cut(s)	41, 255, 360, 536
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	3 cut(s)	25, 299, 514
BstKTI	GATC	3 cut(s)	14, 187, 197
BstMBI	GATC	3 cut(s)	11, 184, 194
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 395
BstNI	CCWGG	3 cut(s)	176, 227, 233
BstSCI	CCNGG	4 cut(s)	108, 174, 225, 231
BstSFI	CTRYAG	3 cut(s)	77, 441, 542
BstV1I	GCAGC	2 cut(s)	491, 538
BstX2I	RGATCY	2 cut(s)	11, 194
BstYI	RGATCY	2 cut(s)	11, 194
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	6 cut(s)	5, 143, 147, 174, 225, 419
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	2 cut(s)	38, 84
Cac8I	GCNNGC	2 cut(s)	105, 145
CaiI	CAGNNNCTG	2 cut(s)	76, 232
CfoI	GCGC	3 cut(s)	25, 299, 514
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	146, 172, 229
Csp6I	GTAC	2 cut(s)	49, 73
CviAII	CATG	3 cut(s)	118, 136, 205
CviQI	GTAC	2 cut(s)	49, 73
DdeI	CTNAG	4 cut(s)	41, 255, 360, 536
DpnI	GATC	3 cut(s)	13, 186, 196
DpnII	GATC	3 cut(s)	11, 184, 194
EaeI	YGGCCR	3 cut(s)	3, 223, 417
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	135, 489
Eco47I	GGWCC	1 cut(s)	229
Eco47III	AGCGCT	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	174, 225, 231
EcoT14I	CCWWGG	2 cut(s)	135, 489
ErhI	CCWWGG	2 cut(s)	135, 489
FaeI	CATG	3 cut(s)	121, 139, 208
FaiI	YATR	6 cut(s)	119, 137, 206, 275, 454, 544
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FatI	CATG	3 cut(s)	117, 135, 204
Fnu4HI	GCNGC	5 cut(s)	156, 159, 223, 480, 527
FokI	GGATG	1 cut(s)	455
FseI	GGCCGGCC	1 cut(s)	147
Fsp4HI	GCNGC	5 cut(s)	156, 159, 223, 480, 527
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	3 cut(s)	24, 298, 513
GluI	GCNGC	5 cut(s)	156, 159, 223, 480, 527
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	6 cut(s)	5, 143, 147, 174, 225, 419
HapII	CCGG	4 cut(s)	110, 144, 182, 251
HhaI	GCGC	3 cut(s)	25, 299, 514
Hin1II	CATG	3 cut(s)	121, 139, 208
Hin6I	GCGC	3 cut(s)	23, 297, 512
HinP1I	GCGC	3 cut(s)	23, 297, 512
HinfI	GANTC	2 cut(s)	163, 317
HpaII	CCGG	4 cut(s)	110, 144, 182, 251
Hpy188I	TCNGA	2 cut(s)	95, 376
Hpy188III	TCNNGA	2 cut(s)	182, 472
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	3 cut(s)	49, 253, 387
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	33, 79, 389, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 395
HpyF3I	CTNAG	4 cut(s)	41, 255, 360, 536
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	121, 139, 208
HspAI	GCGC	3 cut(s)	23, 297, 512
Kpn2I	TCCGGA	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	11, 184, 194
LmnI	GCTCC	4 cut(s)	184, 205, 454, 509
Lsp1109I	GCAGC	2 cut(s)	491, 538
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	13, 186, 196
MboI	GATC	3 cut(s)	11, 184, 194
MboII	GAAGA	1 cut(s)	73
MflI	RGATCY	2 cut(s)	11, 194
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	1 cut(s)	270
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	39, 354
MnlI	CCTC	8 cut(s)	47, 50, 133, 159, 319, 369, 417, 490
Mox20I	TGGCCA	1 cut(s)	419
MroI	TCCGGA	1 cut(s)	181
MroNI	GCCGGC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	397
MscI	TGGCCA	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	4 cut(s)	110, 144, 182, 251
MspR9I	CCNGG	4 cut(s)	110, 176, 227, 233
MvaI	CCWGG	3 cut(s)	176, 227, 233
MwoI	GCNNNNNNNGC	2 cut(s)	260, 395
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	11, 184, 194
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	121, 139, 208
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	436
NsbI	TGCGCA	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	5 cut(s)	157, 160, 224, 481, 528
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	3 cut(s)	174, 225, 231
PspGI	CCWGG	3 cut(s)	174, 225, 231
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	146, 172, 229
PspPPI	RGGWCCY	1 cut(s)	229
PstI	CTGCAG	2 cut(s)	81, 445
PstNI	CAGNNNCTG	2 cut(s)	76, 232
PsuI	RGATCY	2 cut(s)	11, 194
RigI	GGCCGGCC	1 cut(s)	147
RsaI	GTAC	2 cut(s)	50, 74
RsaNI	GTAC	2 cut(s)	49, 73
SatI	GCNGC	5 cut(s)	156, 159, 223, 480, 527
Sau3AI	GATC	3 cut(s)	11, 184, 194
Sau96I	GGNCC	3 cut(s)	146, 172, 229
SbfI	CCTGCAGG	1 cut(s)	81
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	4 cut(s)	110, 176, 227, 233
SdaI	CCTGCAGG	1 cut(s)	81
SfcI	CTRYAG	3 cut(s)	77, 441, 542
SinI	GGWCC	1 cut(s)	229
Sse8387I	CCTGCAGG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	3 cut(s)	155, 158, 222
StyD4I	CCNGG	4 cut(s)	108, 174, 225, 231
StyI	CCWWGG	2 cut(s)	135, 489
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	320
TasI	AATT	1 cut(s)	270
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	3 cut(s)	158, 161, 225
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	479, 526
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	397
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.