Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013700

Physical Location & Seq

Genomic Coordinates Reverse (-)

16289064 .. 16290315

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1164400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAGCTGAAAAGTTGAATTTTTCACAGACATGCAACCTGCTGAGCCAATTCTTGAGGGAGAAGAGAACCCTGCAAGTCGTCCCTCCCACAACAATGAACTTGCTGACGACCATGGAGGCTGCTGATTCGAACCCAGCCCATCAGGCGGCTCAGACTCCATCATCAAAACCCAATATGGAATTGTTTCAGCACTTCACCAAAGGCCCAGAAGCGGTTTTGGGAGATCAGCAGCCTGGATCTGCTGCCCCGATGACTATTTTTTTCGGTGGGCAGGTGCTGGTTTTCAATGATCTGCAGGCTGAGAAGGCAAAAGAGATTATGGATTTGGCTACAATTGGAAGCTCCAAGAGTTCTGGTCGGTTTGTGGAGAAATTGGCTTCTGGGAATCAGTCGAATGTTGTCGCTAAAAATAATTACCAGGAAATTCAGAAGGTGCAACCCCAAGCAGCTGCGTCAGATTTGCCTATTGCTAGAAGAGCTTCGCTTCACAAGTTCTTGGCTAAGAGAAAAGAAAGGGTGGCAGCAATAGCACCATATCAACTGAACAACCAGAGAGCATCATCTCCTGCCAAAAGTGACGAGCAAACGAGTTCGAGGGCAGAAGACCAAAGTTCAAAGCAGCTTGAGCTCAGGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

214

Amino Acids

23.29

Weight (kDa)

9.38

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	81 - 111	1e-14	tify domain
Jas_motif	PF09425	156 - 181	5.4e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35140
malus_domestica	MD09G1178600.v1.1 MD17G1164400.v1.1
prunus_persica	Prupe.3G037800_v2.0.a1
pyrus_communis	pycom09g09690 pycom17g15750
rosa_chinensis	RchiOBHm_Chr2g0146371
rosa_laevigata	RLG00000020197
rosa_multiflora	Rmu_sc0002054.1_g000005 Rmu_sc0006330.1_g000001 Rmu_sc0023243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100130
rosa_rugosa	Rorug02G0394100
rosa_samantha	Rh2AG450800 Rh2BG463200 Rh2CG437600 Rh2DG472200
rosa_wichuraiana	Rw2G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	2 cut(s)	48, 265
AciI	CCGC	2 cut(s)	149, 215
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	19, 426
AfiI	CCNNNNNNNGG	2 cut(s)	148, 214
AgsI	TTSAA	3 cut(s)	19, 289, 618
AjnI	CCWGG	2 cut(s)	235, 420
AluBI	AGCT	6 cut(s)	8, 345, 452, 482, 625, 631
AluI	AGCT	6 cut(s)	8, 345, 452, 482, 625, 631
Alw21I	GWGCWC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	8 cut(s)	5, 122, 232, 245, 449, 452, 524, 622
ApoI	RAATTY	2 cut(s)	19, 426
Asp700I	GAANNNNTTC	2 cut(s)	186, 481
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	8 cut(s)	17, 109, 232, 244, 439, 461, 536, 634
BccI	CCATC	2 cut(s)	150, 169
BciT130I	CCWGG	2 cut(s)	237, 422
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	2 cut(s)	296, 638
BfuAI	ACCTGC	2 cut(s)	48, 265
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	9 cut(s)	6, 123, 150, 233, 246, 450, 453, 525, 623
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	9 cut(s)	7, 124, 151, 234, 247, 451, 454, 526, 624
Bme1390I	CCNGG	2 cut(s)	237, 422
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	237, 422
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 214
BseBI	CCWGG	2 cut(s)	237, 422
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	148, 214
BseMII	CTCAG	3 cut(s)	35, 167, 294
BseXI	GCAGC	8 cut(s)	17, 109, 232, 244, 439, 461, 536, 634
BseYI	CCCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	148, 214
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	226, 239, 292
Bsp1720I	GCTNAGC	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	149, 215
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	3 cut(s)	36, 166, 295
BspMAI	CTGCAG	1 cut(s)	300
BspMI	ACCTGC	2 cut(s)	48, 265
BspPI	GGATC	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	472
BspT104I	TTCGAA	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	3 cut(s)	226, 239, 292
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	237, 422
Bst6I	CTCTTC	2 cut(s)	59, 472
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	5 cut(s)	44, 153, 303, 504, 632
BstDSI	CCRYGG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	229, 242, 295
BstMBI	GATC	3 cut(s)	226, 239, 292
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 308, 479, 530, 628
BstNI	CCWGG	2 cut(s)	237, 422
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	235, 420
BstSFI	CTRYAG	2 cut(s)	296, 638
BstV1I	GCAGC	8 cut(s)	17, 109, 232, 244, 439, 461, 536, 634
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	114
BveI	ACCTGC	2 cut(s)	48, 265
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	444
CviAII	CATG	2 cut(s)	33, 115
DdeI	CTNAG	5 cut(s)	44, 153, 303, 504, 632
DpnI	GATC	3 cut(s)	228, 241, 294
DpnII	GATC	3 cut(s)	226, 239, 292
Eam1104I	CTCTTC	2 cut(s)	59, 472
EarI	CTCTTC	2 cut(s)	59, 472
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	633
Eco53kI	GAGCTC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	631
EcoRII	CCWGG	2 cut(s)	235, 420
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	36, 118
FaiI	YATR	6 cut(s)	34, 116, 179, 323, 538, 640
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	32, 114
Fnu4HI	GCNGC	9 cut(s)	6, 123, 150, 233, 246, 450, 453, 525, 623
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	9 cut(s)	6, 123, 150, 233, 246, 450, 453, 525, 623
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	9 cut(s)	6, 123, 150, 233, 246, 450, 453, 525, 623
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	207
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	36, 118
HinfI	GANTC	3 cut(s)	128, 157, 388
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	156, 432, 460
Hpy188III	TCNNGA	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	301, 427
HpyCH4V	TGCA	4 cut(s)	36, 76, 298, 439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 308, 479, 530, 628
HpyF3I	CTNAG	5 cut(s)	44, 153, 303, 504, 632
Hsp92II	CATG	2 cut(s)	36, 118
Kzo9I	GATC	3 cut(s)	226, 239, 292
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	8 cut(s)	17, 109, 232, 244, 439, 461, 536, 634
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	3 cut(s)	228, 241, 294
MboI	GATC	3 cut(s)	226, 239, 292
MboII	GAAGA	3 cut(s)	76, 489, 617
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	7 cut(s)	19, 50, 182, 336, 374, 415, 426
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	51, 96, 112, 591
MroXI	GAANNNNTTC	2 cut(s)	186, 481
MslI	CAYNNNNRTG	2 cut(s)	31, 95
MspA1I	CMGCKG	2 cut(s)	8, 452
MspR9I	CCNGG	2 cut(s)	237, 422
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	237, 422
MwoI	GCNNNNNNNGC	5 cut(s)	146, 308, 479, 530, 628
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	226, 239, 292
NlaIII	CATG	2 cut(s)	36, 118
NmuCI	GTSAC	1 cut(s)	578
NspI	RCATGY	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	472
PdmI	GAANNNNTTC	2 cut(s)	186, 481
PfeI	GAWTC	2 cut(s)	128, 388
PkrI	GCNGC	9 cut(s)	7, 124, 151, 234, 247, 451, 454, 526, 624
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	235, 420
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	235, 420
PspPI	GGNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	239
PvuII	CAGCTG	2 cut(s)	8, 452
RseI	CAYNNNNRTG	2 cut(s)	31, 95
SacI	GAGCTC	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	472
SatI	GCNGC	9 cut(s)	6, 123, 150, 233, 246, 450, 453, 525, 623
Sau3AI	GATC	3 cut(s)	226, 239, 292
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	237, 422
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	9 cut(s)	10, 42, 279, 347, 438, 454, 484, 627, 633
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	2 cut(s)	296, 638
SfuI	TTCGAA	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	31, 95
SmlI	CTYRAG	2 cut(s)	55, 626
SmoI	CTYRAG	2 cut(s)	55, 626
Sse9I	AATT	7 cut(s)	19, 50, 182, 336, 374, 415, 426
SsiI	CCGC	2 cut(s)	149, 215
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	235, 420
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	3 cut(s)	131, 395, 596
TasI	AATT	7 cut(s)	19, 50, 182, 336, 374, 415, 426
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	128, 388
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	8 cut(s)	5, 122, 232, 245, 449, 452, 524, 622
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	113
XapI	RAATTY	2 cut(s)	19, 426
XceI	RCATGY	1 cut(s)	36
XmnI	GAANNNNTTC	2 cut(s)	186, 481
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.