FvH4_6g37480

DNA damage response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011582
Physical Location & Seq
Forward (+)
29511452 .. 29515348
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37480.t5

Sequence Viewer

Length: 990 bp
ATGGATCTTAATGATCTTAACAAGGTTTGGGAAATCAAACCACTTAACAAAATTGGAGAAGAGGATGCGAGGAAGCTCCTTGAGAAAATAGCAAAGCAAGTGCAGCCTATAATGCGGAAGCGTAAATGGAAAGTCCGGGTTCTTTCTGAATTCAGTCCTGCCAACCCATCTCTTCAGGGGCTTAATATAGGAGGAGGTGCTGAAGTTAATCTCAGACTGCGGAGGCCAAACAATGAATGGGATTTTTATCCGTATGAACAGATTCTTGATACAATGTTGCATGAGCTCTGCCACAATGAGTATGGTCCTCATAACGCTGACTTTTACAACCTTTTGGATGAGATCAGAAGGGAATGTGAGGAACTGATGGGTAAAGGGATTACCGGCACTGGACAAGGATTTGATCTTCCTGGGAGACGTTTGGGTGGTTTCTCACGTCAACCTCCTCCATCATCTCTACGCCAAACTGCCTTGGCTGCTGCTGAAAAGAGAGCACATCATGGAGCTCTATTGCCATCAGGACCTAAGCGTTTAGGTGGGGATAGCAACATTAAGGCTGCTTTGAGCCCAATACAAGCTGCTGCTATGGCTGCAGAAAGGAGACTACACGATGATCTATGGTGTGGGTCAAAGTCTTTGGAGGGTGACACTAATGTCCAGGGTCATATCGGAACTTCTCAGAGGCCACATGCTTTCACTGTAACCAATGGCAGTTCTACCCAAAATCCTACTCAACCGAAGCCAGTTGCAGAAAAATTAGATGATCAATCAAAGTGGCAATGCAGTACATGCACTTTACTAAATGAGGAATTGGCAATGACCTGTGCAGCCTGCACGACTTCAAGAGATAACACCAAGTTTAAGGTTTGGTCTTGCAAATTTTGTACATTAGAGAACAGAGTTGGGGTAGAAAGATGCTTAGCTTGCAGAGAATGGCGATACTCATATGGTCCTCCTGTCTCCAATCGGGGACCTTATGTTGGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WLM zf-RanBP

Protein Analysis

330

Amino Acids

36.74

Weight (kDa)

8.71

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WLM PF08325 8 - 202 1.3e-58 WLM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
AccB1I GGYRCC 1 cut(s) 983
AciI CCGC 2 cut(s) 115, 220
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 149, 878
AcuI CTGAAG 2 cut(s) 158, 222
AfaI GTAC 2 cut(s) 787, 886
AfiI CCNNNNNNNGG 1 cut(s) 980
AgsI TTSAA 1 cut(s) 843
AjiI CACGTC 1 cut(s) 437
AjnI CCWGG 2 cut(s) 409, 657
AluBI AGCT 5 cut(s) 76, 286, 506, 578, 923
AluI AGCT 5 cut(s) 76, 286, 506, 578, 923
Alw21I GWGCWC 3 cut(s) 288, 496, 508
Alw26I GTCTC 3 cut(s) 409, 595, 964
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 224, 683
ApeKI GCWGC 8 cut(s) 103, 476, 479, 557, 578, 581, 590, 827
ApoI RAATTY 2 cut(s) 149, 878
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 4 cut(s) 305, 521, 950, 971
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 656
AvaII GGWCC 4 cut(s) 305, 521, 950, 971
BanI GGYRCC 1 cut(s) 983
BanII GRGCYC 3 cut(s) 288, 508, 569
Bbv12I GWGCWC 3 cut(s) 288, 496, 508
BbvI GCAGC 8 cut(s) 115, 463, 466, 544, 565, 568, 577, 839
BccI CCATC 4 cut(s) 175, 361, 457, 523
BciT130I CCWGG 2 cut(s) 411, 659
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 409, 595, 964
BfmI CTRYAG 1 cut(s) 591
BisI GCNGC 8 cut(s) 104, 477, 480, 558, 579, 582, 591, 828
BlpI GCTNAGC 1 cut(s) 919
BlsI GCNGC 8 cut(s) 105, 478, 481, 559, 580, 583, 592, 829
Bme1390I CCNGG 3 cut(s) 137, 411, 659
Bme18I GGWCC 4 cut(s) 305, 521, 950, 971
BmgBI CACGTC 1 cut(s) 437
BmgT120I GGNCC 4 cut(s) 305, 521, 950, 971
BmiI GGNNCC 2 cut(s) 972, 985
BmrFI CCNGG 3 cut(s) 137, 411, 659
BmsI GCATC 2 cut(s) 55, 905
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 410, 471, 658
Bsc4I CCNNNNNNNGG 1 cut(s) 980
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 2 cut(s) 394, 743
Bse3DI GCAATG 2 cut(s) 785, 822
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 2 cut(s) 411, 659
BseDI CCNNGG 3 cut(s) 410, 471, 658
BseGI GGATG 2 cut(s) 70, 343
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 980
BseMI GCAATG 2 cut(s) 785, 822
BseMII CTCAG 2 cut(s) 226, 692
BseNI ACTGG 2 cut(s) 394, 743
BseRI GAGGAG 2 cut(s) 207, 435
BseXI GCAGC 8 cut(s) 115, 463, 466, 544, 565, 568, 577, 839
BsgI GTGCAG 3 cut(s) 122, 817, 846
BshFI GGCC 2 cut(s) 226, 685
BshNI GGYRCC 1 cut(s) 983
BsiHKAI GWGCWC 3 cut(s) 288, 496, 508
BsiSI CCGG 2 cut(s) 136, 384
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 1 cut(s) 980
BsmAI GTCTC 3 cut(s) 409, 595, 964
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 984
BsnI GGCC 2 cut(s) 226, 685
Bsp1286I GDGCHC 4 cut(s) 288, 496, 508, 569
Bsp1407I TGTACA 1 cut(s) 884
Bsp143I GATC 6 cut(s) 4, 13, 342, 403, 613, 763
Bsp1720I GCTNAGC 1 cut(s) 919
BspACI CCGC 2 cut(s) 115, 220
BspANI GGCC 2 cut(s) 226, 685
BspCNI CTCAG 2 cut(s) 225, 691
BspLI GGNNCC 2 cut(s) 972, 985
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 983
BsrDI GCAATG 2 cut(s) 785, 822
BsrFI RCCGGY 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 884
BsrI ACTGG 2 cut(s) 394, 743
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 410, 471, 658
BssMI GATC 6 cut(s) 4, 13, 342, 403, 613, 763
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 2 cut(s) 411, 659
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 2 cut(s) 54, 177
BstAPI GCANNNNNTGC 1 cut(s) 789
BstAUI TGTACA 1 cut(s) 884
BstC8I GCNNGC 2 cut(s) 832, 925
BstDEI CTNAG 4 cut(s) 212, 525, 678, 919
BstF5I GGATG 2 cut(s) 70, 343
BstKTI GATC 6 cut(s) 7, 16, 345, 406, 616, 766
BstMAI GTCTC 3 cut(s) 409, 595, 964
BstMBI GATC 6 cut(s) 4, 13, 342, 403, 613, 763
BstMWI GCNNNNNNNGC 7 cut(s) 103, 112, 476, 587, 590, 789, 924
BstNI CCWGG 2 cut(s) 411, 659
BstNSI RCATGY 2 cut(s) 692, 792
BstSCI CCNGG 3 cut(s) 135, 409, 657
BstSFI CTRYAG 1 cut(s) 591
BstV1I GCAGC 8 cut(s) 115, 463, 466, 544, 565, 568, 577, 839
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 226, 685
BtrI CACGTC 1 cut(s) 437
BtsCI GGATG 2 cut(s) 70, 343
BtsIMutI CAGTG 2 cut(s) 387, 696
Cac8I GCNNGC 2 cut(s) 832, 925
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 4 cut(s) 305, 521, 950, 971
Csp6I GTAC 2 cut(s) 786, 885
CspCI CAANNNNNGTGG 2 cut(s) 755, 790
CviAII CATG 4 cut(s) 281, 500, 689, 789
CviQI GTAC 2 cut(s) 786, 885
DdeI CTNAG 4 cut(s) 212, 525, 678, 919
DpnI GATC 6 cut(s) 6, 15, 344, 405, 615, 765
DpnII GATC 6 cut(s) 4, 13, 342, 403, 613, 763
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 2 cut(s) 54, 177
EarI CTCTTC 2 cut(s) 54, 177
Ecl136II GAGCTC 2 cut(s) 286, 506
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 3 cut(s) 288, 508, 569
Eco47I GGWCC 4 cut(s) 305, 521, 950, 971
Eco53kI GAGCTC 2 cut(s) 286, 506
Eco57I CTGAAG 2 cut(s) 158, 222
EcoICRI GAGCTC 2 cut(s) 286, 506
EcoO109I RGGNCCY 2 cut(s) 521, 971
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 409, 657
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 3 cut(s) 288, 508, 569
ErhI CCWWGG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 4 cut(s) 284, 503, 692, 792
FaqI GGGAC 1 cut(s) 984
FatI CATG 4 cut(s) 280, 499, 688, 788
FauNDI CATATG 1 cut(s) 946
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 8 cut(s) 104, 477, 480, 558, 579, 582, 591, 828
FokI GGATG 2 cut(s) 77, 350
FriOI GRGCYC 3 cut(s) 288, 508, 569
Fsp4HI GCNGC 8 cut(s) 104, 477, 480, 558, 579, 582, 591, 828
GluI GCNGC 8 cut(s) 104, 477, 480, 558, 579, 582, 591, 828
HaeIII GGCC 2 cut(s) 226, 685
HapII CCGG 2 cut(s) 136, 384
Hin1II CATG 4 cut(s) 284, 503, 692, 792
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HinfI GANTC 1 cut(s) 262
HpaII CCGG 2 cut(s) 136, 384
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 5 cut(s) 148, 215, 347, 671, 681
Hpy188III TCNNGA 3 cut(s) 266, 519, 843
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4IV ACGT 2 cut(s) 418, 436
HpyF10VI GCNNNNNNNGC 7 cut(s) 103, 112, 476, 587, 590, 789, 924
HpyF3I CTNAG 4 cut(s) 212, 525, 678, 919
HpySE526I ACGT 2 cut(s) 418, 436
Hsp92II CATG 4 cut(s) 284, 503, 692, 792
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 6 cut(s) 4, 13, 342, 403, 613, 763
LmnI GCTCC 2 cut(s) 81, 503
Lsp1109I GCAGC 8 cut(s) 115, 463, 466, 544, 565, 568, 577, 839
LweI GCATC 2 cut(s) 55, 905
MaeII ACGT 2 cut(s) 418, 436
MaeIII GTNAC 2 cut(s) 644, 700
MalI GATC 6 cut(s) 6, 15, 344, 405, 615, 765
MboI GATC 6 cut(s) 4, 13, 342, 403, 613, 763
MboII GAAGA 3 cut(s) 71, 164, 398
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 4 cut(s) 288, 496, 508, 569
MluCI AATT 5 cut(s) 51, 149, 755, 809, 878
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 7 cut(s) 9, 18, 45, 183, 207, 552, 861
MspI CCGG 2 cut(s) 136, 384
MspR9I CCNGG 3 cut(s) 137, 411, 659
MvaI CCWGG 2 cut(s) 411, 659
MwoI GCNNNNNNNGC 7 cut(s) 103, 112, 476, 587, 590, 789, 924
NciI CCSGG 1 cut(s) 137
NdeI CATATG 1 cut(s) 946
NdeII GATC 6 cut(s) 4, 13, 342, 403, 613, 763
NlaIII CATG 4 cut(s) 284, 503, 692, 792
NlaIV GGNNCC 2 cut(s) 972, 985
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 2 cut(s) 692, 792
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 8 cut(s) 105, 478, 481, 559, 580, 583, 592, 829
PpuMI RGGWCCY 2 cut(s) 521, 971
Psp124BI GAGCTC 2 cut(s) 288, 508
Psp5II RGGWCCY 2 cut(s) 521, 971
Psp6I CCWGG 2 cut(s) 409, 657
PspGI CCWGG 2 cut(s) 409, 657
PspN4I GGNNCC 2 cut(s) 972, 985
PspPI GGNCC 4 cut(s) 305, 521, 950, 971
PspPPI RGGWCCY 2 cut(s) 521, 971
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 787, 886
RsaNI GTAC 2 cut(s) 786, 885
SacI GAGCTC 2 cut(s) 288, 508
SaqAI TTAA 7 cut(s) 9, 18, 45, 183, 207, 552, 861
SatI GCNGC 8 cut(s) 104, 477, 480, 558, 579, 582, 591, 828
Sau3AI GATC 6 cut(s) 4, 13, 342, 403, 613, 763
Sau96I GGNCC 4 cut(s) 305, 521, 950, 971
ScrFI CCNGG 3 cut(s) 137, 411, 659
SduI GDGCHC 4 cut(s) 288, 496, 508, 569
SfaNI GCATC 2 cut(s) 55, 905
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 4 cut(s) 305, 521, 950, 971
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 5 cut(s) 51, 149, 755, 809, 878
SsiI CCGC 2 cut(s) 115, 220
SstI GAGCTC 2 cut(s) 288, 508
StyD4I CCNGG 3 cut(s) 135, 409, 657
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 700
TaiI ACGT 2 cut(s) 421, 439
TasI AATT 5 cut(s) 51, 149, 755, 809, 878
TatI WGTACW 2 cut(s) 785, 884
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 7 cut(s) 9, 18, 45, 183, 207, 552, 861
Tru9I TTAA 7 cut(s) 9, 18, 45, 183, 207, 552, 861
TscAI CASTG 2 cut(s) 394, 703
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 8 cut(s) 103, 476, 479, 557, 578, 581, 590, 827
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 2 cut(s) 249, 270
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 2 cut(s) 394, 703
VpaK11BI GGWCC 4 cut(s) 305, 521, 950, 971
XapI RAATTY 2 cut(s) 149, 878
XceI RCATGY 2 cut(s) 692, 792
XcmI CCANNNNNNNNNTGG 2 cut(s) 234, 299
XmnI GAANNNNTTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.