Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011582

Physical Location & Seq

Genomic Coordinates Reverse (-)

12570314 .. 12573733

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1157700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCGCAAACGTCAATGGAAAGTCAAAGTGCTTTCGGAATTCTGTCCTGCCAATCCTGGTCTTCAGGGGCTCAATGTAGGAGGAGGTGTTGAAATTAAGCTCAGACTGCGGAGGCCGAACAGTGATTGGGTTTTCTACCCGTATGAACAGATCCTTGATACAATGCTGCATGAGCTCTGCCACAACGAACATGGTCCTCACAATGCTGACTTTTACAGACTTTTGGATGAGATCAGAAGGGAATGTGAGGAACTGATAGCTAAGGGGATTTCAGGCACGGGGCAAGGATTTGATCTTCCTGGAAGACGTTTGGGTGGTTTCTCCTGTCAAGCCCCTCTGTCATCTATTCGCCAGACTGCCTTGGCTGCTGCTGAAACCAGAGCACGCCGTGGAGCTTTGTTACCATCAGGGCCTAAGCGTTTAGGTGGCGATAGCAACATTAAGGCAGCTTTGAGCCCAGTACAAGCTGCTGCTATGGCTGCAGAAAGGAGACTGCATGATGATTTATGGTGTGGGTCCAAGTCTTCGGAGGGTGACATTGGGGTACATGGGAACATTGGAACTTCTCAAAGGCCACAACCGTTCGCATTTACTGATGGCGTCTCTACCCAGACTAATATTAAACTGAAGCCAGGTCAGGAAGAAATGGATGATCAAGCAAAGTGGAAATGCAGTATGTGCACTTTATTAAATAAGCCGTTGACATTGAGATGTACAGCCTGCGGGACGCTAAAAGAGGATCTGAAGTATAAGGTTTGGTCTTGCAAATTTTGTACCCTAGACAACAGAGTCGAGCTAGATAGATGCTTAGCTTGTGGAGAATGGAGATACTCGTCCGGCCCTCCTGTCCCTACCCATGGACCTTACGTCGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WLM zf-RanBP

Protein Analysis

293

Amino Acids

32.27

Weight (kDa)

8.76

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WLM	PF08325	1 - 165	3.6e-47	WLM domain
Zn_ribbon_RanBP	PF00641	221 - 247	2.5e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37480 FvH4_6g37480 FvH4_6g37480 FvH4_6g37480 FvH4_6g37480
malus_domestica	MD09G1157700.v1.1
prunus_persica	Prupe.3G168300_v2.0.a1 Prupe.3G168300_v2.0.a1
pyrus_communis	pycom09g07630
rosa_chinensis	RchiOBHm_Chr2g0150321
rosa_laevigata	RLG00000020487
rosa_multiflora	Rmu_sc0002179.1_g000002 Rmu_sc0042700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097290
rosa_rugosa	Rorug02G0420500
rosa_samantha	Rh2AG479500 Rh2BG491800 Rh2CG465800 Rh2DG500600
rosa_wichuraiana	Rw2G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	788
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	2 cut(s)	109, 723
AclWI	GGATC	2 cut(s)	145, 747
AcsI	RAATTY	2 cut(s)	38, 767
AcuI	CTGAAG	3 cut(s)	47, 647, 764
AcyI	GRCGYC	1 cut(s)	600
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	5 cut(s)	462, 546, 715, 775, 874
AfiI	CCNNNNNNNGG	2 cut(s)	857, 869
AgsI	TTSAA	1 cut(s)	92
AhdI	GACNNNNNGTC	1 cut(s)	866
AjnI	CCWGG	3 cut(s)	55, 298, 631
AluBI	AGCT	8 cut(s)	100, 175, 260, 395, 449, 467, 796, 812
AluI	AGCT	8 cut(s)	100, 175, 260, 395, 449, 467, 796, 812
Alw21I	GWGCWC	3 cut(s)	177, 385, 683
Alw26I	GTCTC	2 cut(s)	484, 607
Alw44I	GTGCAC	1 cut(s)	679
AlwI	GGATC	2 cut(s)	145, 747
AoxI	GGCC	4 cut(s)	113, 410, 572, 838
ApaLI	GTGCAC	1 cut(s)	679
ApeKI	GCWGC	7 cut(s)	166, 365, 368, 446, 467, 470, 479
ApoI	RAATTY	2 cut(s)	38, 767
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	5 cut(s)	194, 410, 516, 839, 860
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	3 cut(s)	194, 516, 860
BaeGI	GKGCMC	1 cut(s)	683
BanII	GRGCYC	3 cut(s)	72, 177, 458
BbsI	GAAGAC	3 cut(s)	53, 310, 516
Bbv12I	GWGCWC	3 cut(s)	177, 385, 683
BbvI	GCAGC	7 cut(s)	153, 352, 355, 454, 457, 458, 466
BccI	CCATC	2 cut(s)	412, 590
BceAI	ACGGC	2 cut(s)	372, 682
BciT130I	CCWGG	3 cut(s)	57, 300, 633
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	484, 607
BfaI	CTAG	2 cut(s)	779, 797
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	7 cut(s)	167, 366, 369, 447, 468, 471, 480
BlpI	GCTNAGC	1 cut(s)	808
BlsI	GCNGC	7 cut(s)	168, 367, 370, 448, 469, 472, 481
Bme1390I	CCNGG	3 cut(s)	57, 300, 633
Bme18I	GGWCC	3 cut(s)	194, 516, 860
BmeRI	GACNNNNNGTC	1 cut(s)	866
BmgT120I	GGNCC	5 cut(s)	194, 410, 516, 839, 860
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	3 cut(s)	57, 300, 633
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	452
BpiI	GAAGAC	3 cut(s)	53, 310, 516
Bpu10I	CCTNAGC	2 cut(s)	261, 414
Bpu1102I	GCTNAGC	1 cut(s)	808
BsaHI	GRCGYC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	360, 388, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	857, 869
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	3 cut(s)	57, 300, 633
BseDI	CCNNGG	3 cut(s)	360, 388, 856
BseGI	GGATG	2 cut(s)	232, 655
BseLI	CCNNNNNNNGG	2 cut(s)	857, 869
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	683
BseXI	GCAGC	7 cut(s)	153, 352, 355, 454, 457, 458, 466
BshFI	GGCC	4 cut(s)	115, 412, 574, 840
BsiHKAI	GWGCWC	3 cut(s)	177, 385, 683
BsiSI	CCGG	1 cut(s)	837
BslFI	GGGAC	2 cut(s)	739, 833
BslI	CCNNNNNNNGG	2 cut(s)	857, 869
BsmAI	GTCTC	2 cut(s)	484, 607
BsmBI	CGTCTC	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	739, 833
BsnI	GGCC	4 cut(s)	115, 412, 574, 840
Bsp1286I	GDGCHC	5 cut(s)	72, 177, 385, 458, 683
Bsp1407I	TGTACA	1 cut(s)	713
Bsp143I	GATC	5 cut(s)	150, 231, 292, 652, 739
Bsp1720I	GCTNAGC	1 cut(s)	808
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	2 cut(s)	109, 723
BspANI	GGCC	4 cut(s)	115, 412, 574, 840
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	517
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	2 cut(s)	145, 747
BsrGI	TGTACA	1 cut(s)	713
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	360, 388, 856
BssMI	GATC	5 cut(s)	150, 231, 292, 652, 739
BssNI	GRCGYC	1 cut(s)	600
BssT1I	CCWWGG	2 cut(s)	360, 856
Bst2UI	CCWGG	3 cut(s)	57, 300, 633
Bst4CI	ACNGT	2 cut(s)	122, 582
BstACI	GRCGYC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstAUI	TGTACA	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	385, 721
BstDEI	CTNAG	4 cut(s)	101, 261, 414, 808
BstDSI	CCRYGG	2 cut(s)	388, 856
BstF5I	GGATG	2 cut(s)	232, 655
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	153, 234, 295, 655, 742
BstMAI	GTCTC	2 cut(s)	484, 607
BstMBI	GATC	5 cut(s)	150, 231, 292, 652, 739
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 172, 365, 476, 479, 678
BstNI	CCWGG	3 cut(s)	57, 300, 633
BstSCI	CCNGG	3 cut(s)	55, 298, 631
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	683
BstV1I	GCAGC	7 cut(s)	153, 352, 355, 454, 457, 458, 466
BstV2I	GAAGAC	3 cut(s)	53, 310, 516
BstX2I	RGATCY	2 cut(s)	150, 739
BstYI	RGATCY	2 cut(s)	150, 739
BsuRI	GGCC	4 cut(s)	115, 412, 574, 840
BtgI	CCRYGG	2 cut(s)	388, 856
BtsCI	GGATG	2 cut(s)	232, 655
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	385, 721
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	5 cut(s)	194, 410, 516, 839, 860
CseI	GACGC	2 cut(s)	589, 736
Csp6I	GTAC	5 cut(s)	461, 545, 714, 774, 873
CspCI	CAANNNNNGTGG	2 cut(s)	644, 679
CviAII	CATG	6 cut(s)	170, 191, 497, 548, 857, 876
CviQI	GTAC	5 cut(s)	461, 545, 714, 774, 873
DdeI	CTNAG	4 cut(s)	101, 261, 414, 808
DpnI	GATC	5 cut(s)	152, 233, 294, 654, 741
DpnII	GATC	5 cut(s)	150, 231, 292, 652, 739
DraIII	CACNNNGTG	1 cut(s)	389
DrdI	GACNNNNNNGTC	1 cut(s)	788
DriI	GACNNNNNGTC	1 cut(s)	866
DseDI	GACNNNNNNGTC	1 cut(s)	788
Eam1105I	GACNNNNNGTC	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	360, 856
Eco24I	GRGCYC	3 cut(s)	72, 177, 458
Eco47I	GGWCC	3 cut(s)	194, 516, 860
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	3 cut(s)	47, 647, 764
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	55, 298, 631
EcoT14I	CCWWGG	2 cut(s)	360, 856
EcoT38I	GRGCYC	3 cut(s)	72, 177, 458
ErhI	CCWWGG	2 cut(s)	360, 856
Esp3I	CGTCTC	1 cut(s)	607
FaeI	CATG	6 cut(s)	173, 194, 500, 551, 860, 879
FaqI	GGGAC	2 cut(s)	739, 833
FatI	CATG	6 cut(s)	169, 190, 496, 547, 856, 875
FauI	CCCGC	1 cut(s)	716
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	7 cut(s)	167, 366, 369, 447, 468, 471, 480
FokI	GGATG	2 cut(s)	239, 662
FriOI	GRGCYC	3 cut(s)	72, 177, 458
Fsp4HI	GCNGC	7 cut(s)	167, 366, 369, 447, 468, 471, 480
FspBI	CTAG	2 cut(s)	779, 797
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	7 cut(s)	167, 366, 369, 447, 468, 471, 480
HaeIII	GGCC	4 cut(s)	115, 412, 574, 840
HapII	CCGG	1 cut(s)	837
HgaI	GACGC	2 cut(s)	589, 736
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	6 cut(s)	173, 194, 500, 551, 860, 879
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HinfI	GANTC	1 cut(s)	789
HpaII	CCGG	1 cut(s)	837
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	2 cut(s)	681, 702
Hpy188I	TCNGA	5 cut(s)	37, 104, 236, 529, 744
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	2 cut(s)	681, 702
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	2 cut(s)	122, 582
HpyCH4IV	ACGT	3 cut(s)	10, 307, 867
HpyCH4V	TGCA	6 cut(s)	169, 482, 496, 672, 681, 765
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 172, 365, 476, 479, 678
HpyF3I	CTNAG	4 cut(s)	101, 261, 414, 808
HpySE526I	ACGT	3 cut(s)	10, 307, 867
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	6 cut(s)	173, 194, 500, 551, 860, 879
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	5 cut(s)	150, 231, 292, 652, 739
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	7 cut(s)	153, 352, 355, 454, 457, 458, 466
LweI	GCATC	1 cut(s)	794
MaeI	CTAG	2 cut(s)	779, 797
MaeII	ACGT	3 cut(s)	10, 307, 867
MaeIII	GTNAC	2 cut(s)	399, 533
MalI	GATC	5 cut(s)	152, 233, 294, 654, 741
MboI	GATC	5 cut(s)	150, 231, 292, 652, 739
MboII	GAAGA	5 cut(s)	53, 287, 315, 516, 653
MflI	RGATCY	2 cut(s)	150, 739
MhlI	GDGCHC	5 cut(s)	72, 177, 385, 458, 683
MluCI	AATT	3 cut(s)	38, 93, 767
MlyI	GAGTC	1 cut(s)	798
MnlI	CCTC	9 cut(s)	74, 77, 105, 207, 241, 345, 523, 730, 852
MseI	TTAA	4 cut(s)	96, 441, 621, 689
MslI	CAYNNNNRTG	1 cut(s)	709
MspI	CCGG	1 cut(s)	837
MspR9I	CCNGG	3 cut(s)	57, 300, 633
MvaI	CCWGG	3 cut(s)	57, 300, 633
MwoI	GCNNNNNNNGC	6 cut(s)	106, 172, 365, 476, 479, 678
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	5 cut(s)	150, 231, 292, 652, 739
NlaIII	CATG	6 cut(s)	173, 194, 500, 551, 860, 879
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	533
NsbI	TGCGCA	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	7 cut(s)	168, 367, 370, 448, 469, 472, 481
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	55, 298, 631
PspGI	CCWGG	3 cut(s)	55, 298, 631
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	5 cut(s)	194, 410, 516, 839, 860
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	150, 739
RsaI	GTAC	5 cut(s)	462, 546, 715, 775, 874
RsaNI	GTAC	5 cut(s)	461, 545, 714, 774, 873
RseI	CAYNNNNRTG	1 cut(s)	709
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	96, 441, 621, 689
SatI	GCNGC	7 cut(s)	167, 366, 369, 447, 468, 471, 480
Sau3AI	GATC	5 cut(s)	150, 231, 292, 652, 739
Sau96I	GGNCC	5 cut(s)	194, 410, 516, 839, 860
SchI	GAGTC	1 cut(s)	798
ScrFI	CCNGG	3 cut(s)	57, 300, 633
SduI	GDGCHC	5 cut(s)	72, 177, 385, 458, 683
SfaNI	GCATC	1 cut(s)	794
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	3 cut(s)	194, 516, 860
SmiMI	CAYNNNNRTG	1 cut(s)	709
Sse9I	AATT	3 cut(s)	38, 93, 767
SsiI	CCGC	2 cut(s)	109, 723
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	2 cut(s)	779, 797
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	55, 298, 631
StyI	CCWWGG	2 cut(s)	360, 856
TaaI	ACNGT	2 cut(s)	122, 582
TaiI	ACGT	3 cut(s)	13, 310, 870
TaqI	TCGA	1 cut(s)	792
TasI	AATT	3 cut(s)	38, 93, 767
TatI	WGTACW	2 cut(s)	460, 713
Tru1I	TTAA	4 cut(s)	96, 441, 621, 689
Tru9I	TTAA	4 cut(s)	96, 441, 621, 689
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	7 cut(s)	166, 365, 368, 446, 467, 470, 479
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	679
VpaK11BI	GGWCC	3 cut(s)	194, 516, 860
XapI	RAATTY	2 cut(s)	38, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	2 cut(s)	779, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.